AlfalfaGEDB | MsaG002763

M. sativa ssp. caerulea / MsaG002763

KEGG: -
GO: -
PFAM: PF09133.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002763	XP_013468354.1	79.066	578	72	5	45	579	1	572	0.0	866

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002763	tr\|A0A072VLC9\|A0A072VLC9_MEDTR	79.066	578	72	5	45	579	1	572	0.0	866

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002763	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002763	MtrunA17_Chr1g0182621	79.066	578	72	5	45	579	1	572	0.0	866
MsaG002763	MtrunA17_Chr1g0182611	60.756	344	107	3	269	584	131	474	4.90e-124	377
MsaG002763	MtrunA17_Chr1g0182611	53.824	353	122	5	45	363	1	346	9.31e-108	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 161 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCCATTCCTACTTCGT+CGG	0.613142	1:-46891399	MsaT002763.1:CDS
AAATGTCTCCAAGCCATTGA+AGG	0.479110	1:+46886353	None:intergenic
AACCACTGTTTAGCCATCTC+CGG	0.530631	1:-46892073	MsaT002763.1:CDS
AAGACTTTGCATTCATCTCC+GGG	0.486072	1:+46891335	None:intergenic
AAGCAGCATCCTGAGTGTAG+AGG	0.654326	1:-46891218	MsaT002763.1:CDS
AAGGGAATCAAGTTGGAAAG+TGG	0.576058	1:+46887697	None:intergenic
AATCAAGTTGGAAAGTGGTG+AGG	0.652791	1:+46887702	None:intergenic
AATGTTGTTCATGGTAGTAG+CGG	0.638546	1:-46890512	MsaT002763.1:CDS
AATTGCAAGACTCCATTCCC+CGG	0.573734	1:-46891353	MsaT002763.1:CDS
ACATATCTTGTTCAACTTCA+AGG	0.348260	1:+46891000	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	46886349	46892611	46886349	ID=MsaG002763
Chr1	mRNA	46886349	46892611	46886349	ID=MsaT002763.1;Parent=MsaG002763
Chr1	exon	46886349	46886535	46886349	ID=MsaT002763.1.exon10;Parent=MsaT002763.1
Chr1	CDS	46886349	46886535	46886349	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46887613	46887752	46887613	ID=MsaT002763.1.exon9;Parent=MsaT002763.1
Chr1	CDS	46887613	46887752	46887613	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46889845	46889903	46889845	ID=MsaT002763.1.exon8;Parent=MsaT002763.1
Chr1	CDS	46889845	46889903	46889845	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46890075	46890639	46890075	ID=MsaT002763.1.exon7;Parent=MsaT002763.1
Chr1	CDS	46890075	46890639	46890075	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46890806	46891053	46890806	ID=MsaT002763.1.exon6;Parent=MsaT002763.1
Chr1	CDS	46890806	46891053	46890806	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46891099	46891428	46891099	ID=MsaT002763.1.exon5;Parent=MsaT002763.1
Chr1	CDS	46891099	46891428	46891099	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46891544	46891691	46891544	ID=MsaT002763.1.exon4;Parent=MsaT002763.1
Chr1	CDS	46891544	46891691	46891544	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46891881	46891965	46891881	ID=MsaT002763.1.exon3;Parent=MsaT002763.1
Chr1	CDS	46891881	46891965	46891881	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46892058	46892273	46892058	ID=MsaT002763.1.exon2;Parent=MsaT002763.1
Chr1	CDS	46892058	46892273	46892058	ID=cds.MsaT002763.1;Parent=MsaT002763.1
Chr1	exon	46892526	46892611	46892526	ID=MsaT002763.1.exon1;Parent=MsaT002763.1
Chr1	CDS	46892526	46892611	46892526	ID=cds.MsaT002763.1;Parent=MsaT002763.1

Gene Sequence

>MsaT002763.1

ATGTTCTCTTCTCTCATGTTCCAAAGTCGAAACCCATACGAATCCGCACCATCTGCCGGCAGCTGCGCCACCACCACACTCCATCGTGTGAGAGAGTCTCCTCTCATCTCACTTATCTCTCTTCAACCAAACATGGCTGACTTCACTCCTACTTCTTCTAATTGCACCCCTACAACTTCTTCTTCTTCTTCTTCTTCTTCATCTTGCTTCCAACGAACGGTTACATTATACTATTGGTGGCTCGTTAAATCATCCCAAGGAAACAACCACTGTTTAGCCATCTCCGGCATCTCTTCCACAAAGGAAGAAGCGGTTCGGGTGTTTAATTCCGCTCCTATTATCAAAAGATATGATGAGGTTTCCCTTGAGACTGTCGATGGTATATATATTTTCAAGAGTTTTTTATTTGGCTTTCCTGAAAACTGGGAAACCTCTGTTCTAGCTTGCTTTAGAGAAGAATCAAAAATCGGTACTGATTCGGGCAATGCTGTTTTGGATAATGTATCTGCATTTTATCAAGAAATTTTCTCTAACGGTGTGGAAAAGTCCATTCCTACTTCGTCGGTATTGCCTGAAGAGGCCCTAGAGAATTGCAAGACTCCATTCCCCGGAGATGAATGCAAAGTCTTAAAGATGAGTAGGGTTGATGTTGCTTGTGGTAGTGGTAAAAATAGACGTAGTACCAGGTTGCATAATATTAAAGTCTGTCAGCAGAAGAAGCCGAAGCAGCATCCTGAGTGTAGAGGTCCTTTCAAGCATCCAGATGGAGAGCCGAGCTCTACTTCAAAGGCCATGGAAAATCATGATTCGGACACTGTTGTTCCGGATGATGTACCAGCAAATCTTCCAGAAATATCATTTGATGAAAAGGCCACGAGAGATTGCAATAAGTCGTTCCTTGAAGTTGAACAAGATATGTCAATTAAGACGAGTAAGGTCAATGATGTTCATGGTAGTGGCCGGACTAGACGTAGTGGCCGGTTGCATAATGCTAAGGACTACCAGAAGAAGCAGCCTGCATCTGGAGATCCTCTCAAGAATCCAGAGAAAGAGCAGAGCTCTATCTTGAAGGTTGTGGAAGATCATGATTTGGATACTGCTGTTCCTGATAATAAGTCTTTTCCTACTTCTTTGGTATCACCGGATAAGATCACGGGAGATCGCAACAAGGCACTTCTTGAAGATGAACGGGACATGTCAATTAAGACGTGTAGGGTCAATGTTGTTCATGGTAGTAGCGGGAATAGACGTAGTGCCCGGATGCATAATGTTATACCCTACCAGAGGAAGCAACCTGCTACTGGAGATCCTGCAACACATCCAGATAAAGACCAGATCTCTGCCTTAGCAGCCTTGGAATTGAGTGATGGAGGACTGGAAAGTCTATCGACACCGGTTCAGTCAAAAAAGGGAAGAGTGAACACAATGTCTGGGCAGGTCACTAATAGATTTAGTTCCAGAAATTCCAAAACTTTTTCAGCAAAAACTGAAGGATGTTATAAGAAAAAAAGGGCGACAGTTGAAACAGAAGCGGTCACACCTAAGAGAAAAATGATTAAACATGCATCTTCTGTAAAATCTCCTCAAGGCAGGGATTTAAGTCACTCGAACAAGGGAAGTCAACAGAGATTATCCACAGTTTCTCCAGAGTCATTGAGTCTCAAAAAATTCAGATCTGGAAGGTGGCTTCTACCTCGCTTAGAGTTTTGGCGCAATCAAACACCTATTTATAATATGCAGCCGCCGCTGCTTCTCACCACCACTACCTCACCACTTTCCAACTTGATTCCCTTTGTTTTATGCCTTTCTCAGTCAAGACAACACGAAAATTCGTCCTCTTCCTCCTTCTTCTCAGTCGCGACTTCTATCTATCAAAGACACATGGAAAGTGGTACCACTAGTGTGAATCATTTTCCTCAAATTCCAATTCAAGTTGCTAGAATACAAGAAGTTGAGGCTGCTGATTTAGTACATAGCCAAGGACCTGAACATGCTAAGTTAGTGCAAAATCTAAAGAAGAAAAAAGATGCTAGACATCCTTCAATGGCTTGGAGACATTTCTGA

Protein sequence

>MsaT002763.1

MFSSLMFQSRNPYESAPSAGSCATTTLHRVRESPLISLISLQPNMADFTPTSSNCTPTTSSSSSSSSSCFQRTVTLYYWWLVKSSQGNNHCLAISGISSTKEEAVRVFNSAPIIKRYDEVSLETVDGIYIFKSFLFGFPENWETSVLACFREESKIGTDSGNAVLDNVSAFYQEIFSNGVEKSIPTSSVLPEEALENCKTPFPGDECKVLKMSRVDVACGSGKNRRSTRLHNIKVCQQKKPKQHPECRGPFKHPDGEPSSTSKAMENHDSDTVVPDDVPANLPEISFDEKATRDCNKSFLEVEQDMSIKTSKVNDVHGSGRTRRSGRLHNAKDYQKKQPASGDPLKNPEKEQSSILKVVEDHDLDTAVPDNKSFPTSLVSPDKITGDRNKALLEDERDMSIKTCRVNVVHGSSGNRRSARMHNVIPYQRKQPATGDPATHPDKDQISALAALELSDGGLESLSTPVQSKKGRVNTMSGQVTNRFSSRNSKTFSAKTEGCYKKKRATVETEAVTPKRKMIKHASSVKSPQGRDLSHSNKGSQQRLSTVSPESLSLKKFRSGRWLLPRLEFWRNQTPIYNMQPPLLLTTTTSPLSNLIPFVLCLSQSRQHENSSSSSFFSVATSIYQRHMESGTTSVNHFPQIPIQVARIQEVEAADLVHSQGPEHAKLVQNLKKKKDARHPSMAWRHF*