AlfalfaGEDB | MsaG002785

M. sativa ssp. caerulea / MsaG002785

KEGG: K09522
GO: GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0040008 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0080090 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00226.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002785	QSD99771.1	88.102	664	71	4	96	755	1	660	0.0	1103

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002785	sp\|Q7TQ20\|DNJC2_RAT	35.126	595	286	17	192	754	83	609	4.23e-87	290

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002785	tr\|A0A896W4N5\|A0A896W4N5_MELAB	88.102	664	71	4	96	755	1	660	0.0	1103

TFs/TRs:

Gene ID	Type	Classification
MsaG002785	TF	MYB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000138	MsaG002785	0.811652	1.079494e-50	1.919385e-48
MsaG000705	MsaG002785	0.844425	1.425750e-58	6.410501e-56
MsaG001045	MsaG002785	0.804626	3.332018e-49	5.007790e-47
MsaG001092	MsaG002785	0.818072	4.134505e-52	8.645699e-50
MsaG001270	MsaG002785	0.805374	2.328510e-49	3.560932e-47
MsaG001897	MsaG002785	0.817838	4.667117e-52	9.700768e-50
MsaG002298	MsaG002785	0.839129	3.512929e-57	1.334433e-54
MsaG002636	MsaG002785	0.807769	7.309853e-50	1.182998e-47
MsaG002804	MsaG002785	0.928084	1.281174e-91	4.488574e-87
MsaG002785	MsaG004010	0.830565	4.921905e-55	1.447547e-52
MsaG002785	MsaG004091	0.831216	3.412720e-55	1.022661e-52
MsaG002785	MsaG004455	0.840074	1.999955e-57	7.825380e-55
MsaG002785	MsaG005038	0.806488	1.361377e-49	2.137261e-47
MsaG002785	MsaG005226	0.818039	4.205950e-52	8.787612e-50
MsaG002785	MsaG005530	0.800632	2.200875e-48	3.018620e-46
MsaG002785	MsaG006284	0.819128	2.388221e-52	5.133398e-50
MsaG002785	MsaG006355	0.812938	5.672611e-51	1.041262e-48
MsaG002785	MsaG006426	0.808475	5.179878e-50	8.526540e-48
MsaG002785	MsaG008125	0.842287	5.271812e-58	2.212503e-55
MsaG002785	MsaG008424	0.829032	1.157723e-54	3.259000e-52
MsaG002785	MsaG008848	0.840158	1.901785e-57	7.460949e-55
MsaG002785	MsaG008994	0.803396	5.987594e-49	8.746290e-47
MsaG002785	MsaG009423	0.814036	3.262331e-51	6.155194e-49
MsaG002785	MsaG009874	0.808437	5.277261e-50	8.678720e-48
MsaG002785	MsaG010113	0.822441	4.168360e-53	9.781604e-51
MsaG002785	MsaG010363	0.833636	8.637990e-56	2.778289e-53
MsaG002785	MsaG010604	0.837140	1.135498e-56	4.056387e-54
MsaG002785	MsaG010792	0.808494	5.132442e-50	8.452169e-48
MsaG002785	MsaG011147	0.818610	3.126309e-52	6.629331e-50
MsaG002785	MsaG011315	0.818926	2.653066e-52	5.672415e-50
MsaG002785	MsaG012162	0.811890	9.587569e-51	1.714771e-48
MsaG002785	MsaG012334	0.827510	2.683851e-54	7.239038e-52
MsaG002785	MsaG012396	0.842091	5.938000e-58	2.476513e-55
MsaG002785	MsaG013968	0.838532	5.003130e-57	1.865525e-54
MsaG002785	MsaG013971	0.818978	2.582314e-52	5.528708e-50
MsaG002785	MsaG014094	0.811815	9.951880e-51	1.776644e-48
MsaG002785	MsaG014471	0.804578	3.409058e-49	5.117932e-47
MsaG002785	MsaG014486	0.809274	3.501476e-50	5.875376e-48
MsaG002785	MsaG015237	0.822672	3.684540e-53	8.700560e-51
MsaG002785	MsaG015319	0.825140	9.783240e-54	2.470409e-51
MsaG002785	MsaG015322	0.816721	8.299541e-52	1.676157e-49
MsaG002785	MsaG015854	0.809117	3.781338e-50	6.321413e-48
MsaG002785	MsaG015918	0.805247	2.474117e-49	3.772512e-47
MsaG002785	MsaG016056	0.831236	3.373960e-55	1.011658e-52
MsaG002785	MsaG016159	0.839366	3.050417e-57	1.167302e-54
MsaG002785	MsaG016179	0.830211	5.999840e-55	1.746920e-52
MsaG002785	MsaG016384	0.831924	2.288612e-55	7.002007e-53
MsaG002785	MsaG016448	0.818355	3.570709e-52	7.521313e-50
MsaG002785	MsaG017061	0.830185	6.086306e-55	1.770789e-52
MsaG002785	MsaG017041	0.800904	1.937988e-48	2.674248e-46
MsaG002785	MsaG017148	0.804238	4.009378e-49	5.972157e-47
MsaG002785	MsaG017561	0.801559	1.425503e-48	1.996445e-46
MsaG002785	MsaG017887	0.801642	1.371129e-48	1.923964e-46
MsaG002785	MsaG018680	0.821561	6.647842e-53	1.523799e-50
MsaG002785	MsaG020863	0.812389	7.468706e-51	1.352383e-48
MsaG002785	MsaG021090	0.816322	1.018907e-51	2.036822e-49
MsaG002785	MsaG021129	0.829017	1.167267e-54	3.284479e-52
MsaG002785	MsaG021888	0.843544	2.449807e-58	1.070494e-55
MsaG002785	MsaG022579	0.814174	3.042081e-51	5.759653e-49
MsaG002785	MsaG022880	0.818027	4.232533e-52	8.840471e-50
MsaG002785	MsaG023078	0.824006	1.804264e-53	4.417310e-51
MsaG002785	MsaG023997	0.829939	6.986610e-55	2.018488e-52
MsaG002785	MsaG024046	0.816668	8.531507e-52	1.720581e-49
MsaG002785	MsaG024098	0.810827	1.626538e-50	2.834257e-48
MsaG002785	MsaG024503	0.800171	2.730147e-48	3.705466e-46
MsaG002785	MsaG024877	0.803225	6.493504e-49	9.447956e-47
MsaG002785	MsaG025838	0.838330	5.637130e-57	2.088630e-54
MsaG002785	MsaG025985	0.824631	1.287980e-53	3.207381e-51
MsaG002785	MsaG026446	0.800739	2.094091e-48	2.879022e-46
MsaG002785	MsaG026826	0.811392	1.228229e-50	2.170075e-48
MsaG002785	MsaG027432	0.805701	1.989239e-49	3.065442e-47
MsaG002785	MsaG028181	0.802790	7.977799e-49	1.149153e-46
MsaG002785	MsaG028232	0.811738	1.033854e-50	1.842169e-48
MsaG002785	MsaG028585	0.827036	3.482604e-54	9.269364e-52
MsaG002785	MsaG028605	0.811490	1.170236e-50	2.072511e-48
MsaG002785	MsaG028632	0.826182	5.552832e-54	1.443289e-51
MsaG002785	MsaG029106	0.811595	1.110696e-50	1.972168e-48
MsaG002785	MsaG029621	0.820786	1.001283e-52	2.248411e-50
MsaG002785	MsaG030200	0.806139	1.610893e-49	2.508143e-47
MsaG002785	MsaG030238	0.805474	2.218630e-49	3.400791e-47
MsaG002785	MsaG030455	0.836306	1.847917e-56	6.437462e-54
MsaG002785	MsaG030494	0.806564	1.312192e-49	2.063747e-47
MsaG002785	MsaG030698	0.824846	1.147062e-53	2.873310e-51
MsaG002785	MsaG030818	0.802808	7.912403e-49	1.140189e-46
MsaG002785	MsaG031104	0.820846	9.699898e-53	2.181553e-50
MsaG002785	MsaG032564	0.823655	2.178431e-53	5.282943e-51
MsaG002785	MsaG033570	0.835904	2.335917e-56	8.039105e-54
MsaG002785	MsaG033589	0.810985	1.503857e-50	2.630615e-48
MsaG002785	MsaG033588	0.832504	1.646984e-55	5.124390e-53
MsaG002785	MsaG033964	0.815085	1.915836e-51	3.711372e-49
MsaG002785	MsaG034018	0.802800	7.942845e-49	1.144360e-46
MsaG002785	MsaG034370	0.812808	6.056028e-51	1.108029e-48
MsaG002785	MsaG035136	0.801039	1.819464e-48	2.518364e-46
MsaG002785	MsaG035144	0.811898	9.546228e-51	1.707705e-48
MsaG002785	MsaG036001	0.812694	6.411445e-51	1.169749e-48
MsaG002785	MsaG036482	0.809937	2.525519e-50	4.306313e-48
MsaG002785	MsaG037969	0.807446	8.552898e-50	1.373501e-47
MsaG002785	MsaG038522	0.805429	2.267599e-49	3.472166e-47
MsaG002785	MsaG039139	0.808260	5.754661e-50	9.423711e-48
MsaG002785	MsaG040311	0.826458	4.776587e-54	1.251172e-51
MsaG002785	MsaG041086	0.817904	4.509573e-52	9.389229e-50
MsaG002785	MsaG041293	0.836984	1.243786e-56	4.422067e-54
MsaG002785	MsaG041854	0.806923	1.102501e-49	1.748625e-47
MsaG002785	MsaG042016	0.822854	3.343313e-53	7.933915e-51
MsaG002785	MsaG042353	0.811712	1.047569e-50	1.865400e-48
MsaG002785	MsaG042354	0.825421	8.400303e-54	2.137663e-51
MsaG002785	MsaG042534	0.819625	1.842341e-52	4.011639e-50
MsaG002785	MsaG042720	0.824819	1.163750e-53	2.912979e-51
MsaG002785	MsaG043183	0.825538	7.885617e-54	2.013242e-51
MsaG002785	MsaG044325	0.839520	2.783448e-57	1.070311e-54
MsaG002785	MsaG044575	0.823192	2.791835e-53	6.685811e-51
MsaG002785	MsaG044569	0.832064	2.114578e-55	6.496001e-53
MsaG002785	MsaG044709	0.803387	6.011305e-49	8.779288e-47
MsaG002785	MsaG044865	0.803715	5.143728e-49	7.569486e-47
MsaG002785	MsaG044869	0.801662	1.358062e-48	1.906497e-46
MsaG002785	MsaG046278	0.839890	2.232428e-57	8.685068e-55
MsaG002785	MsaG046368	0.814061	3.220902e-51	6.080871e-49
MsaG002785	MsaG046687	0.812834	5.975691e-51	1.094054e-48
MsaG002785	MsaG046860	0.819997	1.516135e-52	3.334304e-50
MsaG002785	MsaG046866	0.806138	1.612062e-49	2.509874e-47
MsaG002785	MsaG002980	0.816311	1.024565e-51	2.047598e-49
MsaG002785	MsaG002355	0.807604	7.923558e-50	1.277208e-47
MsaG002785	MsaG000822	0.840913	1.209472e-57	4.858781e-55
MsaG002785	MsaG009146	0.842571	4.438320e-58	1.879854e-55
MsaG002785	MsaG008699	0.815297	1.719965e-51	3.349957e-49
MsaG002785	MsaG012002	0.824282	1.555143e-53	3.836000e-51
MsaG002785	MsaG015535	0.812611	6.683099e-51	1.216787e-48
MsaG002785	MsaG022641	0.838042	6.681344e-57	2.453590e-54
MsaG002785	MsaG018327	0.805910	1.798905e-49	2.785731e-47
MsaG002785	MsaG019332	0.810016	2.429501e-50	4.150471e-48
MsaG002785	MsaG027150	0.817237	6.366641e-52	1.303037e-49
MsaG002785	MsaG031514	0.821526	6.771967e-53	1.550805e-50
MsaG002785	MsaG031416	0.859402	8.311270e-63	6.316851e-60
MsaG002785	MsaG030964	0.817571	5.358231e-52	1.106078e-49
MsaG002785	MsaG036285	0.815473	1.572288e-51	3.075946e-49
MsaG002785	MsaG040323	0.802066	1.123107e-48	1.591207e-46
MsaG002785	MsaG036986	0.816944	7.402567e-52	1.503640e-49
MsaG002785	MsaG043110	0.806328	1.470814e-49	2.300357e-47
MsaG002785	MsaG043553	0.841736	7.361588e-58	3.035543e-55

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002785	MtrunA17_Chr3g0142871	93.030	660	39	5	96	755	1	653	0.0	1090
MsaG002785	MtrunA17_Chr7g0269901	91.515	660	49	5	96	755	1	653	0.0	1079
MsaG002785	MtrunA17_Chr3g0142891	82.642	265	37	2	493	755	1	258	1.76e-140	413
MsaG002785	MtrunA17_Chr8g0383991	28.774	212	100	3	543	754	140	300	4.09e-21	94.7
MsaG002785	MtrunA17_Chr2g0324921	83.333	48	6	1	1	48	78	123	7.01e-20	91.7
MsaG002785	MtrunA17_Chr4g0061421	29.536	237	115	8	198	397	9	230	2.65e-17	86.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002785	AT3G11450.1	63.102	664	215	11	99	755	7	647	0.0	721
MsaG002785	AT5G06110.1	58.457	674	244	10	97	752	5	660	0.0	696
MsaG002785	AT5G06110.2	58.457	674	244	10	97	752	5	660	0.0	696
MsaG002785	AT5G45420.2	31.795	195	87	3	559	753	158	306	4.73e-18	86.3
MsaG002785	AT5G45420.1	31.795	195	87	3	559	753	158	306	4.73e-18	86.3
MsaG002785	AT5G45420.3	31.795	195	87	3	559	753	158	306	4.73e-18	86.3
MsaG002785	AT1G74250.1	29.167	240	117	6	198	397	12	238	7.88e-16	82.0

Find 161 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATGATGAAGGAAAGTTTC+AGG	0.179476	1:+47519290	MsaT002785.1:CDS
TTTCTCCTCTTCAGCAATTC+TGG	0.180978	1:-47518342	None:intergenic
GCAAGATCATTATGCATTAT+TGG	0.194820	1:+47517650	MsaT002785.1:CDS
TTCAATCTTCTTTGCTTCTT+TGG	0.201722	1:-47517796	None:intergenic
TCCTTTCGTCTCAGTATTCT+AGG	0.218999	1:-47518245	None:intergenic
CTTTGGCTGTATCGGGCTTC+TGG	0.244533	1:-47518892	None:intergenic
CATCTCTGGTTAGCTTCCTT+TGG	0.256785	1:-47519208	None:intergenic
CCATCTCCTTGAAGTTCCTT+TGG	0.285255	1:-47518795	None:intergenic
GTCAAACTGTCTTCCGGTTA+AGG	0.298905	1:+47517425	MsaT002785.1:CDS
CACTGGATCACGGTCTTTCC+AGG	0.300060	1:-47519253	None:intergenic
GAGGGGTTTGTGTGAGAAAA+TGG	0.311683	1:+47518565	MsaT002785.1:CDS
CCAGCCACAATAACTGAAAA+TGG	0.315257	1:+47519007	MsaT002785.1:CDS
AGCTGAGAAGAAAAGGAAAA+AGG	0.327832	1:+47518277	MsaT002785.1:CDS
CAAGATCATTATGCATTATT+GGG	0.328641	1:+47517651	MsaT002785.1:CDS
CAACTTCTTTGCCATATACT+TGG	0.342195	1:-47518303	None:intergenic
GAGAAAAGTAATCAACAAAA+TGG	0.344685	1:+47518659	MsaT002785.1:CDS
TGGTATAGTAGTTGTTGTTA+TGG	0.346513	1:-47519035	None:intergenic
CTGAATCCCGAGATCATAAA+AGG	0.353541	1:+47518126	MsaT002785.1:CDS
ATCTCTGGTTAGCTTCCTTT+GGG	0.356444	1:-47519207	None:intergenic
AATGGCTCTTTCAAGGCTAA+TGG	0.363655	1:+47518677	MsaT002785.1:CDS
ACTGTCAACAAGAGAAGAAT+TGG	0.371141	1:+47518970	MsaT002785.1:CDS
TCATATTTCATCGCCTTAAC+CGG	0.377068	1:-47517438	None:intergenic
TACTCACAAGAGCTTCTAGA+TGG	0.381177	1:+47517384	MsaT002785.1:CDS
CCACCTGATTCTCATGCTTC+TGG	0.385294	1:+47513882	MsaT002785.1:CDS
GCCGCTGCACTTAAACTTCT+CGG	0.387066	1:+47517483	MsaT002785.1:CDS
TAGCAATGGTTTGGATCCTA+TGG	0.404517	1:+47514043	MsaT002785.1:CDS
TGTTTCGTCAAACTGTCTTC+CGG	0.405117	1:+47517419	MsaT002785.1:CDS
GGAATGGGAGGGATGGGAAG+AGG	0.407566	1:+47514020	MsaT002785.1:CDS
CGATGATAAGTCTTCAATAA+AGG	0.408030	1:+47518019	MsaT002785.1:CDS
CAGCTACTCGTTCCCATCTC+TGG	0.408539	1:-47519222	None:intergenic
CATTTGATATTGAACAATTG+AGG	0.409018	1:+47518546	MsaT002785.1:CDS
TTGATGCTGCTTGTTGTTGT+TGG	0.409566	1:-47519100	None:intergenic
AGGCAAAAGCTGAGAAGAAA+AGG	0.413153	1:+47518270	MsaT002785.1:CDS
ATCAAAAGCTTTGGCTGTAT+CGG	0.414387	1:-47518900	None:intergenic
CGAGTAGCTGCAGCTGTACC+TGG	0.414686	1:+47519235	MsaT002785.1:CDS
TTGTTGATAATGCTTATAAG+AGG	0.415278	1:+47518219	MsaT002785.1:CDS
CGAAATCCCTTTGGTGGAAT+GGG	0.415367	1:+47514005	MsaT002785.1:CDS
CTTCTGTTGCAAAGCAGCTT+CGG	0.417552	1:-47518396	None:intergenic
CTACCAGAAGCATGAGAATC+AGG	0.421908	1:-47513885	None:intergenic
TCAAAAGCTTTGGCTGTATC+GGG	0.427892	1:-47518899	None:intergenic
GATTCTCATGCTTCTGGTAG+TGG	0.429593	1:+47513888	MsaT002785.1:CDS
GAGGTTTCATCCGGACAAAC+AGG	0.430275	1:+47517740	MsaT002785.1:CDS
TTTGGTATTCCTTTAAAAGC+TGG	0.431430	1:+47518063	MsaT002785.1:CDS
ATTCTTCTCTTGTTGACAGT+GGG	0.436243	1:-47518967	None:intergenic
ACAGCAGCTGCCTGTTTGTC+CGG	0.436914	1:-47517750	None:intergenic
GAGATTGAGCTATTGAGAAA+AGG	0.438019	1:+47518758	MsaT002785.1:CDS
CCTGAAACTTTCCTTCATCA+TGG	0.442260	1:-47519290	None:intergenic
TTTGGAGATCGAAATCCCTT+TGG	0.444197	1:+47513996	MsaT002785.1:CDS
TCATCGCCTAGAGACGGAAT+TGG	0.444617	1:-47518002	None:intergenic
CTGCTTGTTGTTGTTGGTAC+CGG	0.445233	1:-47519094	None:intergenic
TCAACAAAATGGCTCTTTCA+AGG	0.450515	1:+47518670	MsaT002785.1:CDS
CCAAAGGAACTTCAAGGAGA+TGG	0.451792	1:+47518795	MsaT002785.1:CDS
AAGAAACGTATCAAAAGCTT+TGG	0.453531	1:-47518909	None:intergenic
GAAAGTGGTTCAAGATGATA+AGG	0.455254	1:+47517551	MsaT002785.1:CDS
AACTTCGTTGAGGTTTCATC+CGG	0.457362	1:+47517731	MsaT002785.1:CDS
CAAGATCAAACTCATCCGCC+TGG	0.458657	1:-47518097	None:intergenic
CAAGTATATGGCAAAGAAGT+TGG	0.459085	1:+47518304	MsaT002785.1:CDS
GGGAAGAGGTAGCAATGGTT+TGG	0.460412	1:+47514034	MsaT002785.1:CDS
ATTTGATATTGAACAATTGA+GGG	0.462130	1:+47518547	MsaT002785.1:CDS
CCAACACTGCATAAGCCTCT+TGG	0.462398	1:-47517842	None:intergenic
TCGAAATCCCTTTGGTGGAA+TGG	0.463114	1:+47514004	MsaT002785.1:CDS
GATGCAATTGATTGTGCTGC+AGG	0.463598	1:-47518944	None:intergenic
AGAGGCGTGGTCTGCAGTGC+AGG	0.469414	1:+47519153	MsaT002785.1:CDS
TGCTTTCATTATTTCTTCAA+CGG	0.470133	1:-47518852	None:intergenic
CTGGTTAGCTTCCTTTGGGA+AGG	0.471179	1:-47519203	None:intergenic
GTCGTCGTCATCGTCGGTGT+TGG	0.475726	1:-47519055	None:intergenic
CAAAGGAAGCTAACCAGAGA+TGG	0.482494	1:+47519209	MsaT002785.1:CDS
GGAGATCGAAATCCCTTTGG+TGG	0.484494	1:+47513999	MsaT002785.1:CDS
GTTGTTGTCGTCGTCATCGT+CGG	0.485972	1:-47519061	None:intergenic
TTTGCAACAGAAGAAGTTGA+AGG	0.486726	1:+47518406	MsaT002785.1:CDS
TATGGCAAAGAAGTTGGAGG+AGG	0.488551	1:+47518310	MsaT002785.1:CDS
TGGCCAGCCAGCCTCCATAA+TGG	0.494322	1:+47517332	MsaT002785.1:CDS
TTTGGCAGCTTCAGTTTGCT+CGG	0.495369	1:-47517778	None:intergenic
CCTTTCGTCTCAGTATTCTA+GGG	0.496238	1:-47518244	None:intergenic
CTTTGGTGGAATGGGAGGGA+TGG	0.502219	1:+47514013	MsaT002785.1:CDS
TTTGGTGGAATGGGAGGGAT+GGG	0.503447	1:+47514014	MsaT002785.1:CDS
CAGCCATTATGGAGGCTGGC+TGG	0.507682	1:-47517335	None:intergenic
GTTGTTGTTGGTACCGGTGT+TGG	0.507732	1:-47519088	None:intergenic
TCAATCTCTTCTTTAGTCCA+AGG	0.508908	1:-47518743	None:intergenic
TTGATACGTTTCTTGAGAAG+AGG	0.511337	1:+47518918	MsaT002785.1:CDS
TAGAGAAGAAGGAGAAACCT+TGG	0.511744	1:+47518726	MsaT002785.1:CDS
GCATGGAAAGAGTGACCAGC+GGG	0.514626	1:-47517462	None:intergenic
ATCCCTCCCATTCCACCAAA+GGG	0.515203	1:-47514011	None:intergenic
AGCAGGCTACATAGAGAAGA+AGG	0.516964	1:+47518715	MsaT002785.1:CDS
TGAACAGCCATTATGGAGGC+TGG	0.517405	1:-47517339	None:intergenic
CGCCCATTCCTCATAAAAGC+AGG	0.519392	1:-47517963	None:intergenic
CCAAGAGGCTTATGCAGTGT+TGG	0.523151	1:+47517842	MsaT002785.1:CDS
TGATGATAATAATAAGAAAG+TGG	0.527231	1:+47517536	MsaT002785.1:CDS
TTTCGTTTCAGTTCAATCAT+CGG	0.527612	1:+47513946	MsaT002785.1:CDS
TCTCATGCTTCTGGTAGTGG+TGG	0.527925	1:+47513891	MsaT002785.1:CDS
CTCATGCTTCTGGTAGTGGT+GGG	0.529120	1:+47513892	MsaT002785.1:CDS
AATTCTTCTCTTGTTGACAG+TGG	0.529994	1:-47518968	None:intergenic
GTTTCAGAATACATTGGCAC+TGG	0.531471	1:+47518824	MsaT002785.1:CDS
GGAAACAGTAGTTCTCTAGC+AGG	0.533858	1:+47518698	MsaT002785.1:CDS
CAAAGGAACTTCAAGGAGAT+GGG	0.534432	1:+47518796	MsaT002785.1:CDS
AAGATCAAACTCATCCGCCT+GGG	0.537985	1:-47518096	None:intergenic
AATCAACCAATTCCGTCTCT+AGG	0.542225	1:+47517996	MsaT002785.1:CDS
GCATGAGAATCAGGTGGTGG+TGG	0.544543	1:-47513876	None:intergenic
AGCGGCCAGAATTGCTGAAG+AGG	0.545593	1:+47518337	MsaT002785.1:CDS
CCGAGATCATAAAAGGTGGA+TGG	0.548047	1:+47518133	MsaT002785.1:CDS
AATACTGAGACGAAAGGAAG+AGG	0.549424	1:+47518250	MsaT002785.1:CDS
CATCCCTCCCATTCCACCAA+AGG	0.550801	1:-47514012	None:intergenic
TATGAGGAATGGGCGGTGGT+CGG	0.561239	1:+47517971	MsaT002785.1:CDS
ATCATAAAAGGTGGATGGAA+AGG	0.565265	1:+47518138	MsaT002785.1:CDS
AACACCTTGTAGAAGTCTTG+TGG	0.565942	1:-47517936	None:intergenic
TTCTTCTCTTGTTGACAGTG+GGG	0.568296	1:-47518966	None:intergenic
GAAGTTTAAGTGCAGCGGCA+TGG	0.569496	1:-47517479	None:intergenic
TGGCTGTATCGGGCTTCTGG+AGG	0.570452	1:-47518889	None:intergenic
CAACAAGAGAAGAATTGGAA+GGG	0.571941	1:+47518975	MsaT002785.1:CDS
AATCCCTTTGGTGGAATGGG+AGG	0.575318	1:+47514008	MsaT002785.1:CDS
GACTTATCATCGCCTAGAGA+CGG	0.577588	1:-47518008	None:intergenic
ATCGGGCTTCTGGAGGAGAA+CGG	0.578804	1:-47518882	None:intergenic
TGTTGATAATGCTTATAAGA+GGG	0.580470	1:+47518220	MsaT002785.1:CDS
ACAGAAGAAGTTGAAGGAGA+AGG	0.582746	1:+47518412	MsaT002785.1:CDS
GAGGTTGTTTCAGAATACAT+TGG	0.584103	1:+47518818	MsaT002785.1:CDS
GGAGAAACAACGAAAAGCAG+AGG	0.585652	1:+47518358	MsaT002785.1:CDS
ACTCACAAGAGCTTCTAGAT+GGG	0.587973	1:+47517385	MsaT002785.1:CDS
GAAGTTGGAGGAGGAAGAAG+CGG	0.588565	1:+47518319	MsaT002785.1:CDS
AACAACAAGCAGCATCAACT+CGG	0.590459	1:+47519105	MsaT002785.1:CDS
TGAGAAAATGGAAGACAAAG+AGG	0.593431	1:+47518577	MsaT002785.1:CDS
AAAGGAAGCTAACCAGAGAT+GGG	0.594916	1:+47519210	MsaT002785.1:CDS
AGTCATCCGACGAAAAGTAA+TGG	0.596429	1:-47513923	None:intergenic
ATCCCTTTGGTGGAATGGGA+GGG	0.596841	1:+47514009	MsaT002785.1:CDS
ACCGAGAAGTTTAAGTGCAG+CGG	0.597566	1:-47517484	None:intergenic
GTCTTGTGGATCACAGTCGG+TGG	0.601678	1:-47517922	None:intergenic
AACAAGAGAAGAATTGGAAG+GGG	0.601968	1:+47518976	MsaT002785.1:CDS
GGAATACAAAAGTTTGCCAA+AGG	0.602960	1:+47518779	MsaT002785.1:CDS
TCATCTTAGATATCTTGCTA+CGG	0.606800	1:+47517680	MsaT002785.1:CDS
GTATATGGCAAAGAAGTTGG+AGG	0.607456	1:+47518307	MsaT002785.1:CDS
TCAACAAGAGAAGAATTGGA+AGG	0.609160	1:+47518974	MsaT002785.1:CDS
TCAAGGAGTTTCAGAACAAG+AGG	0.609387	1:+47519135	MsaT002785.1:CDS
GAAGCATGAGAATCAGGTGG+TGG	0.609693	1:-47513879	None:intergenic
AGTTTGCCAAAGGAACTTCA+AGG	0.610856	1:+47518789	MsaT002785.1:CDS
TTTGATATTGAACAATTGAG+GGG	0.611084	1:+47518548	MsaT002785.1:CDS
CCCTAGAATACTGAGACGAA+AGG	0.614708	1:+47518244	MsaT002785.1:CDS
AGCAATGGTTTGGATCCTAT+GGG	0.614858	1:+47514044	MsaT002785.1:CDS
GGATCCTATGGGAATGCTAG+AGG	0.615560	1:+47514055	MsaT002785.1:CDS
GGGATGGGAAGAGGTAGCAA+TGG	0.618448	1:+47514029	MsaT002785.1:CDS
GCTATCATAAAACTTCGTTG+AGG	0.618880	1:+47517721	MsaT002785.1:CDS
GCTAGAGGAAGTGTGCATCA+AGG	0.619564	1:+47514070	MsaT002785.1:CDS
CTTGTGAGTAAGTAATAAGA+CGG	0.621140	1:-47517371	None:intergenic
TCTTGTGGATCACAGTCGGT+GGG	0.629359	1:-47517921	None:intergenic
GAAGTCTTGTGGATCACAGT+CGG	0.629904	1:-47517925	None:intergenic
ATCAACTCGGAAGACTCTCA+AGG	0.633952	1:+47519118	MsaT002785.1:CDS
AAGCTGGAGAGAGTTTCCCC+AGG	0.639559	1:+47518079	MsaT002785.1:CDS
GACAACAACAATTCCAACAC+CGG	0.641520	1:+47519075	MsaT002785.1:CDS
AGATCAAACTCATCCGCCTG+GGG	0.647413	1:-47518095	None:intergenic
TGTTTGAACAGCCATTATGG+AGG	0.649988	1:-47517343	None:intergenic
AGTATGTGTTGTGACAAGAC+AGG	0.650186	1:-47518485	None:intergenic
GGCATGGAAAGAGTGACCAG+CGG	0.659809	1:-47517463	None:intergenic
ACTTCCTCTAGCATTCCCAT+AGG	0.663048	1:-47514059	None:intergenic
TGATCCACAAGACTTCTACA+AGG	0.666734	1:+47517932	MsaT002785.1:CDS
TTGCTGCTGTAAGAATCAGA+TGG	0.670992	1:-47517588	None:intergenic
AATCCCGAGATCATAAAAGG+TGG	0.674327	1:+47518129	MsaT002785.1:CDS
GAGTTTCAGAACAAGAGGCG+TGG	0.676797	1:+47519140	MsaT002785.1:CDS
AAGCATTATCAACAAGAGTG+CGG	0.686922	1:-47518211	None:intergenic
AGGAACTTCAAGGAGATGGG+AGG	0.689319	1:+47518799	MsaT002785.1:CDS
CTGGAGAGAGTTTCCCCAGG+CGG	0.701021	1:+47518082	MsaT002785.1:CDS
GCGATGAAATATGACCCCGC+TGG	0.701983	1:+47517447	MsaT002785.1:CDS
CCAGAAGCATGAGAATCAGG+TGG	0.707871	1:-47513882	None:intergenic
CATGGAAAGAGTGACCAGCG+GGG	0.770423	1:-47517461	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	47513873	47519333	47513873	ID=MsaG002785
Chr1	mRNA	47513873	47519333	47513873	ID=MsaT002785.1;Parent=MsaG002785
Chr1	exon	47513873	47514100	47513873	ID=MsaT002785.1.exon1;Parent=MsaT002785.1
Chr1	CDS	47513873	47514100	47513873	ID=cds.MsaT002785.1;Parent=MsaT002785.1
Chr1	exon	47517294	47519333	47517294	ID=MsaT002785.1.exon2;Parent=MsaT002785.1
Chr1	CDS	47517294	47519333	47517294	ID=cds.MsaT002785.1;Parent=MsaT002785.1

Gene Sequence

>MsaT002785.1

ATGCCACCACCACCTGATTCTCATGCTTCTGGTAGTGGTGGGAGTATAAACCATTACTTTTCGTCGGATGACTTTTCGTTTCAGTTCAATCATCGGAATCCTGATGATATTTTTGCTGAATATTTTGGAGATCGAAATCCCTTTGGTGGAATGGGAGGGATGGGAAGAGGTAGCAATGGTTTGGATCCTATGGGAATGCTAGAGGAAGTGTGCATCAAGGTCCTCCTCGTTGGAGTGATTCAGTTCAAGAGTTTTTTGTATTTTGTTGGCCAGCCAGCCTCCATAATGGCTGTTCAAACAAAATACCGTCTTATTACTTACTCACAAGAGCTTCTAGATGGGCAGCCTATTTTTGTTTCGTCAAACTGTCTTCCGGTTAAGGCGATGAAATATGACCCCGCTGGTCACTCTTTCCATGCCGCTGCACTTAAACTTCTCGGTCTTAATAAGAAAGAAGATAACAAAGATGATGATGATAATAATAAGAAAGTGGTTCAAGATGATAAGGAACATGTTTATTTGCCATCTGATTCTTACAGCAGCAAGAGCAAGAAAAAATCTGGTGGCGACGGAGATAAGCAACAGCAAGATCATTATGCATTATTGGGTCTGAGTCATCTTAGATATCTTGCTACGGAAGATCAAATTCGTAAAAGCTATCATAAAACTTCGTTGAGGTTTCATCCGGACAAACAGGCAGCTGCTGTTCTTTCCGAGCAAACTGAAGCTGCCAAAGAAGCAAAGAAGATTGAAATTGACGTTCATTTTAAGGCAATCCAAGAGGCTTATGCAGTGTTGGTTGATCCCGTAAAAAGAAGAATTTATGATTCTACAGACGAGTTTGATGATGAGATTCCCACCGACTGTGATCCACAAGACTTCTACAAGGTGTTTGCTCCTGCTTTTATGAGGAATGGGCGGTGGTCGGTTAATCAACCAATTCCGTCTCTAGGCGATGATAAGTCTTCAATAAAGGAAGTTGATAGTTTCTACAATTTTTGGTATTCCTTTAAAAGCTGGAGAGAGTTTCCCCAGGCGGATGAGTTTGATCTTGAGCAAGCTGAATCCCGAGATCATAAAAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCACGTATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATACTGAGACGAAAGGAAGAGGCAAAAGCTGAGAAGAAAAGGAAAAAGGAGTCCAAGTATATGGCAAAGAAGTTGGAGGAGGAAGAAGCGGCCAGAATTGCTGAAGAGGAGAAACAACGAAAAGCAGAGGAAGATAAAAAAGCTGCCGAAGCTGCTTTGCAACAGAAGAAGTTGAAGGAGAAGGAGAAAAAGCTCTTGCGGAAGGAGCGAACACGTCTTCGAACTCTCTCAAGACCTGTCTTGTCACAACACATACTTGATATTGCTGAAGACGATGTAGAAGAGCTTTGCATGTCATTTGATATTGAACAATTGAGGGGTTTGTGTGAGAAAATGGAAGACAAAGAGGTATTAGAGCAAGCAGAAGCTCTAAACGATGCACTGAGTTGCAAGAAAAACGTGGTTGATGAGAAAAGTAATCAACAAAATGGCTCTTTCAAGGCTAATGGAAACAGTAGTTCTCTAGCAGGCTACATAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATTGAGCTATTGAGAAAAGGAATACAAAAGTTTGCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCCGTTGAAGAAATAATGAAAGCAACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGATACGTTTCTTGAGAAGAGGAAACCTGCAGCACAATCAATTGCATCCCCACTGTCAACAAGAGAAGAATTGGAAGGGGTATCAATACCAGCCACAATAACTGAAAATGGTGAAGCCATAACAACAACTACTATACCAACACCGACGATGACGACGACAACAACAATTCCAACACCGGTACCAACAACAACAAGCAGCATCAACTCGGAAGACTCTCAAGGAGTTTCAGAACAAGAGGCGTGGTCTGCAGTGCAGGAAAGAGCGTTAGTTCAAGCTTTAAAAACCTTCCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGAAAGACCGTGATCCAGTGCAAGAAAAAATTTGCCATGATGAAGGAAAGTTTCAGGAACAAGAAAACTGCTGTTTGA

Protein sequence

>MsaT002785.1

MPPPPDSHASGSGGSINHYFSSDDFSFQFNHRNPDDIFAEYFGDRNPFGGMGGMGRGSNGLDPMGMLEEVCIKVLLVGVIQFKSFLYFVGQPASIMAVQTKYRLITYSQELLDGQPIFVSSNCLPVKAMKYDPAGHSFHAAALKLLGLNKKEDNKDDDDNNKKVVQDDKEHVYLPSDSYSSKSKKKSGGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYHKTSLRFHPDKQAAAVLSEQTEAAKEAKKIEIDVHFKAIQEAYAVLVDPVKRRIYDSTDEFDDEIPTDCDPQDFYKVFAPAFMRNGRWSVNQPIPSLGDDKSSIKEVDSFYNFWYSFKSWREFPQADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEAKAEKKRKKESKYMAKKLEEEEAARIAEEEKQRKAEEDKKAAEAALQQKKLKEKEKKLLRKERTRLRTLSRPVLSQHILDIAEDDVEELCMSFDIEQLRGLCEKMEDKEVLEQAEALNDALSCKKNVVDEKSNQQNGSFKANGNSSSLAGYIEKKEKPWTKEEIELLRKGIQKFAKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATITENGEAITTTTIPTPTMTTTTTIPTPVPTTTSSINSEDSQGVSEQEAWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVIQCKKKFAMMKESFRNKKTAV*