AlfalfaGEDB | MsaG002801

M. sativa ssp. caerulea / MsaG002801

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009965 GO:0010016 GO:0010073 GO:0010358 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048507 GO:0048519 GO:0048523 GO:0048532 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002801	KEH41968.1	97.705	305	6	1	1	305	20	323	0.0	624

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002801	sp\|Q9FNI3\|Y5625_ARATH	52.727	220	77	4	50	261	39	239	1.54e-63	205

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002801	tr\|A0A072VKM7\|A0A072VKM7_MEDTR	97.705	305	6	1	1	305	20	323	0.0	624

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002801	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002801	MtrunA17_Chr1g0178071	97.705	305	6	1	1	305	20	323	0.0	623
MsaG002801	MtrunA17_Chr7g0266821	60.465	258	66	10	60	305	64	297	7.03e-87	262
MsaG002801	MtrunA17_Chr8g0345771	70.796	113	29	2	52	162	167	277	1.77e-48	169
MsaG002801	MtrunA17_Chr7g0276471	69.725	109	29	2	56	162	117	223	2.36e-45	159
MsaG002801	MtrunA17_Chr5g0422501	66.087	115	33	1	53	161	232	346	7.11e-45	157
MsaG002801	MtrunA17_Chr1g0198661	61.157	121	36	2	53	162	188	308	6.86e-41	146
MsaG002801	MtrunA17_Chr1g0213701	50.467	107	43	2	45	146	145	246	8.11e-29	112
MsaG002801	MtrunA17_Chr5g0432721	36.296	135	65	6	35	162	302	422	2.71e-15	76.3
MsaG002801	MtrunA17_Chr4g0012861	35.338	133	66	6	35	160	295	414	3.07e-15	76.3
MsaG002801	MtrunA17_Chr3g0107701	35.758	165	81	9	35	188	319	469	1.93e-14	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002801	AT5G06250.2	52.727	220	77	4	50	261	39	239	1.57e-64	205
MsaG002801	AT5G06250.5	51.786	224	81	4	50	265	39	243	1.59e-64	204
MsaG002801	AT5G06250.4	52.727	220	77	4	50	261	39	239	2.07e-64	204
MsaG002801	AT3G11580.1	52.968	219	73	7	52	260	24	222	3.04e-62	198
MsaG002801	AT3G11580.3	52.968	219	73	7	52	260	24	222	3.95e-61	199
MsaG002801	AT5G06250.1	51.802	222	65	5	50	263	39	226	9.05e-61	194
MsaG002801	AT5G06250.3	51.802	222	65	5	50	263	39	226	1.46e-60	194
MsaG002801	AT2G36080.1	49.780	227	63	3	51	276	32	208	6.74e-59	189
MsaG002801	AT2G36080.3	47.561	246	78	3	51	295	32	227	7.84e-59	188
MsaG002801	AT3G11580.4	76.471	119	19	2	52	161	24	142	3.36e-58	187

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Find 76 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAAACGACTCGATGC+TGG	0.489099	1:+47736545	MsaT002801.1:CDS
AACCAAAGGACGAAACCGGT+GGG	0.646214	1:+47738061	MsaT002801.1:CDS
AAGACTTGATGATGATGCGC+AGG	0.600336	1:-47736770	None:intergenic
AAGGGTACTTAGGTTGTTTG+GGG	0.543731	1:+47738111	MsaT002801.1:CDS
AAGTTCAACTTCTAGTTCAA+GGG	0.539417	1:+47738093	MsaT002801.1:CDS
AATAAAACCCGAAGACGAAA+AGG	0.463997	1:+47736289	MsaT002801.1:CDS
AATAATATGCCATTAACACA+AGG	0.689101	1:+47738199	MsaT002801.1:CDS
AATGAGGTTGTTAATGGTGT+AGG	0.496825	1:+47736710	MsaT002801.1:CDS
AATGGTGTAGGGTGGTCCAG+AGG	0.566906	1:+47736722	MsaT002801.1:CDS
AATTGAACCATGGAGGTTGG+TGG	0.658505	1:-47736190	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	47736152	47738380	47736152	ID=MsaG002801
Chr1	mRNA	47736152	47738380	47736152	ID=MsaT002801.1;Parent=MsaG002801
Chr1	exon	47736152	47736824	47736152	ID=MsaT002801.1.exon1;Parent=MsaT002801.1
Chr1	CDS	47736152	47736824	47736152	ID=cds.MsaT002801.1;Parent=MsaT002801.1
Chr1	exon	47738041	47738279	47738041	ID=MsaT002801.1.exon2;Parent=MsaT002801.1
Chr1	CDS	47738041	47738279	47738041	ID=cds.MsaT002801.1;Parent=MsaT002801.1
Chr1	exon	47738375	47738380	47738375	ID=MsaT002801.1.exon3;Parent=MsaT002801.1
Chr1	CDS	47738375	47738380	47738375	ID=cds.MsaT002801.1;Parent=MsaT002801.1

Gene Sequence

>MsaT002801.1

ATGTTATTAGTCGAACCAACTTCTTGGTCTCTCCATCACCACCAACCTCCATGGTTCAATTCTCAAATCCATGAAAACTCACCTCATTACAACCTCAAAAACATCGAAGATGAAGAATTAGACACAACCACCACCGTAATAAAACCCGAAGACGAAAAGGAATCAATGTTTGAGAAACCCTTAACACCTTCTGACGTAGGAAAACTCAACCGTCTTGTTATCCCAAAACAATACGCTGAAAAATACTTTCCACTCGGCGGAGCAGACTCCGCCGAGTGCAAAGGACTTTTACTAAGTTTTGAGGATGAGTCAGGGAAGTGTTGGCGTTTCCGTTACTCATATTGGAACAGTAGTCAAAGCTATGTTCTAACAAAAGGTTGGAGTCGTTATGTTAAAGACAAACGACTCGATGCTGGCGATGTCGTTCTGTTTGAACGACATCGTGTTGATAGTCAGAGACTTTTTATCAACTGGAGGAGGAGGAGTGGGGATGATCAGTCGGCGTATGTTAGCAGAGGGGTGGGACATCATGGTAAGGGTAGTGATGGGAATGGTAAGAATGAGGTTGTTAATGGTGTAGGGTGGTCCAGAGGGTTCTATTCTGCGCATGTTCCTTATCCTGCGCATCATCATCAAGTCTTGCCATACCAACATGATCAATGTCTTCATGCAGGTAGAGGGTCCCAAAGTCAGAACCAAAGGACGAAACCGGTGGGAAAGAGTTCAAGTTCAACTTCTAGTTCAAGGGTACTTAGGTTGTTTGGGGTCAACATGGAATGCCAACCTGAACATGATTCTTCAACACCTCAATGTTCTTATGATAGTAACAATAATAATATGCCATTAACACAAGGTACTCTAGATACCTATCAATATCATCAACCTTCTAATTCTAATTCTCACCCTCACGTGGTGTAA

Protein sequence

>MsaT002801.1

MLLVEPTSWSLHHHQPPWFNSQIHENSPHYNLKNIEDEELDTTTTVIKPEDEKESMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGADSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDSQRLFINWRRRSGDDQSAYVSRGVGHHGKGSDGNGKNEVVNGVGWSRGFYSAHVPYPAHHHQVLPYQHDQCLHAGRGSQSQNQRTKPVGKSSSSTSSSRVLRLFGVNMECQPEHDSSTPQCSYDSNNNNMPLTQGTLDTYQYHQPSNSNSHPHVV*