Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002850 | PNX99521.1 | 53.789 | 673 | 221 | 13 | 1 | 591 | 1 | 665 | 0.0 | 635 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002850 | sp|Q9SY66|FRS11_ARATH | 41.100 | 309 | 173 | 3 | 229 | 529 | 372 | 679 | 4.82e-73 | 250 |
MsaG002850 | sp|Q9SY66|FRS11_ARATH | 30.769 | 260 | 133 | 9 | 30 | 248 | 11 | 264 | 7.04e-22 | 103 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002850 | tr|A0A2K3N8Z5|A0A2K3N8Z5_TRIPR | 53.789 | 673 | 221 | 13 | 1 | 591 | 1 | 665 | 0.0 | 635 |
Gene ID | Type | Classification |
---|---|---|
MsaG002850 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002850 | MtrunA17_Chr1g0198761 | 66.578 | 377 | 108 | 2 | 233 | 591 | 380 | 756 | 6.85e-179 | 524 |
MsaG002850 | MtrunA17_Chr1g0198761 | 45.270 | 296 | 119 | 6 | 31 | 283 | 16 | 311 | 2.30e-63 | 222 |
MsaG002850 | MtrunA17_Chr5g0431001 | 60.000 | 325 | 88 | 5 | 1 | 283 | 1 | 325 | 1.24e-117 | 358 |
MsaG002850 | MtrunA17_Chr5g0431001 | 92.135 | 89 | 7 | 0 | 233 | 321 | 394 | 482 | 3.51e-49 | 178 |
MsaG002850 | MtrunA17_Chr2g0276841 | 44.014 | 284 | 146 | 4 | 240 | 513 | 405 | 685 | 8.17e-73 | 246 |
MsaG002850 | MtrunA17_Chr2g0276841 | 30.942 | 223 | 115 | 5 | 60 | 248 | 69 | 286 | 2.16e-24 | 108 |
MsaG002850 | MtrunA17_Chr2g0290391 | 43.581 | 296 | 148 | 5 | 233 | 515 | 387 | 676 | 2.17e-66 | 229 |
MsaG002850 | MtrunA17_Chr2g0290391 | 29.956 | 227 | 108 | 4 | 61 | 243 | 51 | 270 | 1.80e-20 | 95.9 |
MsaG002850 | MtrunA17_Chr2g0294841 | 33.962 | 371 | 199 | 8 | 238 | 568 | 381 | 745 | 2.36e-64 | 225 |
MsaG002850 | MtrunA17_Chr2g0294841 | 34.091 | 220 | 103 | 6 | 60 | 242 | 44 | 258 | 7.89e-23 | 103 |
MsaG002850 | MtrunA17_Chr5g0430921 | 71.765 | 85 | 13 | 1 | 512 | 585 | 1 | 85 | 5.14e-33 | 121 |
MsaG002850 | MtrunA17_Chr1g0202341 | 30.492 | 305 | 183 | 8 | 241 | 524 | 380 | 676 | 1.73e-29 | 123 |
MsaG002850 | MtrunA17_Chr3g0080351 | 30.568 | 229 | 148 | 5 | 242 | 459 | 396 | 624 | 3.96e-27 | 117 |
MsaG002850 | MtrunA17_Chr5g0448761 | 31.276 | 243 | 151 | 5 | 240 | 466 | 395 | 637 | 1.65e-26 | 114 |
MsaG002850 | MtrunA17_Chr2g0296781 | 32.000 | 250 | 147 | 8 | 239 | 469 | 319 | 564 | 6.83e-22 | 100 |
MsaG002850 | MtrunA17_Chr2g0329031 | 28.085 | 235 | 154 | 5 | 230 | 453 | 326 | 556 | 1.04e-21 | 99.8 |
MsaG002850 | MtrunA17_Chr1g0207551 | 29.310 | 232 | 151 | 6 | 240 | 459 | 360 | 590 | 1.67e-21 | 99.4 |
MsaG002850 | MtrunA17_Chr6g0477261 | 31.200 | 250 | 149 | 8 | 239 | 469 | 208 | 453 | 5.07e-21 | 97.4 |
MsaG002850 | MtrunA17_Chr5g0440451 | 25.418 | 299 | 199 | 7 | 244 | 527 | 380 | 669 | 2.84e-20 | 95.5 |
MsaG002850 | MtrunA17_Chr1g0196541 | 30.631 | 222 | 137 | 5 | 251 | 455 | 332 | 553 | 1.03e-19 | 93.6 |
MsaG002850 | MtrunA17_Chr2g0291581 | 26.875 | 320 | 186 | 8 | 235 | 517 | 379 | 687 | 8.98e-19 | 90.5 |
MsaG002850 | MtrunA17_Chr5g0448511 | 26.126 | 222 | 152 | 3 | 244 | 453 | 171 | 392 | 9.12e-19 | 90.1 |
MsaG002850 | MtrunA17_Chr2g0324011 | 29.614 | 233 | 148 | 6 | 237 | 457 | 339 | 567 | 5.42e-18 | 87.8 |
MsaG002850 | MtrunA17_Chr2g0308841 | 27.488 | 211 | 141 | 4 | 257 | 455 | 14 | 224 | 7.79e-18 | 84.0 |
MsaG002850 | MtrunA17_Chr1g0203721 | 22.831 | 219 | 159 | 2 | 251 | 459 | 406 | 624 | 1.59e-17 | 86.7 |
MsaG002850 | MtrunA17_Chr1g0203051 | 28.218 | 202 | 133 | 4 | 257 | 446 | 421 | 622 | 1.65e-17 | 86.3 |
MsaG002850 | MtrunA17_Chr5g0441581 | 27.027 | 222 | 144 | 5 | 251 | 455 | 360 | 580 | 2.37e-17 | 85.9 |
MsaG002850 | MtrunA17_Chr3g0118611 | 27.027 | 222 | 148 | 4 | 244 | 453 | 277 | 496 | 5.31e-17 | 84.7 |
MsaG002850 | MtrunA17_Chr3g0082121 | 27.830 | 212 | 138 | 4 | 259 | 459 | 384 | 591 | 1.82e-16 | 83.2 |
MsaG002850 | MtrunA17_Chr8g0363841 | 22.623 | 305 | 205 | 7 | 258 | 531 | 364 | 668 | 2.81e-16 | 82.4 |
MsaG002850 | MtrunA17_Chr2g0287061 | 23.636 | 275 | 182 | 6 | 242 | 503 | 475 | 734 | 3.54e-16 | 82.4 |
MsaG002850 | MtrunA17_Chr6g0458391 | 25.352 | 213 | 147 | 3 | 258 | 459 | 555 | 766 | 4.48e-16 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002850 | AT1G10240.2 | 41.100 | 309 | 173 | 3 | 229 | 529 | 372 | 679 | 4.90e-74 | 250 |
MsaG002850 | AT1G10240.2 | 30.769 | 260 | 133 | 9 | 30 | 248 | 11 | 264 | 7.16e-23 | 103 |
MsaG002850 | AT1G10240.1 | 41.100 | 309 | 173 | 3 | 229 | 529 | 372 | 679 | 4.90e-74 | 250 |
MsaG002850 | AT1G10240.1 | 30.769 | 260 | 133 | 9 | 30 | 248 | 11 | 264 | 7.16e-23 | 103 |
MsaG002850 | AT5G28530.5 | 36.071 | 280 | 177 | 2 | 233 | 510 | 328 | 607 | 1.01e-53 | 193 |
MsaG002850 | AT5G28530.5 | 31.984 | 247 | 129 | 6 | 31 | 259 | 27 | 252 | 1.59e-25 | 111 |
MsaG002850 | AT5G28530.3 | 36.071 | 280 | 177 | 2 | 233 | 510 | 391 | 670 | 3.65e-53 | 193 |
MsaG002850 | AT5G28530.3 | 29.771 | 262 | 131 | 5 | 31 | 248 | 27 | 279 | 1.09e-25 | 112 |
MsaG002850 | AT5G28530.2 | 36.071 | 280 | 177 | 2 | 233 | 510 | 391 | 670 | 3.65e-53 | 193 |
MsaG002850 | AT5G28530.2 | 29.771 | 262 | 131 | 5 | 31 | 248 | 27 | 279 | 1.09e-25 | 112 |
MsaG002850 | AT5G28530.4 | 35.211 | 284 | 178 | 2 | 233 | 510 | 328 | 611 | 4.04e-52 | 189 |
MsaG002850 | AT5G28530.4 | 31.984 | 247 | 129 | 6 | 31 | 259 | 27 | 252 | 1.85e-25 | 111 |
MsaG002850 | AT5G28530.1 | 35.211 | 284 | 178 | 2 | 233 | 510 | 391 | 674 | 1.03e-51 | 189 |
MsaG002850 | AT5G28530.1 | 29.771 | 262 | 131 | 5 | 31 | 248 | 27 | 279 | 1.04e-25 | 112 |
MsaG002850 | AT4G38180.1 | 31.739 | 230 | 145 | 4 | 240 | 457 | 404 | 633 | 1.01e-27 | 119 |
MsaG002850 | AT4G38170.1 | 31.140 | 228 | 145 | 5 | 244 | 459 | 173 | 400 | 1.66e-25 | 111 |
MsaG002850 | AT4G15090.1 | 26.814 | 317 | 207 | 10 | 240 | 544 | 380 | 683 | 3.32e-25 | 111 |
MsaG002850 | AT4G15090.5 | 26.814 | 317 | 207 | 10 | 240 | 544 | 380 | 683 | 3.32e-25 | 111 |
MsaG002850 | AT4G15090.3 | 26.814 | 317 | 207 | 10 | 240 | 544 | 380 | 683 | 3.32e-25 | 111 |
MsaG002850 | AT4G15090.2 | 26.814 | 317 | 207 | 10 | 240 | 544 | 380 | 683 | 3.32e-25 | 111 |
MsaG002850 | AT4G15090.4 | 26.814 | 317 | 207 | 10 | 240 | 544 | 380 | 683 | 3.32e-25 | 111 |
MsaG002850 | AT3G22170.2 | 29.130 | 230 | 150 | 5 | 240 | 457 | 389 | 617 | 1.28e-24 | 109 |
MsaG002850 | AT3G22170.1 | 29.130 | 230 | 150 | 5 | 240 | 457 | 389 | 617 | 1.28e-24 | 109 |
MsaG002850 | AT1G76320.3 | 27.511 | 229 | 156 | 5 | 235 | 453 | 311 | 539 | 1.35e-20 | 96.7 |
MsaG002850 | AT1G76320.2 | 27.511 | 229 | 156 | 5 | 235 | 453 | 311 | 539 | 1.59e-20 | 96.3 |
MsaG002850 | AT1G76320.1 | 27.511 | 229 | 156 | 5 | 235 | 453 | 311 | 539 | 1.61e-20 | 96.3 |
MsaG002850 | AT1G76320.4 | 27.511 | 229 | 156 | 5 | 235 | 453 | 311 | 539 | 1.61e-20 | 96.3 |
MsaG002850 | AT5G18960.2 | 25.524 | 286 | 189 | 7 | 243 | 514 | 504 | 779 | 5.73e-20 | 94.7 |
MsaG002850 | AT5G18960.1 | 25.524 | 286 | 189 | 7 | 243 | 514 | 504 | 779 | 5.73e-20 | 94.7 |
MsaG002850 | AT2G27110.2 | 26.950 | 282 | 183 | 10 | 241 | 507 | 352 | 625 | 1.41e-19 | 93.6 |
MsaG002850 | AT2G27110.1 | 26.950 | 282 | 183 | 10 | 241 | 507 | 352 | 625 | 1.41e-19 | 93.6 |
MsaG002850 | AT2G27110.3 | 26.950 | 282 | 183 | 10 | 241 | 507 | 207 | 480 | 1.58e-19 | 93.2 |
MsaG002850 | AT4G19990.1 | 26.636 | 214 | 143 | 4 | 257 | 457 | 289 | 501 | 1.78e-19 | 93.2 |
MsaG002850 | AT4G19990.5 | 26.636 | 214 | 143 | 4 | 257 | 457 | 346 | 558 | 1.89e-19 | 93.2 |
MsaG002850 | AT4G19990.3 | 26.636 | 214 | 143 | 4 | 257 | 457 | 346 | 558 | 2.01e-19 | 92.8 |
MsaG002850 | AT4G19990.4 | 26.636 | 214 | 143 | 4 | 257 | 457 | 346 | 558 | 2.01e-19 | 92.8 |
MsaG002850 | AT4G19990.7 | 26.636 | 214 | 143 | 4 | 257 | 457 | 360 | 572 | 2.10e-19 | 92.8 |
MsaG002850 | AT4G19990.6 | 26.636 | 214 | 143 | 4 | 257 | 457 | 346 | 558 | 2.50e-19 | 92.8 |
MsaG002850 | AT4G19990.2 | 26.636 | 214 | 143 | 4 | 257 | 457 | 346 | 558 | 2.50e-19 | 92.8 |
MsaG002850 | AT2G32250.5 | 25.676 | 296 | 202 | 6 | 239 | 523 | 323 | 611 | 1.44e-18 | 90.1 |
MsaG002850 | AT2G32250.6 | 25.676 | 296 | 202 | 6 | 239 | 523 | 323 | 611 | 1.72e-18 | 90.1 |
MsaG002850 | AT2G32250.1 | 25.676 | 296 | 202 | 6 | 239 | 523 | 323 | 611 | 1.72e-18 | 90.1 |
MsaG002850 | AT2G32250.3 | 25.676 | 296 | 202 | 6 | 239 | 523 | 323 | 611 | 1.72e-18 | 90.1 |
MsaG002850 | AT2G32250.2 | 25.676 | 296 | 202 | 6 | 239 | 523 | 323 | 611 | 1.84e-18 | 90.1 |
MsaG002850 | AT2G32250.4 | 25.676 | 296 | 202 | 6 | 239 | 523 | 323 | 611 | 1.84e-18 | 90.1 |
MsaG002850 | AT2G32250.8 | 25.676 | 296 | 202 | 6 | 239 | 523 | 282 | 570 | 2.12e-18 | 89.7 |
MsaG002850 | AT2G32250.7 | 25.676 | 296 | 202 | 6 | 239 | 523 | 282 | 570 | 2.13e-18 | 89.7 |
MsaG002850 | AT3G06250.2 | 25.000 | 228 | 156 | 4 | 242 | 457 | 479 | 703 | 2.32e-18 | 89.7 |
MsaG002850 | AT3G06250.1 | 25.000 | 228 | 156 | 4 | 242 | 457 | 479 | 703 | 2.32e-18 | 89.7 |
MsaG002850 | AT3G06250.3 | 25.000 | 228 | 156 | 4 | 242 | 457 | 479 | 703 | 2.32e-18 | 89.7 |
MsaG002850 | AT1G52520.1 | 28.571 | 252 | 140 | 7 | 235 | 456 | 395 | 636 | 1.21e-17 | 87.4 |
MsaG002850 | AT1G80010.1 | 27.232 | 224 | 144 | 7 | 251 | 456 | 437 | 659 | 5.27e-15 | 79.0 |
Find 94 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATTACATGACTAGATTT+TGG | 0.131548 | 1:-48272228 | None:intergenic |
TCTTTACCCATCGTAAATTT+TGG | 0.158198 | 1:+48271597 | MsaT002850.1:CDS |
CCAATTAAAACTTACTTATT+AGG | 0.177601 | 1:-48272625 | None:intergenic |
CAAAATTAGAAATCAAAATT+TGG | 0.179189 | 1:+48271832 | MsaT002850.1:intron |
TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 1:+48270675 | MsaT002850.1:CDS |
ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 1:-48272384 | None:intergenic |
CTCATGTTGAAGCAACTTAA+AGG | 0.248230 | 1:-48271950 | None:intergenic |
TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 1:+48270409 | MsaT002850.1:CDS |
AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 1:-48271714 | None:intergenic |
CAATATGAATTCACAATTGA+TGG | 0.266214 | 1:+48270966 | MsaT002850.1:CDS |
AATATCATCATAAAGATAAA+AGG | 0.310779 | 1:+48272357 | MsaT002850.1:CDS |
TCAAGAACATGTGATTGATT+TGG | 0.314506 | 1:+48272392 | MsaT002850.1:CDS |
CATCAATTGTGAATTCATAT+TGG | 0.326055 | 1:-48270965 | None:intergenic |
ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 1:+48270876 | MsaT002850.1:intron |
CATGACAACGACGAGGCTTC+TGG | 0.347138 | 1:-48272519 | None:intergenic |
GGCGCTTCAACCCCTCCTTT+TGG | 0.349566 | 1:-48272498 | None:intergenic |
TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 1:+48272278 | MsaT002850.1:CDS |
AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 1:-48272427 | None:intergenic |
ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 1:+48271551 | MsaT002850.1:CDS |
GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 1:+48270616 | MsaT002850.1:CDS |
AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 1:+48271550 | MsaT002850.1:CDS |
CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 1:+48270220 | MsaT002850.1:CDS |
TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 1:-48270250 | None:intergenic |
ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 1:+48270488 | MsaT002850.1:CDS |
TTTGCTGGAATGACAACAAC+AGG | 0.418779 | 1:+48271647 | MsaT002850.1:CDS |
AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 1:+48271545 | MsaT002850.1:CDS |
TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 1:+48271616 | MsaT002850.1:CDS |
TATACGACCACCATCAACTT+TGG | 0.437731 | 1:-48272040 | None:intergenic |
CTTTAAACATGAGTTTCATA+AGG | 0.439926 | 1:+48271481 | MsaT002850.1:CDS |
GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 1:-48271910 | None:intergenic |
TGATTAGTTCCACCACAATC+TGG | 0.446933 | 1:-48272544 | None:intergenic |
AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 1:+48272314 | MsaT002850.1:CDS |
CATGTAATAAACTGCAATGA+TGG | 0.453622 | 1:+48272240 | MsaT002850.1:CDS |
GGAAAATGTGTTGTAATATG+AGG | 0.458305 | 1:-48271889 | None:intergenic |
GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 1:+48270517 | MsaT002850.1:CDS |
ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 1:-48270738 | None:intergenic |
CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 1:+48271556 | MsaT002850.1:CDS |
GAAATCAAAATTTGGAGAAG+AGG | 0.473242 | 1:+48271840 | MsaT002850.1:intron |
TATAAGACTTACAGGGCAAC+CGG | 0.479404 | 1:-48270778 | None:intergenic |
ACAATTGGAATGTTACGATA+AGG | 0.495591 | 1:-48270723 | None:intergenic |
TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 1:+48272712 | MsaT002850.1:intron |
TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 1:-48271943 | None:intergenic |
CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 1:+48272532 | MsaT002850.1:CDS |
AATTGTGAATTCATATTGGA+AGG | 0.507660 | 1:-48270961 | None:intergenic |
CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 1:+48272483 | MsaT002850.1:intron |
CTTTCTCGTCTCCATCGAAA+AGG | 0.515070 | 1:-48272195 | None:intergenic |
ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 1:-48270322 | None:intergenic |
TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 1:+48270191 | MsaT002850.1:CDS |
ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 1:+48270543 | MsaT002850.1:CDS |
ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 1:+48270759 | MsaT002850.1:CDS |
CAACATCATACCAAAGTTGA+TGG | 0.538288 | 1:+48272030 | MsaT002850.1:CDS |
TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 1:+48271532 | MsaT002850.1:CDS |
TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 1:-48272010 | None:intergenic |
CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 1:+48270221 | MsaT002850.1:CDS |
TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 1:+48270624 | MsaT002850.1:CDS |
GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 1:+48272707 | MsaT002850.1:intron |
CAAGTCAATAACATTGATGA+GGG | 0.558520 | 1:+48270331 | MsaT002850.1:CDS |
AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 1:-48271621 | None:intergenic |
ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 1:+48272398 | MsaT002850.1:CDS |
ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 1:+48270594 | MsaT002850.1:CDS |
ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 1:-48270214 | None:intergenic |
GTGTCAGAAGAGAATCCATC+GGG | 0.572540 | 1:+48270475 | MsaT002850.1:CDS |
TCATCAATGTTATTGACTTG+AGG | 0.573525 | 1:-48270328 | None:intergenic |
CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 1:+48270687 | MsaT002850.1:CDS |
AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 1:-48270323 | None:intergenic |
AGTCACTAACATTGATGGGT+GGG | 0.589348 | 1:+48270225 | MsaT002850.1:CDS |
AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 1:-48270215 | None:intergenic |
AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 1:+48270508 | MsaT002850.1:CDS |
TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 1:-48270490 | None:intergenic |
GCAGCAATTGAAGCTGCCAA+TGG | 0.600590 | 1:+48271994 | MsaT002850.1:CDS |
TCAAGTCAATAACATTGATG+AGG | 0.603097 | 1:+48270330 | MsaT002850.1:CDS |
CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 1:+48270554 | MsaT002850.1:CDS |
CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 1:-48270684 | None:intergenic |
AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 1:+48272487 | MsaT002850.1:intron |
CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 1:-48270220 | None:intergenic |
CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 1:-48271604 | None:intergenic |
TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 1:-48271603 | None:intergenic |
GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 1:+48270511 | MsaT002850.1:CDS |
AAGTCACTAACATTGATGGG+TGG | 0.624878 | 1:+48270224 | MsaT002850.1:CDS |
TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 1:+48270489 | MsaT002850.1:CDS |
ACGAGAACAGGTTGCCACAA+GGG | 0.630576 | 1:+48272326 | MsaT002850.1:CDS |
TGTGTCAGAAGAGAATCCAT+CGG | 0.632507 | 1:+48270474 | MsaT002850.1:CDS |
AACGAGAACAGGTTGCCACA+AGG | 0.633734 | 1:+48272325 | MsaT002850.1:CDS |
TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 1:-48272613 | None:intergenic |
TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 1:+48272535 | MsaT002850.1:CDS |
AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 1:+48272486 | MsaT002850.1:intron |
TAGAGACTGAAATTTAGCAG+AGG | 0.662901 | 1:-48272265 | None:intergenic |
TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 1:+48272708 | MsaT002850.1:intron |
AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 1:+48270938 | MsaT002850.1:CDS |
CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1:+48272033 | MsaT002850.1:CDS |
AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 1:+48272488 | MsaT002850.1:intron |
AAGTCAATAACATTGATGAG+GGG | 0.714581 | 1:+48270332 | MsaT002850.1:CDS |
ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 1:-48271926 | None:intergenic |
TCTGGAACATGACAACGACG+AGG | 0.797744 | 1:-48272526 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 48270178 | 48272740 | 48270178 | ID=MsaG002850 |
Chr1 | mRNA | 48270178 | 48272740 | 48270178 | ID=MsaT002850.1;Parent=MsaG002850 |
Chr1 | exon | 48270178 | 48270788 | 48270178 | ID=MsaT002850.1.exon1;Parent=MsaT002850.1 |
Chr1 | CDS | 48270178 | 48270788 | 48270178 | ID=cds.MsaT002850.1;Parent=MsaT002850.1 |
Chr1 | exon | 48270890 | 48270990 | 48270890 | ID=MsaT002850.1.exon2;Parent=MsaT002850.1 |
Chr1 | CDS | 48270890 | 48270990 | 48270890 | ID=cds.MsaT002850.1;Parent=MsaT002850.1 |
Chr1 | exon | 48271465 | 48271745 | 48271465 | ID=MsaT002850.1.exon3;Parent=MsaT002850.1 |
Chr1 | CDS | 48271465 | 48271745 | 48271465 | ID=cds.MsaT002850.1;Parent=MsaT002850.1 |
Chr1 | exon | 48271841 | 48272458 | 48271841 | ID=MsaT002850.1.exon4;Parent=MsaT002850.1 |
Chr1 | CDS | 48271841 | 48272458 | 48271841 | ID=cds.MsaT002850.1;Parent=MsaT002850.1 |
Chr1 | exon | 48272490 | 48272632 | 48272490 | ID=MsaT002850.1.exon5;Parent=MsaT002850.1 |
Chr1 | CDS | 48272490 | 48272632 | 48272490 | ID=cds.MsaT002850.1;Parent=MsaT002850.1 |
Chr1 | exon | 48272719 | 48272740 | 48272719 | ID=MsaT002850.1.exon6;Parent=MsaT002850.1 |
Chr1 | CDS | 48272719 | 48272740 | 48272719 | ID=cds.MsaT002850.1;Parent=MsaT002850.1 |
Gene Sequence |
Protein sequence |