AlfalfaGEDB | MsaG002850

M. sativa ssp. caerulea / MsaG002850

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002850	PNX99521.1	53.789	673	221	13	1	591	1	665	0.0	635

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002850	sp\|Q9SY66\|FRS11_ARATH	41.100	309	173	3	229	529	372	679	4.82e-73	250
MsaG002850	sp\|Q9SY66\|FRS11_ARATH	30.769	260	133	9	30	248	11	264	7.04e-22	103

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002850	tr\|A0A2K3N8Z5\|A0A2K3N8Z5_TRIPR	53.789	673	221	13	1	591	1	665	0.0	635

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002850	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002850	MtrunA17_Chr1g0198761	66.578	377	108	2	233	591	380	756	6.85e-179	524
MsaG002850	MtrunA17_Chr1g0198761	45.270	296	119	6	31	283	16	311	2.30e-63	222
MsaG002850	MtrunA17_Chr5g0431001	60.000	325	88	5	1	283	1	325	1.24e-117	358
MsaG002850	MtrunA17_Chr5g0431001	92.135	89	7	0	233	321	394	482	3.51e-49	178
MsaG002850	MtrunA17_Chr2g0276841	44.014	284	146	4	240	513	405	685	8.17e-73	246
MsaG002850	MtrunA17_Chr2g0276841	30.942	223	115	5	60	248	69	286	2.16e-24	108
MsaG002850	MtrunA17_Chr2g0290391	43.581	296	148	5	233	515	387	676	2.17e-66	229
MsaG002850	MtrunA17_Chr2g0290391	29.956	227	108	4	61	243	51	270	1.80e-20	95.9
MsaG002850	MtrunA17_Chr2g0294841	33.962	371	199	8	238	568	381	745	2.36e-64	225
MsaG002850	MtrunA17_Chr2g0294841	34.091	220	103	6	60	242	44	258	7.89e-23	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002850	AT1G10240.2	41.100	309	173	3	229	529	372	679	4.90e-74	250
MsaG002850	AT1G10240.2	30.769	260	133	9	30	248	11	264	7.16e-23	103
MsaG002850	AT1G10240.1	41.100	309	173	3	229	529	372	679	4.90e-74	250
MsaG002850	AT1G10240.1	30.769	260	133	9	30	248	11	264	7.16e-23	103
MsaG002850	AT5G28530.5	36.071	280	177	2	233	510	328	607	1.01e-53	193
MsaG002850	AT5G28530.5	31.984	247	129	6	31	259	27	252	1.59e-25	111
MsaG002850	AT5G28530.3	36.071	280	177	2	233	510	391	670	3.65e-53	193
MsaG002850	AT5G28530.3	29.771	262	131	5	31	248	27	279	1.09e-25	112
MsaG002850	AT5G28530.2	36.071	280	177	2	233	510	391	670	3.65e-53	193
MsaG002850	AT5G28530.2	29.771	262	131	5	31	248	27	279	1.09e-25	112

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Find 94 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTGTCAAACTTGTTT+TGG	0.261322	1:-48271714	None:intergenic
AAAGACAAGTGAACGAGAAC+AGG	0.453486	1:+48272314	MsaT002850.1:CDS
AAAGGATCAAGACCAAAAGG+AGG	0.655085	1:+48272486	MsaT002850.1:intron
AAAGTAATGGTCTCACAGTT+TGG	0.427267	1:+48271545	MsaT002850.1:CDS
AAAGTCCTTCAAATAAGCTA+AGG	0.560983	1:-48271621	None:intergenic
AACGAGAACAGGTTGCCACA+AGG	0.633734	1:+48272325	MsaT002850.1:CDS
AACGTCACAGTCAGCATTGT+TGG	0.377007	1:-48272427	None:intergenic
AAGGATCAAGACCAAAAGGA+GGG	0.611165	1:+48272487	MsaT002850.1:intron
AAGTCAATAACATTGATGAG+GGG	0.714581	1:+48270332	MsaT002850.1:CDS
AAGTCACTAACATTGATGGG+TGG	0.624878	1:+48270224	MsaT002850.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	48270178	48272740	48270178	ID=MsaG002850
Chr1	mRNA	48270178	48272740	48270178	ID=MsaT002850.1;Parent=MsaG002850
Chr1	exon	48270178	48270788	48270178	ID=MsaT002850.1.exon1;Parent=MsaT002850.1
Chr1	CDS	48270178	48270788	48270178	ID=cds.MsaT002850.1;Parent=MsaT002850.1
Chr1	exon	48270890	48270990	48270890	ID=MsaT002850.1.exon2;Parent=MsaT002850.1
Chr1	CDS	48270890	48270990	48270890	ID=cds.MsaT002850.1;Parent=MsaT002850.1
Chr1	exon	48271465	48271745	48271465	ID=MsaT002850.1.exon3;Parent=MsaT002850.1
Chr1	CDS	48271465	48271745	48271465	ID=cds.MsaT002850.1;Parent=MsaT002850.1
Chr1	exon	48271841	48272458	48271841	ID=MsaT002850.1.exon4;Parent=MsaT002850.1
Chr1	CDS	48271841	48272458	48271841	ID=cds.MsaT002850.1;Parent=MsaT002850.1
Chr1	exon	48272490	48272632	48272490	ID=MsaT002850.1.exon5;Parent=MsaT002850.1
Chr1	CDS	48272490	48272632	48272490	ID=cds.MsaT002850.1;Parent=MsaT002850.1
Chr1	exon	48272719	48272740	48272719	ID=MsaT002850.1.exon6;Parent=MsaT002850.1
Chr1	CDS	48272719	48272740	48272719	ID=cds.MsaT002850.1;Parent=MsaT002850.1

Gene Sequence

>MsaT002850.1

ATGATATCTGAAGTAAGCAATGATGCTAGTGATTGGCCCTTGCCTCAAGTCACTAACATTGATGGGTGGGTTCCTTTTGAAGGGCAAATATTTGAAGATGATGAATATGTAAATTCTTTAACATTTCAAGAGCTACAACATGAACCCTTGCCTCAAGTCAATAACATTGATGAGGGGATTCCTTTTGAAGGAAAATATTTGAAAGTGATAATCTTTGCTTTTGAATTTTATTGTTTATTTGCAAAACAAAATGGATTTTCTATTAGGCGTGATCACATTTATAAATCTTGTAAATTTGTGTCAGAAGAGAATCCATCGGGTGTTTATAAGAGGGAATTTGTTTGTCATCGTGGTGGTATTGGTAAACCACGCAAAACTGTTGAAGTGGAAAATCAAAGGAAACGAAAATCTTCAAGATGTGATTGTAGTGCAAAGATGGTAGTTACTAAGAGAAGAATTGGCATTGAGGAAAAATGGGTGGTTAAACATTTCAACAATTCTCACAACCACGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCACCTTATCGTAACATTCCAATTGTTGATCAAGATCGCATACTATTATTGTCTAAAGCCGGTTGCCCTTGGTATTGGTAAAGAAAGTGATGCTTCAGATGTTCTCAGATTGTGCAAAAGTTTGAAAGATCGAGATGAGGCCTTCCAATATGAATTCACAATTGATGGAAGTTCGAGATATGATGACTTTAAACATGAGTTTCATAAGGTGTATCATTTAGAATGTGCAGATGATTTTGAACGAGAATGGAAAGTAATGGTCTCACAGTTTGGTTTGGGTGTGGATAAGCATATTGACTTGCTCTTTACCCATCGTAAATTTTGGGCCTTAGCTTATTTGAAGGACTTTTTTTTTGCTGGAATGACAACAACAGGACGCTCAGAATCGATAAATTCATATATAAAAAGATTCTTAGATGCCAAAACAAGTTTGACAGATTTTGTAAATCAAAAATCAAAATTTGGAGAAGAGGCACGAATGCGTCAAAAGTATCATAATCCTCATATTACAACACATTTTCCTATTGAAGAACATGCCTCGTCTATACTCACACCTTATGCCTTTAAGTTGCTTCAACATGAGATCGAATTATCTGCAAAGTATGCAGCAATTGAAGCTGCCAATGGCTCTTATGTTGTGCAACATCATACCAAAGTTGATGGTGGTCGTATAGTAAGTTTGATAAAAGAAGAAGAGTCAATTCATTGTTCTTGTAAAGAGTTTCAATTTTCAGGAATAATATGTAGACATGCAATTCGAGTGCTAATGTTGAAAAATTATTTTGTTCTTCCATCAAAATATCTTCCTTTTCGATGGAGACGAGAAAGTTCATTGATCCCAAAATCTAGTCATGTAATAAACTGCAATGATGGATCCTCTGCTAAATTTCAGTCTCTAATTCGATGTTTGGAAGTCGAATCATTAAAGACAAGTGAACGAGAACAGGTTGCCACAAGGGAGTTAGAAAATATCATCATAAAGATAAAAGGCATGCCTGAAACTCAAGAACATGTGATTGATTTGGAAGAGGATGTTTCCAACAATGCTGACTGTGACGTTGAAAATCCTGATCAAGACCAAAAGGAGGGGTTGAAGCGCCAGAAGCCTCGTCGTTGTCATGTTCCAGATTGTGGTGGAACTAATCACGACTCACGAAACTGTCCAAACAAAAAGAGAAAAATGGAAGTGTTGCCTTCTCAATCTCCTAATAAGATCATGAAGGGTTGGAAGTAG

Protein sequence

>MsaT002850.1

MISEVSNDASDWPLPQVTNIDGWVPFEGQIFEDDEYVNSLTFQELQHEPLPQVNNIDEGIPFEGKYLKVIIFAFEFYCLFAKQNGFSIRRDHIYKSCKFVSEENPSGVYKREFVCHRGGIGKPRKTVEVENQRKRKSSRCDCSAKMVVTKRRIGIEEKWVVKHFNNSHNHELLDDKEVQFLHLIVTFQLLIKIAYYYCLKPVALGIGKESDASDVLRLCKSLKDRDEAFQYEFTIDGSSRYDDFKHEFHKVYHLECADDFEREWKVMVSQFGLGVDKHIDLLFTHRKFWALAYLKDFFFAGMTTTGRSESINSYIKRFLDAKTSLTDFVNQKSKFGEEARMRQKYHNPHITTHFPIEEHASSILTPYAFKLLQHEIELSAKYAAIEAANGSYVVQHHTKVDGGRIVSLIKEEESIHCSCKEFQFSGIICRHAIRVLMLKNYFVLPSKYLPFRWRRESSLIPKSSHVINCNDGSSAKFQSLIRCLEVESLKTSEREQVATRELENIIIKIKGMPETQEHVIDLEEDVSNNADCDVENPDQDQKEGLKRQKPRRCHVPDCGGTNHDSRNCPNKKRKMEVLPSQSPNKIMKGWK*