Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002857 | PNX99521.1 | 62.259 | 673 | 202 | 11 | 1 | 629 | 1 | 665 | 0.0 | 783 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002857 | sp|Q9SY66|FRS11_ARATH | 40.909 | 308 | 168 | 3 | 263 | 556 | 372 | 679 | 2.04e-71 | 246 |
MsaG002857 | sp|Q9SY66|FRS11_ARATH | 40.769 | 260 | 141 | 6 | 30 | 282 | 11 | 264 | 4.32e-49 | 185 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002857 | tr|A0A2K3N8Z5|A0A2K3N8Z5_TRIPR | 62.259 | 673 | 202 | 11 | 1 | 629 | 1 | 665 | 0.0 | 783 |
Gene ID | Type | Classification |
---|---|---|
MsaG002857 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002857 | MtrunA17_Chr1g0198761 | 70.557 | 377 | 97 | 1 | 267 | 629 | 380 | 756 | 0.0 | 558 |
MsaG002857 | MtrunA17_Chr1g0198761 | 60.135 | 296 | 109 | 4 | 31 | 317 | 16 | 311 | 7.55e-110 | 347 |
MsaG002857 | MtrunA17_Chr5g0431001 | 86.594 | 276 | 37 | 0 | 1 | 276 | 1 | 276 | 3.25e-172 | 499 |
MsaG002857 | MtrunA17_Chr5g0431001 | 92.135 | 89 | 7 | 0 | 267 | 355 | 394 | 482 | 3.36e-49 | 179 |
MsaG002857 | MtrunA17_Chr2g0276841 | 43.816 | 283 | 141 | 4 | 274 | 540 | 405 | 685 | 4.65e-71 | 243 |
MsaG002857 | MtrunA17_Chr2g0276841 | 41.704 | 223 | 125 | 2 | 60 | 282 | 69 | 286 | 2.71e-51 | 188 |
MsaG002857 | MtrunA17_Chr2g0294841 | 35.000 | 380 | 205 | 7 | 263 | 606 | 372 | 745 | 1.18e-67 | 235 |
MsaG002857 | MtrunA17_Chr2g0294841 | 43.182 | 220 | 117 | 3 | 60 | 276 | 44 | 258 | 2.08e-45 | 172 |
MsaG002857 | MtrunA17_Chr2g0290391 | 42.333 | 300 | 139 | 6 | 267 | 542 | 387 | 676 | 1.09e-61 | 217 |
MsaG002857 | MtrunA17_Chr2g0290391 | 42.731 | 227 | 113 | 2 | 61 | 277 | 51 | 270 | 4.97e-51 | 187 |
MsaG002857 | MtrunA17_Chr5g0430921 | 96.471 | 85 | 3 | 0 | 539 | 623 | 1 | 85 | 2.12e-51 | 172 |
MsaG002857 | MtrunA17_Chr1g0202341 | 30.164 | 305 | 177 | 7 | 275 | 551 | 380 | 676 | 1.15e-29 | 124 |
MsaG002857 | MtrunA17_Chr3g0081281 | 76.923 | 65 | 15 | 0 | 210 | 274 | 2 | 66 | 2.44e-26 | 103 |
MsaG002857 | MtrunA17_Chr3g0080351 | 30.472 | 233 | 136 | 5 | 276 | 486 | 396 | 624 | 6.66e-25 | 110 |
MsaG002857 | MtrunA17_Chr2g0296781 | 27.168 | 346 | 210 | 10 | 273 | 583 | 319 | 657 | 9.19e-25 | 109 |
MsaG002857 | MtrunA17_Chr6g0477261 | 28.070 | 342 | 200 | 10 | 273 | 577 | 208 | 540 | 2.10e-24 | 108 |
MsaG002857 | MtrunA17_Chr2g0329031 | 25.000 | 352 | 230 | 8 | 264 | 593 | 326 | 665 | 1.03e-23 | 106 |
MsaG002857 | MtrunA17_Chr5g0448761 | 28.807 | 243 | 150 | 5 | 274 | 493 | 395 | 637 | 4.12e-23 | 104 |
MsaG002857 | MtrunA17_Chr5g0448761 | 26.360 | 239 | 158 | 7 | 50 | 286 | 52 | 274 | 1.56e-11 | 67.8 |
MsaG002857 | MtrunA17_Chr1g0207551 | 28.448 | 232 | 146 | 4 | 274 | 486 | 360 | 590 | 5.42e-21 | 97.8 |
MsaG002857 | MtrunA17_Chr2g0291581 | 25.641 | 312 | 193 | 7 | 269 | 544 | 379 | 687 | 2.55e-19 | 92.4 |
MsaG002857 | MtrunA17_Chr5g0440451 | 24.749 | 299 | 194 | 7 | 278 | 554 | 380 | 669 | 2.84e-19 | 92.4 |
MsaG002857 | MtrunA17_Chr5g0448511 | 27.027 | 222 | 143 | 3 | 278 | 480 | 171 | 392 | 1.23e-18 | 89.7 |
MsaG002857 | MtrunA17_Chr1g0196541 | 28.378 | 222 | 135 | 3 | 285 | 482 | 332 | 553 | 4.28e-18 | 88.6 |
MsaG002857 | MtrunA17_Chr5g0441581 | 26.244 | 221 | 140 | 3 | 285 | 482 | 360 | 580 | 1.62e-17 | 86.7 |
MsaG002857 | MtrunA17_Chr3g0082121 | 27.619 | 210 | 134 | 5 | 293 | 486 | 384 | 591 | 3.37e-17 | 85.5 |
MsaG002857 | MtrunA17_Chr2g0324011 | 27.039 | 233 | 147 | 4 | 271 | 484 | 339 | 567 | 5.67e-16 | 81.6 |
MsaG002857 | MtrunA17_Chr3g0118611 | 25.225 | 222 | 145 | 3 | 278 | 480 | 277 | 496 | 2.20e-15 | 80.1 |
MsaG002857 | MtrunA17_Chr6g0458391 | 24.057 | 212 | 144 | 2 | 292 | 486 | 555 | 766 | 5.48e-15 | 78.6 |
MsaG002857 | MtrunA17_Chr6g0458391 | 30.769 | 130 | 80 | 3 | 58 | 187 | 222 | 341 | 2.51e-12 | 70.1 |
MsaG002857 | MtrunA17_Chr2g0308841 | 24.645 | 211 | 140 | 3 | 291 | 482 | 14 | 224 | 9.38e-15 | 74.7 |
MsaG002857 | MtrunA17_Chr2g0287061 | 22.182 | 275 | 179 | 5 | 276 | 530 | 475 | 734 | 1.40e-14 | 77.4 |
MsaG002857 | MtrunA17_Chr1g0203721 | 21.114 | 341 | 235 | 6 | 285 | 593 | 406 | 744 | 2.57e-14 | 76.6 |
MsaG002857 | MtrunA17_Chr8g0363841 | 24.413 | 213 | 141 | 3 | 292 | 484 | 364 | 576 | 3.96e-14 | 75.9 |
MsaG002857 | MtrunA17_Chr2g0287651 | 27.381 | 252 | 150 | 10 | 45 | 278 | 60 | 296 | 5.10e-14 | 75.5 |
MsaG002857 | MtrunA17_Chr2g0287651 | 22.515 | 342 | 225 | 10 | 292 | 608 | 420 | 746 | 5.84e-11 | 65.9 |
MsaG002857 | MtrunA17_Chr1g0203051 | 26.866 | 201 | 128 | 3 | 291 | 472 | 421 | 621 | 5.75e-14 | 75.1 |
MsaG002857 | MtrunA17_Chr1g0203051 | 25.296 | 253 | 159 | 10 | 28 | 272 | 52 | 282 | 3.63e-12 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG002857 | AT1G10240.2 | 40.909 | 308 | 168 | 3 | 263 | 556 | 372 | 679 | 2.07e-72 | 246 |
MsaG002857 | AT1G10240.2 | 40.769 | 260 | 141 | 6 | 30 | 282 | 11 | 264 | 4.39e-50 | 185 |
MsaG002857 | AT1G10240.1 | 40.909 | 308 | 168 | 3 | 263 | 556 | 372 | 679 | 2.07e-72 | 246 |
MsaG002857 | AT1G10240.1 | 40.769 | 260 | 141 | 6 | 30 | 282 | 11 | 264 | 4.39e-50 | 185 |
MsaG002857 | AT5G28530.3 | 41.221 | 262 | 135 | 3 | 31 | 282 | 27 | 279 | 1.98e-57 | 206 |
MsaG002857 | AT5G28530.3 | 33.217 | 286 | 170 | 3 | 267 | 537 | 391 | 670 | 6.75e-46 | 173 |
MsaG002857 | AT5G28530.2 | 41.221 | 262 | 135 | 3 | 31 | 282 | 27 | 279 | 1.98e-57 | 206 |
MsaG002857 | AT5G28530.2 | 33.217 | 286 | 170 | 3 | 267 | 537 | 391 | 670 | 6.75e-46 | 173 |
MsaG002857 | AT5G28530.1 | 41.221 | 262 | 135 | 3 | 31 | 282 | 27 | 279 | 1.99e-57 | 206 |
MsaG002857 | AT5G28530.1 | 32.867 | 286 | 175 | 3 | 267 | 537 | 391 | 674 | 2.43e-45 | 171 |
MsaG002857 | AT5G28530.5 | 43.882 | 237 | 117 | 3 | 31 | 260 | 27 | 254 | 1.67e-54 | 196 |
MsaG002857 | AT5G28530.5 | 33.217 | 286 | 170 | 3 | 267 | 537 | 328 | 607 | 2.42e-46 | 173 |
MsaG002857 | AT5G28530.4 | 43.882 | 237 | 117 | 3 | 31 | 260 | 27 | 254 | 1.73e-54 | 196 |
MsaG002857 | AT5G28530.4 | 32.867 | 286 | 175 | 3 | 267 | 537 | 328 | 611 | 9.86e-46 | 172 |
MsaG002857 | AT4G15090.1 | 25.948 | 343 | 217 | 7 | 274 | 586 | 380 | 715 | 2.59e-27 | 118 |
MsaG002857 | AT4G15090.5 | 25.948 | 343 | 217 | 7 | 274 | 586 | 380 | 715 | 2.59e-27 | 118 |
MsaG002857 | AT4G15090.3 | 25.948 | 343 | 217 | 7 | 274 | 586 | 380 | 715 | 2.59e-27 | 118 |
MsaG002857 | AT4G15090.2 | 25.948 | 343 | 217 | 7 | 274 | 586 | 380 | 715 | 2.59e-27 | 118 |
MsaG002857 | AT4G15090.4 | 25.948 | 343 | 217 | 7 | 274 | 586 | 380 | 715 | 2.59e-27 | 118 |
MsaG002857 | AT4G38180.1 | 30.000 | 230 | 142 | 3 | 274 | 484 | 404 | 633 | 5.35e-25 | 110 |
MsaG002857 | AT4G38180.1 | 27.103 | 214 | 142 | 5 | 61 | 272 | 73 | 274 | 1.89e-11 | 67.8 |
MsaG002857 | AT4G38170.1 | 28.509 | 228 | 144 | 3 | 278 | 486 | 173 | 400 | 3.50e-23 | 104 |
MsaG002857 | AT3G22170.2 | 26.298 | 289 | 178 | 9 | 274 | 538 | 389 | 666 | 3.88e-23 | 105 |
MsaG002857 | AT3G22170.1 | 26.298 | 289 | 178 | 9 | 274 | 538 | 389 | 666 | 3.88e-23 | 105 |
MsaG002857 | AT1G76320.1 | 25.328 | 229 | 154 | 3 | 269 | 480 | 311 | 539 | 5.67e-21 | 98.2 |
MsaG002857 | AT1G76320.4 | 25.328 | 229 | 154 | 3 | 269 | 480 | 311 | 539 | 5.67e-21 | 98.2 |
MsaG002857 | AT1G76320.2 | 25.328 | 229 | 154 | 3 | 269 | 480 | 311 | 539 | 6.06e-21 | 97.8 |
MsaG002857 | AT1G76320.3 | 25.328 | 229 | 154 | 3 | 269 | 480 | 311 | 539 | 6.44e-21 | 97.8 |
MsaG002857 | AT4G19990.1 | 25.701 | 214 | 138 | 3 | 291 | 484 | 289 | 501 | 1.59e-19 | 93.6 |
MsaG002857 | AT4G19990.3 | 25.701 | 214 | 138 | 3 | 291 | 484 | 346 | 558 | 1.61e-19 | 93.6 |
MsaG002857 | AT4G19990.4 | 25.701 | 214 | 138 | 3 | 291 | 484 | 346 | 558 | 1.61e-19 | 93.6 |
MsaG002857 | AT4G19990.7 | 25.701 | 214 | 138 | 3 | 291 | 484 | 360 | 572 | 1.69e-19 | 93.6 |
MsaG002857 | AT4G19990.5 | 25.701 | 214 | 138 | 3 | 291 | 484 | 346 | 558 | 1.70e-19 | 93.6 |
MsaG002857 | AT4G19990.6 | 25.701 | 214 | 138 | 3 | 291 | 484 | 346 | 558 | 2.15e-19 | 93.2 |
MsaG002857 | AT4G19990.2 | 25.701 | 214 | 138 | 3 | 291 | 484 | 346 | 558 | 2.15e-19 | 93.2 |
MsaG002857 | AT5G18960.2 | 24.825 | 286 | 184 | 6 | 277 | 541 | 504 | 779 | 2.18e-18 | 90.1 |
MsaG002857 | AT5G18960.1 | 24.825 | 286 | 184 | 6 | 277 | 541 | 504 | 779 | 2.18e-18 | 90.1 |
MsaG002857 | AT2G27110.2 | 25.887 | 282 | 179 | 9 | 275 | 534 | 352 | 625 | 4.80e-18 | 89.0 |
MsaG002857 | AT2G27110.1 | 25.887 | 282 | 179 | 9 | 275 | 534 | 352 | 625 | 4.80e-18 | 89.0 |
MsaG002857 | AT2G27110.3 | 25.887 | 282 | 179 | 9 | 275 | 534 | 207 | 480 | 5.51e-18 | 88.6 |
MsaG002857 | AT2G32250.5 | 24.662 | 296 | 198 | 4 | 273 | 550 | 323 | 611 | 1.18e-17 | 87.8 |
MsaG002857 | AT1G52520.1 | 27.459 | 244 | 146 | 7 | 269 | 483 | 395 | 636 | 1.20e-17 | 87.4 |
MsaG002857 | AT2G32250.6 | 24.662 | 296 | 198 | 4 | 273 | 550 | 323 | 611 | 1.29e-17 | 87.4 |
MsaG002857 | AT2G32250.1 | 24.662 | 296 | 198 | 4 | 273 | 550 | 323 | 611 | 1.29e-17 | 87.4 |
MsaG002857 | AT2G32250.3 | 24.662 | 296 | 198 | 4 | 273 | 550 | 323 | 611 | 1.29e-17 | 87.4 |
MsaG002857 | AT2G32250.2 | 24.662 | 296 | 198 | 4 | 273 | 550 | 323 | 611 | 1.32e-17 | 87.4 |
MsaG002857 | AT2G32250.4 | 24.662 | 296 | 198 | 4 | 273 | 550 | 323 | 611 | 1.32e-17 | 87.4 |
MsaG002857 | AT2G32250.8 | 24.662 | 296 | 198 | 4 | 273 | 550 | 282 | 570 | 1.54e-17 | 87.4 |
MsaG002857 | AT2G32250.7 | 24.662 | 296 | 198 | 4 | 273 | 550 | 282 | 570 | 1.70e-17 | 87.0 |
MsaG002857 | AT3G06250.2 | 23.043 | 230 | 155 | 3 | 276 | 486 | 479 | 705 | 3.11e-16 | 83.2 |
MsaG002857 | AT3G06250.1 | 23.043 | 230 | 155 | 3 | 276 | 486 | 479 | 705 | 3.11e-16 | 83.2 |
MsaG002857 | AT3G06250.3 | 23.043 | 230 | 155 | 3 | 276 | 486 | 479 | 705 | 3.11e-16 | 83.2 |
MsaG002857 | AT1G80010.1 | 24.473 | 237 | 127 | 7 | 285 | 483 | 437 | 659 | 7.83e-11 | 65.9 |
Find 98 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATTACATGACTAGATTT+TGG | 0.131548 | 1:-48388183 | None:intergenic |
TCTTTACCCATCGTAAATTT+TGG | 0.158198 | 1:+48387550 | MsaT002857.1:CDS |
CCAATTAAAACTTACTTATT+AGG | 0.177601 | 1:-48388582 | None:intergenic |
TTCTCACAACCACGAGTTAT+TGG | 0.199264 | 1:+48386627 | MsaT002857.1:CDS |
ATCACATGTTCTTGAGTTTC+AGG | 0.210618 | 1:-48388339 | None:intergenic |
TGTTTATTTGCAAAACAAAA+TGG | 0.260407 | 1:+48386361 | MsaT002857.1:CDS |
AAAATCTGTCAAACTTGTTT+TGG | 0.261322 | 1:-48387667 | None:intergenic |
CAATATGAATTCACAATTGA+TGG | 0.266214 | 1:+48386919 | MsaT002857.1:CDS |
AATATCATCATAAAGATAAA+AGG | 0.310779 | 1:+48388312 | MsaT002857.1:CDS |
TCAAGAACATGTGATTGATT+TGG | 0.314506 | 1:+48388347 | MsaT002857.1:CDS |
CATCAATTGTGAATTCATAT+TGG | 0.326055 | 1:-48386918 | None:intergenic |
GCAGCTTCAACCCCTCCTTT+TGG | 0.339248 | 1:-48388453 | None:intergenic |
ATTCAATCATATAGTGGTAT+TGG | 0.341059 | 1:+48386829 | MsaT002857.1:CDS |
ACTCTCGCTATAAGACTTAC+AGG | 0.343612 | 1:-48386739 | None:intergenic |
ATGACAACGACGAGGCTTCT+TGG | 0.366012 | 1:-48388475 | None:intergenic |
TCAGTCTCTAATTCGATGTT+TGG | 0.372448 | 1:+48388233 | MsaT002857.1:CDS |
AACGTCACAGTCAGCATTGT+TGG | 0.377007 | 1:-48388382 | None:intergenic |
ATGGTCTCACAGTTTGGTTT+GGG | 0.387072 | 1:+48387504 | MsaT002857.1:CDS |
GTAGTTACTAAGAGAAGAAT+TGG | 0.389295 | 1:+48386568 | MsaT002857.1:CDS |
AATGGTCTCACAGTTTGGTT+TGG | 0.398201 | 1:+48387503 | MsaT002857.1:CDS |
CCTCAAGTCACTAACATTGA+TGG | 0.399508 | 1:+48386172 | MsaT002857.1:CDS |
TCAAATATTTGCCCTTCAAA+AGG | 0.411166 | 1:-48386202 | None:intergenic |
ATCCATCGGGTGTTTATAAG+AGG | 0.417116 | 1:+48386440 | MsaT002857.1:CDS |
TTTGCTGGAATGACAACAAC+AGG | 0.418779 | 1:+48387600 | MsaT002857.1:CDS |
AAAGTAATGGTCTCACAGTT+TGG | 0.427267 | 1:+48387498 | MsaT002857.1:CDS |
TTGGGCCTTAGCTTATTTGA+AGG | 0.435274 | 1:+48387569 | MsaT002857.1:CDS |
TATACGACCACCATCAACTT+TGG | 0.437731 | 1:-48387995 | None:intergenic |
CTTTAAACATGAGTTTCATA+AGG | 0.439926 | 1:+48387434 | MsaT002857.1:CDS |
GACGAGGCATGTTCTTCAAT+AGG | 0.443666 | 1:-48387864 | None:intergenic |
TGATTAGTTCCACCACAATC+TGG | 0.446933 | 1:-48388501 | None:intergenic |
AAAGACAAGTGAACGAGAAC+AGG | 0.453486 | 1:+48388269 | MsaT002857.1:CDS |
CATGTAATAAACTGCAATGA+TGG | 0.453622 | 1:+48388195 | MsaT002857.1:CDS |
GGAAAATGTGTTGTAATATG+AGG | 0.458305 | 1:-48387843 | None:intergenic |
GTTTGTCATCGTGGTGGTAT+TGG | 0.458689 | 1:+48386469 | MsaT002857.1:CDS |
ATGCGATCTTGATCAACAAT+TGG | 0.465554 | 1:-48386691 | None:intergenic |
CTCACAGTTTGGTTTGGGTG+TGG | 0.468983 | 1:+48387509 | MsaT002857.1:CDS |
TATAAGACTTACAGGGCAAC+CGG | 0.483233 | 1:-48386731 | None:intergenic |
CTTGAGTTAGAGAAAAGAAC+AGG | 0.494786 | 1:+48386763 | MsaT002857.1:CDS |
AAAACAAAAGGTCGGCCAAA+AGG | 0.495104 | 1:+48388423 | MsaT002857.1:CDS |
TTGATAGGATCATGAAGGGT+TGG | 0.498564 | 1:+48388669 | MsaT002857.1:intron |
TGAAGCAACTTAAAGGCATA+AGG | 0.499495 | 1:-48387897 | None:intergenic |
CGTTGTCATGTTCCAGATTG+TGG | 0.504732 | 1:+48388489 | MsaT002857.1:CDS |
AATTGTGAATTCATATTGGA+AGG | 0.507660 | 1:-48386914 | None:intergenic |
CCAAAAGGATCAAGACCAAA+AGG | 0.514192 | 1:+48388438 | MsaT002857.1:CDS |
CTTTCTCGTCTCCATCGAAA+AGG | 0.515070 | 1:-48388150 | None:intergenic |
GTCAAAATTAGAAATCAAGC+TGG | 0.517568 | 1:+48387786 | MsaT002857.1:CDS |
ATTGGAATGTTACGATAAGC+AGG | 0.522557 | 1:-48386673 | None:intergenic |
ATGTTATTGACTTGAGGCAA+GGG | 0.525418 | 1:-48386274 | None:intergenic |
TAAGCAATGATGCTAGTGAT+TGG | 0.525487 | 1:+48386143 | MsaT002857.1:CDS |
ACCACGCAAAACTGTTGAAG+TGG | 0.526679 | 1:+48386495 | MsaT002857.1:CDS |
TTAGAGAAAAGAACAGGCAC+AGG | 0.528687 | 1:+48386769 | MsaT002857.1:CDS |
ATACTATTATTGTCTAAAGC+CGG | 0.531055 | 1:+48386712 | MsaT002857.1:CDS |
CAACATCATACCAAAGTTGA+TGG | 0.538288 | 1:+48387985 | MsaT002857.1:CDS |
TGAACGAGAATGGAAAGTAA+TGG | 0.544871 | 1:+48387485 | MsaT002857.1:CDS |
TTGCACAACATAAGAGCCAT+TGG | 0.551354 | 1:-48387965 | None:intergenic |
CTCAAGTCACTAACATTGAT+GGG | 0.551567 | 1:+48386173 | MsaT002857.1:CDS |
TAAGAGAAGAATTGGCATTG+AGG | 0.553953 | 1:+48386576 | MsaT002857.1:CDS |
GTGCTTTGATAGGATCATGA+AGG | 0.556862 | 1:+48388664 | MsaT002857.1:intron |
CAAGTCAATAACATTGATGA+GGG | 0.558520 | 1:+48386283 | MsaT002857.1:CDS |
AAAGTCCTTCAAATAAGCTA+AGG | 0.560983 | 1:-48387574 | None:intergenic |
ACATGTGATTGATTTGGAAG+AGG | 0.565753 | 1:+48388353 | MsaT002857.1:CDS |
ATGTGATTGTAGTGCAAAGA+TGG | 0.570079 | 1:+48386546 | MsaT002857.1:CDS |
ATGTTAGTGACTTGAGGCAA+GGG | 0.572230 | 1:-48386166 | None:intergenic |
GTGTCAGAAGAGAATCCATC+GGG | 0.572540 | 1:+48386427 | MsaT002857.1:CDS |
TCATCAATGTTATTGACTTG+AGG | 0.573525 | 1:-48386280 | None:intergenic |
TAGAAATCAAGCTGGAGAAG+AGG | 0.577533 | 1:+48387794 | MsaT002857.1:CDS |
CGAGTTATTGGATGACAAAG+AGG | 0.580002 | 1:+48386639 | MsaT002857.1:CDS |
AATGTTATTGACTTGAGGCA+AGG | 0.580693 | 1:-48386275 | None:intergenic |
AGTCACTAACATTGATGGGT+GGG | 0.589348 | 1:+48386177 | MsaT002857.1:CDS |
CAAAGAATTGAAGCTGCCAA+TGG | 0.593759 | 1:+48387949 | MsaT002857.1:intron |
AATGTTAGTGACTTGAGGCA+AGG | 0.597462 | 1:-48386167 | None:intergenic |
AGGGAATTTGTTTGTCATCG+TGG | 0.598966 | 1:+48386460 | MsaT002857.1:CDS |
TCCCTCTTATAAACACCCGA+TGG | 0.599604 | 1:-48386442 | None:intergenic |
TCAAGTCAATAACATTGATG+AGG | 0.603097 | 1:+48386282 | MsaT002857.1:CDS |
CTGTTGAAGTGGAAAATCAA+AGG | 0.606328 | 1:+48386506 | MsaT002857.1:CDS |
CTTTGTCATCCAATAACTCG+TGG | 0.606716 | 1:-48386636 | None:intergenic |
AAGGATCAAGACCAAAAGGA+GGG | 0.611165 | 1:+48388442 | MsaT002857.1:CDS |
CCATCAATGTTAGTGACTTG+AGG | 0.613145 | 1:-48386172 | None:intergenic |
CTAAGGCCCAAAATTTACGA+TGG | 0.615020 | 1:-48387557 | None:intergenic |
TAAGGCCCAAAATTTACGAT+GGG | 0.615697 | 1:-48387556 | None:intergenic |
GAATTTGTTTGTCATCGTGG+TGG | 0.618777 | 1:+48386463 | MsaT002857.1:CDS |
AAGTCACTAACATTGATGGG+TGG | 0.624878 | 1:+48386176 | MsaT002857.1:CDS |
TCCATCGGGTGTTTATAAGA+GGG | 0.625908 | 1:+48386441 | MsaT002857.1:CDS |
ACGAGAACAGGTTGCCACAA+GGG | 0.630576 | 1:+48388281 | MsaT002857.1:CDS |
TGTGTCAGAAGAGAATCCAT+CGG | 0.632507 | 1:+48386426 | MsaT002857.1:CDS |
AACGAGAACAGGTTGCCACA+AGG | 0.633734 | 1:+48388280 | MsaT002857.1:CDS |
TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 1:-48388570 | None:intergenic |
TGTCATGTTCCAGATTGTGG+TGG | 0.637809 | 1:+48388492 | MsaT002857.1:CDS |
CTCTCGCTATAAGACTTACA+GGG | 0.647869 | 1:-48386738 | None:intergenic |
AAAGGATCAAGACCAAAAGG+AGG | 0.655085 | 1:+48388441 | MsaT002857.1:CDS |
TAGAGACTGAAATTTAGCAG+AGG | 0.662901 | 1:-48388220 | None:intergenic |
TGCTTTGATAGGATCATGAA+GGG | 0.676443 | 1:+48388665 | MsaT002857.1:intron |
AAGTTTGAAAGATCGAGATG+AGG | 0.682349 | 1:+48386891 | MsaT002857.1:CDS |
CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1:+48387988 | MsaT002857.1:CDS |
AGGATCAAGACCAAAAGGAG+GGG | 0.696841 | 1:+48388443 | MsaT002857.1:CDS |
AAGTCAATAACATTGATGAG+GGG | 0.714581 | 1:+48386284 | MsaT002857.1:CDS |
ATAAGGTGTGAGTATAGACG+AGG | 0.720548 | 1:-48387880 | None:intergenic |
TCTGGAACATGACAACGACG+AGG | 0.797744 | 1:-48388483 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 48386130 | 48388697 | 48386130 | ID=MsaG002857 |
Chr1 | mRNA | 48386130 | 48388697 | 48386130 | ID=MsaT002857.1;Parent=MsaG002857 |
Chr1 | exon | 48386130 | 48386943 | 48386130 | ID=MsaT002857.1.exon1;Parent=MsaT002857.1 |
Chr1 | CDS | 48386130 | 48386943 | 48386130 | ID=cds.MsaT002857.1;Parent=MsaT002857.1 |
Chr1 | exon | 48387418 | 48387698 | 48387418 | ID=MsaT002857.1.exon2;Parent=MsaT002857.1 |
Chr1 | CDS | 48387418 | 48387698 | 48387418 | ID=cds.MsaT002857.1;Parent=MsaT002857.1 |
Chr1 | exon | 48387774 | 48387910 | 48387774 | ID=MsaT002857.1.exon3;Parent=MsaT002857.1 |
Chr1 | CDS | 48387774 | 48387910 | 48387774 | ID=cds.MsaT002857.1;Parent=MsaT002857.1 |
Chr1 | exon | 48387954 | 48388589 | 48387954 | ID=MsaT002857.1.exon4;Parent=MsaT002857.1 |
Chr1 | CDS | 48387954 | 48388589 | 48387954 | ID=cds.MsaT002857.1;Parent=MsaT002857.1 |
Chr1 | exon | 48388676 | 48388697 | 48388676 | ID=MsaT002857.1.exon5;Parent=MsaT002857.1 |
Chr1 | CDS | 48388676 | 48388697 | 48388676 | ID=cds.MsaT002857.1;Parent=MsaT002857.1 |
Gene Sequence |
Protein sequence |