AlfalfaGEDB | MsaG002919

M. sativa ssp. caerulea / MsaG002919

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002919	XP_003590397.1	91.252	503	34	5	1	500	1	496	0.0	781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002919	tr\|A7UQU9\|A7UQU9_MEDTR	91.252	503	34	5	1	500	1	496	0.0	781

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002919	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002919	MtrunA17_Chr1g0179561	91.252	503	34	5	1	500	1	496	0.0	781
MsaG002919	MtrunA17_Chr7g0265561	55.647	487	164	10	2	485	1	438	1.06e-153	446
MsaG002919	MtrunA17_Chr2g0328901	37.665	454	208	10	40	487	29	413	2.44e-82	262
MsaG002919	MtrunA17_Chr1g0201951	35.837	466	228	14	42	488	34	447	8.54e-72	235
MsaG002919	MtrunA17_Chr6g0463911	64.085	142	49	2	114	254	106	246	1.73e-53	186
MsaG002919	MtrunA17_Chr6g0463911	52.000	75	36	0	412	486	368	442	4.53e-18	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002919	AT1G76870.2	49.735	189	84	4	67	253	28	207	2.50e-55	190
MsaG002919	AT1G76870.1	49.735	189	84	4	67	253	28	207	2.50e-55	190
MsaG002919	AT1G76870.3	49.735	189	84	4	67	253	28	207	2.50e-55	190
MsaG002919	AT3G10040.1	56.701	97	42	0	396	492	322	418	6.31e-31	124
MsaG002919	AT1G21200.1	43.590	78	44	0	409	486	362	439	2.85e-15	78.6
MsaG002919	AT1G21200.2	43.590	78	44	0	409	486	362	439	2.85e-15	78.6

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Find 100 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGAAATCTGTTTCAA+GGG	0.595878	1:-49284944	MsaT002919.1:CDS
AACTTATCTTCACATTGTTG+AGG	0.538324	1:+49284892	None:intergenic
AAGAGAGTGAATGATATACT+TGG	0.593533	1:-49284847	MsaT002919.1:CDS
AAGATGGAGGGAAGAGTCCT+TGG	0.426883	1:-49284222	MsaT002919.1:CDS
AAGATTAGAAAATGAGAGAA+TGG	0.405714	1:-49284035	MsaT002919.1:CDS
AAGCAAACCAGAAGGAGTGA+CGG	0.671704	1:+49285416	None:intergenic
AAGGAACAGGATAATGCAGT+TGG	0.551721	1:-49284182	MsaT002919.1:CDS
AAGTGGAGATGTTGAAGAAG+AGG	0.561038	1:-49284476	MsaT002919.1:CDS
AATAGTTGTGGTCATGGTGC+TGG	0.506112	1:-49284688	MsaT002919.1:CDS
AATGAAATGGACTGATACAA+TGG	0.534079	1:-49285070	MsaT002919.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	49283964	49285466	49283964	ID=MsaG002919
Chr1	mRNA	49283964	49285466	49283964	ID=MsaT002919.1;Parent=MsaG002919
Chr1	exon	49283964	49285466	49283964	ID=MsaT002919.1.exon1;Parent=MsaT002919.1
Chr1	CDS	49283964	49285466	49283964	ID=cds.MsaT002919.1;Parent=MsaT002919.1

Gene Sequence

>MsaT002919.1

ATGATGGAAGCTAATGGCATGTTTTCCACCGTCACTCCTTCTGGTTTGCTTGGTGTAGTTGATAATATCCCTTTACACCAACAACAACAGCAAAAACAACAGAATCTCCCTAATCAACAACAACAACAACAAAATCCTCATCATTTGCACCATTCCCAAGTTGTTTCCTATGCTCCCCAACATCATGACACTGACACAAATCAACAACATCATCATTCAATGAAACATGGGTTCCCTCCATTTTCTTCATCCAAGAACAAACATCAACAACAGCAGCAACAAAGTTCTCAGATGAGTGATGAAGATGAACCAAATTTTCAAGCTGAAGAAAGCTCTGGTGGTGATCCAAAAAGGAAGATTTCACCATGGCAAAGAATGAAATGGACTGATACAATGGTAAGGCTATTGATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTTCTGAAGTGACTGATCCAAATAAGAAAAAGACTAGTGGGTTGTTACAGAAGAAGGGAAAGTGGAAATCTGTTTCAAGGGCTATGATGGAAAAAGGGTTTTATGTGTCACCTCAACAATGTGAAGATAAGTTTAATGATTTGAATAAAAGGTATAAGAGAGTGAATGATATACTTGGTAAAGGAACAGCTTGTAGAGTTGTTGAGAATCAAGGTTTGTTGGATTCAATGGATTTGTCACCTAAGATGAAAGATGAAGTTAGGAAATTGCTTAATTCTAAGCATCTTTTCTTTAGGGAAATGTGTGCTTATCATAATAGTTGTGGTCATGGTGCTGGTGGTGGTTCTAATGTTCAACACCAAGTAGAGGGTGGAAGTGGAACAACACCACCTCAGAATCAACCTCAACAGCAGCATCAACAGCAGCAGCAGCATCAGCAGCAACAACATTGTTTTCATTCATCAGAGAATGGTGTAGGGAGTTTAGGTGTTTCAAGAGGAGAGGGATTGAGAATGTTGAAAATTGGAAGTGGAGATGTTGAAGAAGAGGATGATGAAGATGAAGAGGATGAGTCAGAGGATTTTTCTGATGAGGATGAAGATGAATCTGGAGAAGGTTGTTCAAAGGGTCAAATTGGTCATATAAATGATCAAGATGAAGAAGAGAATGATGGAAAATCATCAAGGAAAAGAGCAAGAAAAGGAGGATTTTCATTTTCAAGGTCATCATCATCAACACAATTGATGAATCAAATGAACAATGAAATAAGTGGTGTGTTTCAAGATGGAGGGAAGAGTCCTTGGGAGAAAAAACAATGGATAAGGAACAGGATAATGCAGTTGGAGGAACAGAAAATAGGATATGAGTCACAAGCATTTCAGCTTGAAAAGCAAAGGTTGAAATGGGCAAGGTATAGTAGCAAGAAAGAGAGGGAAATGGAAAGAGCTAAACTTGAGAATGAAAGGAGAAGATTAGAAAATGAGAGAATGGTTTTGCTTATTAGGAAAAAGGAGATTGAGTTGATGCATATTCAACAACAGCAGCAACACTCTTCCACCTAG

Protein sequence

>MsaT002919.1

MMEANGMFSTVTPSGLLGVVDNIPLHQQQQQKQQNLPNQQQQQQNPHHLHHSQVVSYAPQHHDTDTNQQHHHSMKHGFPPFSSSKNKHQQQQQQSSQMSDEDEPNFQAEESSGGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEVTDPNKKKTSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQGLLDSMDLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGHGAGGGSNVQHQVEGGSGTTPPQNQPQQQHQQQQQHQQQQHCFHSSENGVGSLGVSRGEGLRMLKIGSGDVEEEDDEDEEDESEDFSDEDEDESGEGCSKGQIGHINDQDEEENDGKSSRKRARKGGFSFSRSSSSTQLMNQMNNEISGVFQDGGKSPWEKKQWIRNRIMQLEEQKIGYESQAFQLEKQRLKWARYSSKKEREMERAKLENERRRLENERMVLLIRKKEIELMHIQQQQQHSST*