AlfalfaGEDB | MsaG002920

M. sativa ssp. caerulea / MsaG002920

KEGG: K09338
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009965 GO:0010016 GO:0010022 GO:0010073 GO:0010432 GO:0010433 GO:0010434 GO:0010468 GO:0010556 GO:0010557 GO:0010582 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0043565 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002920	XP_003590399.1	96.996	233	6	1	1	233	1	232	4.92e-167	470

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002920	sp\|Q9LZR0\|ATB51_ARATH	50.769	195	78	6	1	178	1	194	3.95e-48	161

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002920	tr\|G7I9C4\|G7I9C4_MEDTR	96.996	233	6	1	1	233	1	232	2.35e-167	470

TFs/TRs:

Gene ID	Type	Classification
MsaG002920	TF	HB-HD-ZIP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002920	MtrunA17_Chr7g0265521	56.327	245	82	11	1	233	1	232	3.46e-77	232
MsaG002920	MtrunA17_Chr1g0179581	98.198	111	1	1	32	142	1	110	5.16e-73	217
MsaG002920	MtrunA17_Chr1g0179591	68.182	132	37	1	102	233	3	129	2.90e-62	191
MsaG002920	MtrunA17_Chr6g0450991	56.863	102	37	1	59	153	66	167	3.45e-30	113
MsaG002920	MtrunA17_Chr4g0060031	50.420	119	52	1	49	160	84	202	1.30e-29	112
MsaG002920	MtrunA17_Chr6g0453021	55.670	97	43	0	54	150	90	186	3.26e-28	108
MsaG002920	MtrunA17_Chr8g0362151	55.670	97	36	1	57	146	74	170	6.60e-28	107
MsaG002920	MtrunA17_Chr3g0123691	38.202	178	88	5	55	221	55	221	3.50e-27	105
MsaG002920	MtrunA17_Chr8g0381741	40.645	155	79	4	48	189	39	193	1.71e-26	104
MsaG002920	MtrunA17_Chr5g0415941	54.128	109	39	2	58	155	85	193	2.35e-26	103
MsaG002920	MtrunA17_Chr5g0416391	56.180	89	39	0	59	147	76	164	2.75e-26	103
MsaG002920	MtrunA17_Chr3g0127511	49.038	104	45	2	62	158	40	142	2.72e-25	99.8
MsaG002920	MtrunA17_Chr8g0362751	53.608	97	38	1	60	149	89	185	3.12e-25	100
MsaG002920	MtrunA17_Chr3g0119291	41.722	151	79	3	59	207	58	201	4.37e-25	99.4
MsaG002920	MtrunA17_Chr7g0217111	54.639	97	37	1	58	147	78	174	2.60e-24	97.4
MsaG002920	MtrunA17_Chr8g0346251	42.308	130	56	3	64	183	45	165	4.72e-24	96.3
MsaG002920	MtrunA17_Chr5g0403701	44.340	106	59	0	55	160	48	153	8.29e-21	86.7
MsaG002920	MtrunA17_Chr4g0054421	48.315	89	46	0	60	148	127	215	1.90e-18	81.6
MsaG002920	MtrunA17_Chr7g0258831	45.161	93	51	0	60	152	160	252	2.48e-18	82.0
MsaG002920	MtrunA17_Chr5g0403691	42.478	113	58	1	55	160	48	160	2.58e-18	80.5
MsaG002920	MtrunA17_Chr4g0055851	38.971	136	66	3	60	187	120	246	2.69e-18	81.6
MsaG002920	MtrunA17_Chr1g0151971	43.119	109	55	2	47	148	110	218	1.37e-17	79.7
MsaG002920	MtrunA17_Chr1g0175651	44.944	89	49	0	60	148	154	242	1.89e-17	79.3
MsaG002920	MtrunA17_Chr5g0399491	47.191	89	47	0	60	148	136	224	6.81e-17	77.8
MsaG002920	MtrunA17_Chr8g0335131	46.067	89	48	0	60	148	146	234	9.31e-17	77.8
MsaG002920	MtrunA17_Chr2g0308611	43.820	89	50	0	60	148	200	288	1.29e-16	77.4
MsaG002920	MtrunA17_Chr4g0044091	44.681	94	52	0	55	148	60	153	1.87e-16	75.1
MsaG002920	MtrunA17_Chr5g0400781	43.820	89	50	0	60	148	123	211	2.18e-15	73.2
MsaG002920	MtrunA17_Chr4g0071411	44.186	86	48	0	63	148	91	176	2.76e-15	72.4
MsaG002920	MtrunA17_Chr3g0135331	43.820	89	50	0	60	148	145	233	1.23e-14	71.6
MsaG002920	MtrunA17_Chr2g0299031	42.697	89	51	0	60	148	82	170	3.91e-13	66.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002920	AT5G03790.1	50.769	195	78	6	1	178	1	194	4.02e-49	161
MsaG002920	AT5G03790.2	53.704	162	58	5	1	145	1	162	1.27e-42	143
MsaG002920	AT2G36610.1	49.162	179	65	7	7	162	5	180	1.79e-41	140
MsaG002920	AT4G40060.1	41.875	160	82	3	27	177	28	185	1.08e-31	117
MsaG002920	AT1G69780.1	44.755	143	66	1	57	199	82	211	1.27e-30	115
MsaG002920	AT5G15150.1	62.366	93	35	0	57	149	112	204	1.01e-29	113
MsaG002920	AT2G22430.1	54.455	101	39	1	56	149	58	158	1.02e-28	110
MsaG002920	AT5G65310.1	41.667	144	72	4	12	151	28	163	5.42e-28	108
MsaG002920	AT5G65310.2	41.667	144	72	4	12	151	10	145	5.57e-28	108
MsaG002920	AT3G01220.1	53.211	109	44	1	57	158	84	192	1.88e-27	106
MsaG002920	AT3G01470.1	38.562	153	84	2	57	202	65	214	4.13e-27	105
MsaG002920	AT2G46680.1	49.541	109	48	1	45	146	17	125	5.15e-27	104
MsaG002920	AT2G46680.2	47.826	115	53	1	45	152	17	131	3.21e-26	102
MsaG002920	AT3G61890.1	38.650	163	71	3	63	214	33	177	3.71e-26	102
MsaG002920	AT1G26960.1	42.958	142	60	3	57	193	68	193	4.09e-25	99.8
MsaG002920	AT2G18550.1	40.476	126	71	1	55	176	56	181	1.40e-24	97.4
MsaG002920	AT4G36740.1	50.526	95	47	0	55	149	50	144	3.20e-24	96.3
MsaG002920	AT4G36740.2	50.526	95	47	0	55	149	51	145	3.34e-24	96.3
MsaG002920	AT1G27045.5	49.020	102	45	1	60	154	25	126	1.69e-22	90.9
MsaG002920	AT1G27045.3	49.020	102	45	1	60	154	25	126	1.69e-22	90.9
MsaG002920	AT1G27045.1	49.020	102	45	1	60	154	68	169	1.78e-22	92.0
MsaG002920	AT1G27045.2	49.020	102	45	1	60	154	17	118	2.00e-22	90.5
MsaG002920	AT5G66700.1	48.913	92	47	0	60	151	71	162	1.20e-21	89.7
MsaG002920	AT1G27045.4	43.636	110	58	1	60	169	68	173	8.31e-21	88.2
MsaG002920	AT5G53980.1	44.211	95	53	0	60	154	11	105	3.09e-17	76.3
MsaG002920	AT4G16780.1	43.617	94	53	0	55	148	124	217	4.53e-17	78.6
MsaG002920	AT5G06710.1	44.944	89	49	0	60	148	190	278	1.35e-16	77.8
MsaG002920	AT2G01430.1	48.315	89	46	0	60	148	139	227	2.69e-16	76.3
MsaG002920	AT4G17460.1	41.489	94	55	0	55	148	130	223	3.29e-16	76.3
MsaG002920	AT3G60390.1	46.067	89	48	0	60	148	162	250	3.39e-16	76.6
MsaG002920	AT2G22800.1	42.553	94	54	0	55	148	108	201	9.02e-16	74.7
MsaG002920	AT5G47370.1	31.973	147	91	2	11	148	72	218	1.52e-15	74.3
MsaG002920	AT4G37790.1	42.553	94	54	0	55	148	121	214	1.59e-15	74.3
MsaG002920	AT2G44910.1	42.697	89	51	0	60	148	163	251	3.89e-15	73.6
MsaG002920	AT1G70920.2	41.489	94	55	0	55	148	34	127	2.12e-12	63.9
MsaG002920	AT1G70920.1	41.489	94	55	0	55	148	64	157	2.33e-12	64.3
MsaG002920	AT5G06710.4	53.846	52	24	0	60	111	190	241	9.90e-12	63.5
MsaG002920	AT2G01430.2	56.604	53	23	0	60	112	139	191	2.10e-11	61.6

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCACCTAGCACGCCTATTT+TGG	0.156053	1:-49312239	None:intergenic
TTGCTATTTGGTTCCAAAAT+AGG	0.158232	1:+49312226	MsaT002920.1:CDS
AGCCTCGTCAAATTGCTATT+TGG	0.235729	1:+49312214	MsaT002920.1:CDS
CCTTGGACACAACCTCAAAT+TGG	0.274196	1:-49312302	None:intergenic
ATGAAGCTTTCCAAGGAGTT+AGG	0.302805	1:+49312186	MsaT002920.1:CDS
AAACTGTTGTTTCAATTTAG+AGG	0.320208	1:+49314158	MsaT002920.1:CDS
CTTTCCCTTCACCTCTCTGT+TGG	0.348637	1:-49314106	None:intergenic
GAAAGCTTCATCTTCCTTTG+AGG	0.362313	1:-49312174	None:intergenic
AATTAAGGGTGATAGTTATA+AGG	0.365223	1:-49314234	None:intergenic
AGATACAATGTTCCCAGAAA+TGG	0.367312	1:+49312047	MsaT002920.1:CDS
AAAGCTTCATCTTCCTTTGA+GGG	0.383872	1:-49312173	None:intergenic
GCAGGCCAGTAGGGCAATAG+TGG	0.385106	1:-49314204	None:intergenic
GTAGTTGTAGAGGAAGCTTA+AGG	0.434188	1:-49311617	None:intergenic
GTGTTCCACTATTGCCCTAC+TGG	0.465761	1:+49314199	MsaT002920.1:CDS
TGAAGCTTTCCAAGGAGTTA+GGG	0.476348	1:+49312187	MsaT002920.1:CDS
CCAATTTGAGGTTGTGTCCA+AGG	0.478928	1:+49312302	MsaT002920.1:CDS
TGGAAGTGAAACAGCAAGAC+TGG	0.490760	1:+49312022	MsaT002920.1:CDS
TTCACTTAGACACCAATTTG+AGG	0.493024	1:+49312290	MsaT002920.1:CDS
ATACAAGTGTTCAAGTTGCT+TGG	0.493063	1:-49312265	None:intergenic
GGTACAGAAGCAGGCCAGTA+GGG	0.495028	1:-49314213	None:intergenic
AGGCTGTAGCCCTAACTCCT+TGG	0.496406	1:-49312196	None:intergenic
TGTTCAGGTTGTGAAGTTGA+AGG	0.499837	1:+49313969	MsaT002920.1:intron
GTGTGTTTGTTAAGGAATGA+TGG	0.508746	1:+49312002	MsaT002920.1:intron
GGTTCCAAAATAGGCGTGCT+AGG	0.516451	1:+49312235	MsaT002920.1:CDS
TACAACCAATGCTCATATCA+AGG	0.516637	1:+49311637	MsaT002920.1:CDS
TAGTTATAAGGTACAGAAGC+AGG	0.517499	1:-49314222	None:intergenic
CAACAGTTGAACATTGATGA+AGG	0.518077	1:+49314135	MsaT002920.1:CDS
AAAACAGCAGCTTCAGGATG+AGG	0.518698	1:+49312326	MsaT002920.1:CDS
AGCATTGGTTGTAGTTGTAG+AGG	0.525273	1:-49311627	None:intergenic
TAGATAATTATGGAATGGAA+TGG	0.526946	1:+49311559	None:intergenic
AACTCTTGTGGTAGAATGCA+AGG	0.527714	1:+49314012	MsaT002920.1:CDS
GAGTGAACAGATGGAATCAC+TGG	0.535577	1:+49312119	MsaT002920.1:CDS
AGGTACAGAAGCAGGCCAGT+AGG	0.540474	1:-49314214	None:intergenic
GCGATTAACGAGTGAACAGA+TGG	0.542500	1:+49312110	MsaT002920.1:CDS
ACAGATAGATAATTATGGAA+TGG	0.549629	1:+49311554	None:intergenic
CTTAAGGAAGACTCTGGTTG+AGG	0.556116	1:-49311601	None:intergenic
TTGCTCCAACAGAGAGGTGA+AGG	0.556685	1:+49314101	MsaT002920.1:CDS
AGATCAAACTAGACCCTCAA+AGG	0.558248	1:+49312160	MsaT002920.1:CDS
AACAGTAGAAAGCACATCAG+AGG	0.578567	1:+49314068	MsaT002920.1:CDS
AAAGAACAAGGTAACTCTTG+TGG	0.599344	1:+49314000	MsaT002920.1:CDS
AGGAAGCTTAAGGAAGACTC+TGG	0.609695	1:-49311607	None:intergenic
AAGGAAGATGAAGCTTTCCA+AGG	0.615641	1:+49312179	MsaT002920.1:CDS
AAGGCTATGTTGAAAGAACA+AGG	0.632753	1:+49313988	MsaT002920.1:CDS
TCCAAAATAGGCGTGCTAGG+TGG	0.637372	1:+49312238	MsaT002920.1:CDS
TTACTATACAGAAATGTCAG+TGG	0.650416	1:+49314035	MsaT002920.1:CDS
TGCTCCAACAGAGAGGTGAA+GGG	0.655501	1:+49314102	MsaT002920.1:CDS
AACCAAATAGCAATTTGACG+AGG	0.698239	1:-49312216	None:intergenic
TCTACGTTGCTCCAACAGAG+AGG	0.709736	1:+49314095	MsaT002920.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	49311568	49314254	49311568	ID=MsaG002920
Chr1	mRNA	49311568	49314254	49311568	ID=MsaT002920.1;Parent=MsaG002920
Chr1	exon	49311568	49311658	49311568	ID=MsaT002920.1.exon1;Parent=MsaT002920.1
Chr1	CDS	49311568	49311658	49311568	ID=cds.MsaT002920.1;Parent=MsaT002920.1
Chr1	exon	49312016	49312347	49312016	ID=MsaT002920.1.exon2;Parent=MsaT002920.1
Chr1	CDS	49312016	49312347	49312016	ID=cds.MsaT002920.1;Parent=MsaT002920.1
Chr1	exon	49313976	49314254	49313976	ID=MsaT002920.1.exon3;Parent=MsaT002920.1
Chr1	CDS	49313976	49314254	49313976	ID=cds.MsaT002920.1;Parent=MsaT002920.1

Gene Sequence

>MsaT002920.1

ATGGAATGGAATGGAAACACAAGAAGCTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAACCAATGCTCATATCAAGGAATGATGGAAGTGAAACAGCAAGACTGGACAGATACAATGTTCCCAGAAATGGAAAAAATGATGAAGTATGGGAACTTGCAAGAAAAGAAAAAGCGATTAACGAGTGAACAGATGGAATCACTGGAGAGTAGTTTTCAAGAGGAGATCAAACTAGACCCTCAAAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTACAGCCTCGTCAAATTGCTATTTGGTTCCAAAATAGGCGTGCTAGGTGGAAGACCAAGCAACTTGAACACTTGTATGATTCACTTAGACACCAATTTGAGGTTGTGTCCAAGGAAAAACAGCAGCTTCAGGATGAGGTTGTGAAGTTGAAGGCTATGTTGAAAGAACAAGGTAACTCTTGTGGTAGAATGCAAGGTTACTATACAGAAATGTCAGTGGAAGAAACAGAAACAGTAGAAAGCACATCAGAGGCAGCTCTACGTTGCTCCAACAGAGAGGTGAAGGGAAAGATTCATCAACAGTTGAACATTGATGAAGGAAACTGTTGTTTCAATTTAGAGGAGTATAACATTAATAACAGTGTTCCACTATTGCCCTACTGGCCTGCTTCTGTACCTTATAACTATCACCCTTAA

Protein sequence

>MsaT002920.1

MEWNGNTRSFVPQPESSLSFLYNYNQCSYQGMMEVKQQDWTDTMFPEMEKMMKYGNLQEKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQQLQDEVVKLKAMLKEQGNSCGRMQGYYTEMSVEETETVESTSEAALRCSNREVKGKIHQQLNIDEGNCCFNLEEYNINNSVPLLPYWPASVPYNYHP*