AlfalfaGEDB | MsaG002943

M. sativa ssp. caerulea / MsaG002943

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002943	XP_003590439.1	100.000	200	0	0	1	200	4	203	4.28e-148	419

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002943	sp\|Q1G3Q4\|RITF1_ARATH	43.750	128	70	2	4	131	6	131	1.94e-28	110

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002943	tr\|G7IA73\|G7IA73_MEDTR	100.000	200	0	0	1	200	4	203	2.04e-148	419

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG002943	TF	PLATZ

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002943	MtrunA17_Chr1g0179781	100.000	200	0	0	1	200	4	203	3.94e-152	419
MsaG002943	MtrunA17_Chr7g0265291	78.607	201	40	2	1	199	4	203	1.01e-106	305
MsaG002943	MtrunA17_Chr5g0395181	55.612	196	79	4	4	199	21	208	1.98e-72	218
MsaG002943	MtrunA17_Chr5g0411151	54.680	203	79	4	4	199	35	231	5.65e-72	218
MsaG002943	MtrunA17_Chr8g0366581	55.340	206	73	5	4	199	33	229	3.40e-70	213
MsaG002943	MtrunA17_Chr4g0040071	53.465	202	81	4	4	199	15	209	3.94e-70	212
MsaG002943	MtrunA17_Chr2g0320521	38.136	236	100	7	1	198	4	231	7.78e-46	151
MsaG002943	MtrunA17_Chr4g0020811	50.714	140	59	4	1	131	4	142	3.80e-40	134
MsaG002943	MtrunA17_Chr2g0308401	50.714	140	59	4	1	131	2	140	4.85e-40	134
MsaG002943	MtrunA17_Chr2g0320561	46.951	164	74	6	1	155	1	160	3.90e-38	131

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002943	AT1G32700.1	53.769	199	86	3	4	199	12	207	3.19e-71	215
MsaG002943	AT2G27930.1	54.327	208	66	3	1	199	1	188	6.66e-68	206
MsaG002943	AT2G27930.4	54.327	208	66	3	1	199	1	188	6.66e-68	206
MsaG002943	AT1G76590.1	46.957	230	85	4	4	198	18	245	4.12e-65	201
MsaG002943	AT1G21000.2	45.923	233	86	6	4	198	13	243	1.69e-64	199
MsaG002943	AT1G21000.1	45.923	233	86	6	4	198	16	246	2.15e-64	199
MsaG002943	AT4G17900.2	51.471	204	81	7	4	199	20	213	3.08e-64	197
MsaG002943	AT4G17900.1	51.471	204	81	7	4	199	34	227	4.05e-64	198
MsaG002943	AT1G43000.2	45.540	213	99	5	1	198	13	223	1.45e-59	186
MsaG002943	AT1G43000.1	45.540	213	99	5	1	198	6	216	1.59e-59	186

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAAAGGGATTCCTCATA+GGG	0.544259	1:+49618475	MsaT002943.1:CDS
ACACAATGTTGGTTCCTAAA+TGG	0.324494	1:+49617368	None:intergenic
AGAAACGAACTTGGTCTAAA+AGG	0.306972	1:-49617860	None:intergenic
AGAACGACAATAGAAGCAAA+AGG	0.552138	1:-49617494	None:intergenic
AGAAGTGGTTTGAGCCATTT+AGG	0.226031	1:-49617382	None:intergenic
AGGTATCAACAATGGAAGAA+GGG	0.569523	1:+49618360	MsaT002943.1:CDS
ATATCATGATGTAGTGAGGG+TGG	0.676670	1:+49617698	MsaT002943.1:CDS
ATTCCTCATAGGGCTCCTTT+TGG	0.317747	1:+49618485	MsaT002943.1:CDS
ATTTGTGAGATTTGTGGAAG+AGG	0.530195	1:+49617837	MsaT002943.1:CDS
CAAACGCAAGGAGAAGAAAA+GGG	0.546728	1:+49618462	MsaT002943.1:CDS

Showing 1 to 10 of 43 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	49617373	49618514	49617373	ID=MsaG002943
Chr1	mRNA	49617373	49618514	49617373	ID=MsaT002943.1;Parent=MsaG002943
Chr1	exon	49617373	49617546	49617373	ID=MsaT002943.1.exon1;Parent=MsaT002943.1
Chr1	CDS	49617373	49617546	49617373	ID=cds.MsaT002943.1;Parent=MsaT002943.1
Chr1	exon	49617684	49617899	49617684	ID=MsaT002943.1.exon2;Parent=MsaT002943.1
Chr1	CDS	49617684	49617899	49617684	ID=cds.MsaT002943.1;Parent=MsaT002943.1
Chr1	exon	49618302	49618514	49618302	ID=MsaT002943.1.exon3;Parent=MsaT002943.1
Chr1	CDS	49618302	49618514	49618302	ID=cds.MsaT002943.1;Parent=MsaT002943.1

Gene Sequence

>MsaT002943.1

ATGTTGGTTCCTAAATGGCTCAAACCACTTCTTAGTACACCATTTTTCAACGAGTGTCGGATTCACGCTGACGCCGCAAGGAGTGAATGTAACATGTTTTGTCTAGATTGCAATGTTGATGCCTTTTGCTTCTATTGTCGTTCTTCAAAACACAAGGATCATCAAGTCATTCAGATAAGACGATCTTCATATCATGATGTAGTGAGGGTGGCTGAAATTCAGAAAATGTTGGACATTAGTGGAGTACAAACTTATGTGATCAATAGTGCTAGAGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAATCTGGAAAAGCAGTTCCTTACATTTGTGAGATTTGTGGAAGAGGCCTTTTAGACCAAGTTCGTTTCTGTTCTTTGGGATGTAAGCTTGTAGGAATAAAGAGAAATGGGAATGCAAGCTTTGTTTTAGATGCAAATAACAATGAGGTATCAACAATGGAAGAAGGGATGTCAAGACAACAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGGCATGTATCCAGCAACTCCTCCAACACCTCCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCTCCTTTTGGACCCTAG

Protein sequence

>MsaT002943.1

MLVPKWLKPLLSTPFFNECRIHADAARSECNMFCLDCNVDAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVAEIQKMLDISGVQTYVINSARVLFLNERPQPKSGKAVPYICEICGRGLLDQVRFCSLGCKLVGIKRNGNASFVLDANNNEVSTMEEGMSRQQEEELREGSQQGMYPATPPTPPSNARRRKGIPHRAPFGP*