AlfalfaGEDB | MsaG002977

M. sativa ssp. caerulea / MsaG002977

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002977	XP_013468116.1	96.970	297	7	2	1	295	1	297	0.0	595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002977	sp\|Q681X4\|ZAT5_ARATH	38.014	292	161	7	11	295	8	286	4.30e-48	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002977	tr\|A0A072VL43\|A0A072VL43_MEDTR	96.970	297	7	2	1	295	1	297	0.0	595

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TFs/TRs:

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Gene ID	Type	Classification
MsaG002977	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000011	MsaG002977	0.826532	4.588699e-54	1.204324e-51
MsaG000030	MsaG002977	0.809213	3.607949e-50	6.045142e-48
MsaG000045	MsaG002977	0.858351	1.708730e-62	1.248349e-59
MsaG000070	MsaG002977	0.846125	4.969664e-59	2.363544e-56
MsaG000071	MsaG002977	0.823331	2.591071e-53	6.228703e-51
MsaG000083	MsaG002977	0.840182	1.874548e-57	7.359605e-55
MsaG000110	MsaG002977	0.849258	6.891190e-60	3.641540e-57
MsaG000113	MsaG002977	0.843970	1.886840e-58	8.357205e-56
MsaG000128	MsaG002977	0.812872	5.864072e-51	1.074639e-48
MsaG000140	MsaG002977	0.821553	6.676067e-53	1.529926e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002977	MtrunA17_Chr1g0180311	96.970	297	7	2	1	295	1	297	0.0	595
MsaG002977	MtrunA17_Chr1g0197281	36.944	360	145	15	5	295	9	355	5.20e-50	169
MsaG002977	MtrunA17_Chr4g0027991	38.629	321	137	11	3	295	5	293	2.57e-49	165
MsaG002977	MtrunA17_Chr2g0320311	38.486	317	136	15	9	295	10	297	1.87e-47	160
MsaG002977	MtrunA17_Chr7g0263121	37.572	173	67	5	68	240	3	134	3.50e-26	101
MsaG002977	MtrunA17_Chr7g0222831	42.553	141	38	3	80	220	12	109	1.71e-25	100
MsaG002977	MtrunA17_Chr1g0212561	42.553	141	44	4	80	220	16	119	3.65e-25	99.8
MsaG002977	MtrunA17_Chr1g0182161	34.975	203	81	5	68	269	4	156	1.11e-23	95.1
MsaG002977	MtrunA17_Chr1g0182181	38.125	160	52	5	72	230	3	116	1.22e-21	89.4
MsaG002977	MtrunA17_Chr4g0012791	33.906	233	100	8	76	264	158	380	1.63e-21	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG002977	AT5G03510.1	39.871	311	147	15	3	295	4	292	9.12e-55	179
MsaG002977	AT5G04390.1	35.112	356	145	13	19	295	14	362	1.93e-49	168
MsaG002977	AT2G28200.1	38.014	292	161	7	11	295	8	286	4.37e-49	165
MsaG002977	AT3G10470.1	31.043	393	144	14	19	295	17	398	4.18e-37	136
MsaG002977	AT2G37430.1	32.870	216	94	7	68	279	3	171	1.42e-21	89.7
MsaG002977	AT2G28710.1	32.701	211	83	8	68	276	3	156	5.86e-21	87.8
MsaG002977	AT2G45120.1	32.367	207	90	7	77	276	148	311	6.80e-20	88.2
MsaG002977	AT3G19580.1	34.872	195	95	8	76	266	67	233	1.75e-19	86.3
MsaG002977	AT3G19580.2	34.872	195	95	8	76	266	67	233	1.75e-19	86.3
MsaG002977	AT1G02040.1	35.079	191	112	5	76	265	107	286	8.41e-19	85.5

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Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTACCATCTCCACTT+AGG	0.563673	1:-50029157	MsaT002977.1:CDS
AACTTGAGGAACTTTAGTAA+TGG	0.582855	1:+50028361	None:intergenic
AAGTCATACCAAACCTAACA+AGG	0.591535	1:-50028826	MsaT002977.1:CDS
AATAATAGCAACAACAATTC+TGG	0.306288	1:-50029089	MsaT002977.1:CDS
AATAGCAACAACAATTCTGG+AGG	0.652305	1:-50029086	MsaT002977.1:CDS
ACAATTTGCCTTGTTAGGTT+TGG	0.388660	1:+50028818	None:intergenic
ACATTACAATTTGCCTTGTT+AGG	0.331743	1:+50028813	None:intergenic
ACCGGCATAGTTAACCTAAG+TGG	0.587977	1:+50029143	None:intergenic
ACTCTCTTTGCAAGCCTTCG+CGG	0.480099	1:-50028718	MsaT002977.1:CDS
ACTTCTATGAGTTTGAGTAT+CGG	0.635000	1:-50028540	MsaT002977.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	50028374	50029261	50028374	ID=MsaG002977
Chr1	mRNA	50028374	50029261	50028374	ID=MsaT002977.1;Parent=MsaG002977
Chr1	exon	50028374	50029261	50028374	ID=MsaT002977.1.exon1;Parent=MsaT002977.1
Chr1	CDS	50028374	50029261	50028374	ID=cds.MsaT002977.1;Parent=MsaT002977.1

Gene Sequence

>MsaT002977.1

ATGCAAGTCTTGGAAGATCAACTCGTGATGGTTTCCAAGGATCATACACAACAAATCATAAAAGGAAAACGAACAAAGCGTCAAAGGCTACCATCTCCACTTAGGTTAACTATGCCGGTTTCAAATTCTTGCAATGAAGGTACAAGTTATAATAATAGCAACAACAATTCTGGAGGAATTGAGTTTGTTAAAATTGATTCGCGCGACCGATCAGAAGAAGAAAAAGAAGAAGAAGATTTGGCGAATTGTCTCATTCTATTAGCTCAAGGTCATAATCATCGTCATGATCAAAACACACATGTATCAAATCATCGCGATCACAATAACAACAAATCTTCAAATTTTTATCTTTACGAATGCAAGACTTGCAATCGTTGCTTCCCTTCATTTCAAGCACTTGGTGGACATAGAGCAAGTCATACCAAACCTAACAAGGCAAATTGTAATGTTACACAACAAAAGCAAGCAGTTACAACATCGTCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCTTTGCAAGCCTTCGCGGCAACCCCTATTACTACTATTACTACTACAAAAAAATCAAAAGTTCATGAGTGTTCGATATGTGGTGCCGAATTCTCATCGGGGCAAGCGTTAGGGGGACATATGCGGAGACATAGGAATCTTGTGAACACGTCTACAACGACAACAACGACGACAACTTCTATGAGTTTGAGTATCGGTAGTCCTAAATCTCATGAAGCAAAGAAACCTAGGAATGGTTTTAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAAAGATCAATCCAAGTTTTCGTTTCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA

Protein sequence

>MsaT002977.1

MQVLEDQLVMVSKDHTQQIIKGKRTKRQRLPSPLRLTMPVSNSCNEGTSYNNSNNNSGGIEFVKIDSRDRSEEEKEEEDLANCLILLAQGHNHRHDQNTHVSNHRDHNNNKSSNFYLYECKTCNRCFPSFQALGGHRASHTKPNKANCNVTQQKQAVTTSSFVDDHYDPTMNTILSLQAFAATPITTITTTKKSKVHECSICGAEFSSGQALGGHMRRHRNLVNTSTTTTTTTTSMSLSIGSPKSHEAKKPRNGFKLDLNLPAPEVDQKDQSKFSFQPRENVIAFSNSSLVDCHY*