AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG002991

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002991 MtrunA17_Chr1g0180391 92.222 180 13 1 8 187 53 231 4.96e-123 346
MsaG002991 MtrunA17_Chr2g0327821 63.291 79 29 0 8 86 40 118 3.89e-33 118
MsaG002991 MtrunA17_Chr4g0030881 68.571 70 22 0 8 77 48 117 1.95e-31 114
MsaG002991 MtrunA17_Chr7g0247131 65.278 72 25 0 8 79 12 83 4.74e-31 113
MsaG002991 MtrunA17_Chr7g0228231 65.278 72 25 0 8 79 48 119 1.08e-30 111
MsaG002991 MtrunA17_Chr1g0186061 68.571 70 22 0 8 77 54 123 4.45e-30 110
MsaG002991 MtrunA17_Chr1g0168661 65.278 72 25 0 8 79 55 126 9.17e-30 110
MsaG002991 MtrunA17_Chr7g0274581 66.667 72 24 0 8 79 46 117 9.40e-30 108
MsaG002991 MtrunA17_Chr6g0450101 63.889 72 26 0 8 79 48 119 1.47e-29 108
MsaG002991 MtrunA17_Chr4g0048511 66.667 75 25 0 4 78 43 117 1.74e-29 111
MsaG002991 MtrunA17_Chr1g0209661 59.494 79 32 0 1 79 54 132 2.11e-29 110
MsaG002991 MtrunA17_Chr8g0349261 66.197 71 24 0 8 78 48 118 2.25e-29 110
MsaG002991 MtrunA17_Chr2g0281071 66.667 75 25 0 4 78 43 117 2.87e-29 110
MsaG002991 MtrunA17_Chr2g0323411 66.667 75 25 0 4 78 42 116 2.94e-29 110
MsaG002991 MtrunA17_Chr4g0070641 51.327 113 52 2 8 117 46 158 3.15e-29 106
MsaG002991 MtrunA17_Chr4g0022931 65.333 75 26 0 8 82 47 121 3.79e-29 108
MsaG002991 MtrunA17_Chr4g0055981 44.218 147 72 4 3 144 84 225 6.22e-29 107
MsaG002991 MtrunA17_Chr1g0203411 65.385 78 26 1 8 85 46 122 7.58e-29 108
MsaG002991 MtrunA17_Chr1g0194301 63.889 72 26 0 8 79 67 138 8.42e-29 108
MsaG002991 MtrunA17_Chr4g0022891 54.444 90 41 0 8 97 46 135 9.95e-29 107
MsaG002991 MtrunA17_Chr1g0194291 66.667 72 24 0 8 79 55 126 1.04e-28 107
MsaG002991 MtrunA17_Chr4g0070611 57.895 95 37 2 8 99 46 140 1.44e-28 108
MsaG002991 MtrunA17_Chr1g0203441 43.077 130 62 2 8 125 47 176 1.91e-28 107
MsaG002991 MtrunA17_Chr7g0217741 67.606 71 23 0 8 78 46 116 2.06e-28 107
MsaG002991 MtrunA17_Chr3g0099131 58.427 89 34 1 4 92 71 156 2.26e-28 110
MsaG002991 MtrunA17_Chr1g0151941 61.972 71 27 0 8 78 47 117 3.02e-28 105
MsaG002991 MtrunA17_Chr7g0261281 64.000 75 27 0 8 82 46 120 6.01e-28 105
MsaG002991 MtrunA17_Chr4g0028311 62.667 75 28 0 8 82 47 121 6.76e-28 106
MsaG002991 MtrunA17_Chr8g0385321 64.789 71 25 0 8 78 46 116 7.40e-28 106
MsaG002991 MtrunA17_Chr4g0022911 37.126 167 66 4 8 146 47 202 7.68e-28 105
MsaG002991 MtrunA17_Chr2g0328771 58.442 77 32 0 3 79 49 125 9.96e-28 106
MsaG002991 MtrunA17_Chr4g0022881 53.125 96 44 1 8 103 46 140 1.10e-27 103
MsaG002991 MtrunA17_Chr4g0037141 66.197 71 24 0 8 78 46 116 1.13e-27 105
MsaG002991 MtrunA17_Chr4g0022901 64.789 71 25 0 8 78 47 117 1.13e-27 105
MsaG002991 MtrunA17_Chr4g0057031 64.789 71 25 0 8 78 46 116 1.13e-27 105
MsaG002991 MtrunA17_Chr1g0193801 56.000 100 36 2 8 101 46 143 1.34e-27 107
MsaG002991 MtrunA17_Chr5g0395281 44.715 123 59 3 8 128 46 161 1.45e-27 105
MsaG002991 MtrunA17_Chr1g0167691 61.972 71 27 0 8 78 46 116 1.83e-27 103
MsaG002991 MtrunA17_Chr8g0346561 63.158 76 28 0 8 83 46 121 2.28e-27 104
MsaG002991 MtrunA17_Chr5g0410961 66.197 71 24 0 8 78 46 116 2.59e-27 105
MsaG002991 MtrunA17_Chr8g0354661 53.061 98 43 1 8 105 71 165 2.70e-27 107
MsaG002991 MtrunA17_Chr3g0088461 59.740 77 31 0 3 79 51 127 2.88e-27 105
MsaG002991 MtrunA17_Chr8g0343831 58.228 79 33 0 3 81 37 115 3.05e-27 103
MsaG002991 MtrunA17_Chr1g0187761 63.380 71 26 0 8 78 46 116 3.60e-27 103
MsaG002991 MtrunA17_Chr4g0032401 58.442 77 32 0 3 79 46 122 4.02e-27 104
MsaG002991 MtrunA17_Chr3g0131121 64.789 71 25 0 8 78 46 116 4.55e-27 103
MsaG002991 MtrunA17_Chr7g0275911 60.256 78 31 0 8 85 46 123 5.06e-27 102
MsaG002991 MtrunA17_Chr3g0115821 64.789 71 25 0 8 78 46 116 6.21e-27 104
MsaG002991 MtrunA17_Chr5g0400821 57.317 82 35 0 4 85 43 124 7.26e-27 103
MsaG002991 MtrunA17_Chr4g0042671 64.789 71 25 0 8 78 46 116 7.53e-27 105
MsaG002991 MtrunA17_Chr1g0167661 61.972 71 27 0 8 78 46 116 8.07e-27 102
MsaG002991 MtrunA17_Chr1g0211161 59.459 74 30 0 8 81 47 120 8.68e-27 101
MsaG002991 MtrunA17_Chr4g0039971 64.789 71 25 0 8 78 47 117 1.00e-26 103
MsaG002991 MtrunA17_Chr4g0044421 61.972 71 27 0 8 78 46 116 1.25e-26 100
MsaG002991 MtrunA17_Chr5g0435101 60.563 71 28 0 8 78 45 115 1.49e-26 100
MsaG002991 MtrunA17_Chr6g0453471 63.380 71 26 0 8 78 46 116 1.76e-26 103
MsaG002991 MtrunA17_Chr2g0311221 69.697 66 20 0 8 73 48 113 1.79e-26 102
MsaG002991 MtrunA17_Chr8g0334881 63.889 72 24 2 8 78 44 114 2.01e-26 102
MsaG002991 MtrunA17_Chr1g0152011 61.333 75 29 0 4 78 43 117 2.11e-26 102
MsaG002991 MtrunA17_Chr3g0117091 59.459 74 30 0 8 81 46 119 2.27e-26 102
MsaG002991 MtrunA17_Chr3g0110351 61.111 72 28 0 8 79 46 117 3.11e-26 102
MsaG002991 MtrunA17_Chr3g0103281 60.000 75 30 0 4 78 42 116 3.21e-26 102
MsaG002991 MtrunA17_Chr6g0470971 64.286 70 25 0 8 77 48 117 3.49e-26 101
MsaG002991 MtrunA17_Chr7g0270891 55.435 92 33 2 8 93 46 135 3.52e-26 102
MsaG002991 MtrunA17_Chr1g0193371 62.500 72 27 0 8 79 46 117 3.57e-26 102
MsaG002991 MtrunA17_Chr3g0080861 60.274 73 29 0 8 80 71 143 3.74e-26 103
MsaG002991 MtrunA17_Chr3g0135311 49.123 114 48 3 4 107 43 156 3.85e-26 102
MsaG002991 MtrunA17_Chr2g0327351 69.231 65 20 0 8 72 47 111 5.72e-26 101
MsaG002991 MtrunA17_Chr4g0058631 59.459 74 30 0 8 81 46 119 6.24e-26 102
MsaG002991 MtrunA17_Chr5g0434571 61.111 72 28 0 8 79 82 153 6.36e-26 102
MsaG002991 MtrunA17_Chr3g0121241 63.380 71 26 0 8 78 76 146 8.03e-26 100
MsaG002991 MtrunA17_Chr2g0323351 60.563 71 28 0 8 78 46 116 9.92e-26 99.4
MsaG002991 MtrunA17_Chr7g0217221 57.143 77 33 0 8 84 46 122 1.30e-25 99.4
MsaG002991 MtrunA17_Chr6g0452271 61.972 71 27 0 8 78 46 116 1.31e-25 100
MsaG002991 MtrunA17_Chr2g0309911 55.405 74 33 0 8 81 45 118 1.45e-25 100
MsaG002991 MtrunA17_Chr8g0342521 59.155 71 29 0 8 78 46 116 1.78e-25 100
MsaG002991 MtrunA17_Chr7g0264641 59.155 71 29 0 8 78 47 117 1.93e-25 99.0
MsaG002991 MtrunA17_Chr3g0092401 56.962 79 33 1 8 85 47 125 3.78e-25 99.0
MsaG002991 MtrunA17_Chr8g0342541 57.746 71 30 0 8 78 46 116 3.85e-25 99.8
MsaG002991 MtrunA17_Chr7g0228891 61.111 72 28 0 8 79 46 117 5.76e-25 97.8
MsaG002991 MtrunA17_Chr2g0330041 56.338 71 31 0 8 78 46 116 6.46e-25 99.8
MsaG002991 MtrunA17_Chr7g0240821 61.972 71 27 0 8 78 35 105 8.42e-25 96.3
MsaG002991 MtrunA17_Chr8g0342481 57.746 71 30 0 8 78 47 117 1.01e-24 99.4
MsaG002991 MtrunA17_Chr8g0387421 56.944 72 31 0 8 79 46 117 1.16e-24 97.8
MsaG002991 MtrunA17_Chr1g0194951 57.333 75 32 0 4 78 42 116 1.55e-24 98.2
MsaG002991 MtrunA17_Chr1g0154031 40.152 132 71 3 8 135 110 237 1.86e-24 98.6
MsaG002991 MtrunA17_Chr7g0254411 59.459 74 30 0 5 78 43 116 3.06e-24 97.1
MsaG002991 MtrunA17_Chr4g0060721 56.410 78 34 0 5 82 44 121 3.43e-24 97.1
MsaG002991 MtrunA17_Chr4g0054391 66.154 65 22 0 6 70 45 109 4.09e-24 95.9
MsaG002991 MtrunA17_Chr4g0072751 62.319 69 26 0 4 72 43 111 4.75e-24 96.7
MsaG002991 MtrunA17_Chr4g0068921 68.116 69 22 0 8 76 58 126 5.07e-24 93.6
MsaG002991 MtrunA17_Chr4g0068061 57.333 75 32 0 4 78 42 116 5.52e-24 96.3
MsaG002991 MtrunA17_Chr5g0397231 60.870 69 27 0 4 72 42 110 1.02e-23 95.9
MsaG002991 MtrunA17_Chr2g0293911 65.278 72 25 0 8 79 58 129 1.16e-23 95.5
MsaG002991 MtrunA17_Chr5g0417821 59.155 71 29 0 8 78 41 111 2.25e-23 94.0
MsaG002991 MtrunA17_Chr7g0220341 51.685 89 42 1 8 95 61 149 4.43e-23 92.8
MsaG002991 MtrunA17_Chr4g0013361 60.274 73 27 2 8 79 44 115 6.46e-23 92.8
MsaG002991 MtrunA17_Chr7g0271241 65.079 63 22 0 8 70 46 108 8.99e-23 93.6
MsaG002991 MtrunA17_Chr4g0008551 60.294 68 27 0 10 77 71 138 2.30e-22 92.0
MsaG002991 MtrunA17_Chr7g0228991 59.155 71 29 0 8 78 63 133 2.55e-22 90.9
MsaG002991 MtrunA17_Chr3g0133601 43.011 93 43 1 10 92 70 162 2.59e-22 89.7
MsaG002991 MtrunA17_Chr2g0322521 54.545 88 37 1 4 91 59 143 3.61e-22 92.0
MsaG002991 MtrunA17_Chr5g0441131 55.405 74 32 1 4 76 39 112 6.38e-22 87.8
MsaG002991 MtrunA17_Chr6g0453211 57.971 69 29 0 5 73 43 111 7.05e-22 90.5
MsaG002991 MtrunA17_Chr5g0434931 56.338 71 31 0 8 78 69 139 8.32e-22 89.7
MsaG002991 MtrunA17_Chr5g0434901 58.571 70 29 0 6 75 5 74 1.72e-21 84.7
MsaG002991 MtrunA17_Chr1g0192411 56.164 73 32 0 8 80 46 118 2.98e-21 89.7
MsaG002991 MtrunA17_Chr6g0487491 53.846 78 28 1 8 77 47 124 3.02e-21 87.8
MsaG002991 MtrunA17_Chr8g0360111 60.294 68 27 0 8 75 59 126 3.73e-21 87.4
MsaG002991 MtrunA17_Chr5g0434911 54.930 71 32 0 8 78 55 125 5.11e-21 87.4
MsaG002991 MtrunA17_Chr4g0053431 54.412 68 31 0 10 77 38 105 6.40e-21 87.0
MsaG002991 MtrunA17_Chr7g0269831 58.667 75 31 0 4 78 42 116 1.59e-20 87.4
MsaG002991 MtrunA17_Chr5g0437321 55.385 65 29 0 10 74 52 116 4.65e-20 85.1
MsaG002991 MtrunA17_Chr5g0434841 56.338 71 31 0 8 78 54 124 4.97e-20 85.5
MsaG002991 MtrunA17_Chr5g0401731 52.941 68 32 0 10 77 48 115 1.45e-19 84.3
MsaG002991 MtrunA17_Chr5g0434831 53.521 71 33 0 8 78 41 111 1.45e-19 81.6
MsaG002991 MtrunA17_Chr7g0229101 55.882 68 30 0 8 75 6 73 1.90e-19 82.0
MsaG002991 MtrunA17_Chr5g0440781 49.333 75 37 1 3 76 41 115 4.35e-19 80.5
MsaG002991 MtrunA17_Chr6g0480581 40.517 116 65 2 3 118 31 142 5.65e-19 81.3
MsaG002991 MtrunA17_Chr5g0440761 49.333 75 37 1 3 76 41 115 6.84e-19 81.6
MsaG002991 MtrunA17_Chr5g0441141 49.333 75 37 1 3 76 41 115 7.68e-19 81.6
MsaG002991 MtrunA17_Chr7g0229131 45.161 93 48 1 8 97 6 98 8.85e-19 79.3
MsaG002991 MtrunA17_Chr6g0454921 49.275 69 35 0 10 78 48 116 9.75e-19 80.1
MsaG002991 MtrunA17_Chr5g0417621 48.611 72 37 0 10 81 167 238 8.72e-18 80.1
MsaG002991 MtrunA17_Chr4g0042501 46.667 75 40 0 10 84 138 212 1.14e-17 79.7
MsaG002991 MtrunA17_Chr6g0460661 39.535 86 47 1 10 90 49 134 1.35e-17 75.9
MsaG002991 MtrunA17_Chr3g0099141 61.538 52 20 0 4 55 70 121 1.91e-17 75.1
MsaG002991 MtrunA17_Chr3g0093811 49.296 71 36 0 8 78 16 86 4.48e-17 76.6
MsaG002991 MtrunA17_Chr4g0058991 52.459 61 29 0 10 70 242 302 8.08e-17 77.4
MsaG002991 MtrunA17_Chr7g0233061 46.032 63 34 0 10 72 211 273 1.22e-16 76.6
MsaG002991 MtrunA17_Chr7g0238631 47.826 69 36 0 10 78 146 214 3.87e-16 75.5
MsaG002991 MtrunA17_Chr7g0254261 39.344 122 57 4 10 120 122 237 4.47e-16 74.7
MsaG002991 MtrunA17_Chr1g0177901 49.206 63 32 0 10 72 27 89 5.01e-16 72.8
MsaG002991 MtrunA17_Chr5g0429661 49.180 61 31 0 10 70 155 215 8.34e-16 73.9
MsaG002991 MtrunA17_Chr3g0117511 49.180 61 31 0 10 70 216 276 1.23e-15 73.9
MsaG002991 MtrunA17_Chr1g0157731 34.343 99 65 0 10 108 124 222 1.32e-15 74.3
MsaG002991 MtrunA17_Chr3g0125801 47.297 74 39 0 10 83 49 122 1.50e-15 72.8
MsaG002991 MtrunA17_Chr7g0238651 38.182 110 55 2 2 111 35 131 2.10e-15 73.2
MsaG002991 MtrunA17_Chr3g0139671 35.714 84 54 0 10 93 118 201 7.03e-15 72.0
MsaG002991 MtrunA17_Chr6g0460671 45.588 68 37 0 10 77 132 199 7.95e-15 71.2
MsaG002991 MtrunA17_Chr5g0397841 54.098 61 28 0 10 70 143 203 1.21e-14 71.2
MsaG002991 MtrunA17_Chr7g0228401 49.206 63 32 0 10 72 312 374 1.62e-14 70.9
MsaG002991 MtrunA17_Chr7g0228531 34.437 151 80 6 10 156 253 388 2.81e-14 70.1
MsaG002991 MtrunA17_Chr5g0416341 34.545 110 63 3 10 118 59 160 5.61e-13 66.2
MsaG002991 MtrunA17_Chr2g0323321 57.447 47 20 0 8 54 45 91 1.01e-12 62.0
MsaG002991 MtrunA17_Chr8g0342461 56.818 44 19 0 8 51 47 90 6.16e-12 60.5
MsaG002991 MtrunA17_Chr8g0342471 56.818 44 19 0 8 51 47 90 7.28e-12 60.5
MsaG002991 MtrunA17_Chr5g0434871 55.814 43 19 0 36 78 2 44 1.16e-11 57.8
MsaG002991 MtrunA17_Chr5g0425591 50.943 53 25 1 4 55 39 91 2.15e-11 57.8
MsaG002991 MtrunA17_Chr7g0228481 33.113 151 82 6 10 156 253 388 2.31e-11 61.6
MsaG002991 MtrunA17_Chr4g0042611 58.140 43 18 0 8 50 46 88 2.32e-11 57.8
MsaG002991 MtrunA17_Chr8g0362231 39.706 68 41 0 10 77 55 122 2.81e-11 61.2
MsaG002991 MtrunA17_Chr8g0342531 59.091 44 18 0 8 51 46 89 4.88e-11 58.5
MsaG002991 MtrunA17_Chr8g0342511 59.524 42 17 0 8 49 46 87 6.67e-11 56.6
MsaG002991 MtrunA17_Chr6g0453751 53.061 49 22 1 8 55 62 110 7.78e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG002991 AT3G53200.2 49.359 156 59 4 6 144 8 160 2.30e-39 133
MsaG002991 AT3G53200.1 49.359 156 59 4 8 146 43 195 9.29e-39 133
MsaG002991 AT5G59780.2 65.823 79 25 1 3 79 14 92 1.02e-32 117
MsaG002991 AT3G46130.3 68.056 72 23 0 8 79 11 82 5.06e-32 115
MsaG002991 AT3G46130.4 68.056 72 23 0 8 79 21 92 8.51e-32 115
MsaG002991 AT5G59780.3 68.056 72 23 0 8 79 42 113 1.02e-31 115
MsaG002991 AT3G46130.1 68.056 72 23 0 8 79 43 114 1.58e-31 115
MsaG002991 AT1G16490.1 66.216 74 25 0 8 81 48 121 2.60e-30 112
MsaG002991 AT3G27810.2 60.811 74 29 0 6 79 3 76 2.80e-30 109
MsaG002991 AT5G40350.2 43.548 124 60 2 5 118 3 126 4.61e-30 108
MsaG002991 AT3G01530.1 61.842 76 29 0 8 83 59 134 6.31e-30 109
MsaG002991 AT3G27810.1 62.500 72 27 0 8 79 54 125 1.07e-29 109
MsaG002991 AT5G14750.1 49.057 106 47 2 8 107 50 154 2.49e-29 107
MsaG002991 AT4G05100.1 66.667 75 25 0 4 78 43 117 2.52e-29 110
MsaG002991 AT4G13480.1 65.278 72 25 0 8 79 40 111 2.53e-29 109
MsaG002991 AT3G24310.1 65.278 72 25 0 8 79 52 123 2.63e-29 109
MsaG002991 AT1G79180.1 56.250 96 41 1 8 103 48 142 2.93e-29 110
MsaG002991 AT4G28110.1 65.333 75 26 0 4 78 42 116 3.65e-29 109
MsaG002991 AT3G61250.1 64.789 71 25 0 8 78 46 116 3.65e-29 109
MsaG002991 AT3G23250.1 42.763 152 81 3 8 158 46 192 3.96e-29 109
MsaG002991 AT1G79180.2 69.014 71 22 0 8 78 81 151 6.01e-29 109
MsaG002991 AT3G30210.1 71.014 69 20 0 8 76 61 129 6.11e-29 108
MsaG002991 AT5G40350.1 63.380 71 26 0 8 78 51 121 6.75e-29 107
MsaG002991 AT5G14750.3 49.038 104 46 2 10 107 18 120 8.00e-29 105
MsaG002991 AT3G01140.2 47.414 116 51 2 4 119 42 147 8.92e-29 109
MsaG002991 AT5G61420.2 42.069 145 75 3 8 149 46 184 1.06e-28 109
MsaG002991 AT3G01140.1 47.414 116 51 2 4 119 85 190 1.81e-28 109
MsaG002991 AT2G47190.1 63.889 72 26 0 8 79 54 125 1.84e-28 107
MsaG002991 AT4G26930.1 60.714 84 30 1 8 91 53 133 1.93e-28 109
MsaG002991 AT4G21440.1 64.000 75 27 0 4 78 42 116 2.08e-28 108
MsaG002991 AT1G18570.1 65.333 75 26 0 4 78 43 117 2.33e-28 108
MsaG002991 AT1G48000.1 61.644 73 28 0 8 80 66 138 2.34e-28 106
MsaG002991 AT3G12820.2 69.565 69 21 0 10 78 2 70 2.34e-28 105
MsaG002991 AT4G22680.1 66.197 71 24 0 8 78 46 116 2.86e-28 106
MsaG002991 AT5G54230.1 62.667 75 28 0 4 78 42 116 2.86e-28 107
MsaG002991 AT4G12350.1 47.368 114 50 2 8 118 46 152 3.19e-28 107
MsaG002991 AT4G34990.1 66.197 71 24 0 8 78 46 116 3.70e-28 106
MsaG002991 AT5G07700.1 62.667 75 28 0 4 78 42 116 3.90e-28 107
MsaG002991 AT5G07700.2 62.667 75 28 0 4 78 42 116 3.90e-28 107
MsaG002991 AT3G12820.1 60.000 85 34 0 8 92 48 132 3.97e-28 105
MsaG002991 AT1G68320.1 62.500 72 27 0 8 79 53 124 4.07e-28 106
MsaG002991 AT5G15310.1 64.000 75 27 0 4 78 42 116 4.59e-28 107
MsaG002991 AT5G15310.2 64.000 75 27 0 4 78 42 116 4.71e-28 107
MsaG002991 AT2G31180.1 47.414 116 49 2 8 122 46 150 4.78e-28 105
MsaG002991 AT1G25340.1 61.111 72 28 0 8 79 52 123 5.56e-28 106
MsaG002991 AT1G35515.1 43.443 122 64 1 4 120 42 163 6.34e-28 104
MsaG002991 AT1G06180.1 61.842 76 29 0 8 83 46 121 7.01e-28 105
MsaG002991 AT5G65790.1 59.036 83 34 0 4 86 43 125 7.40e-28 107
MsaG002991 AT1G22640.1 66.197 71 24 0 8 78 46 116 7.95e-28 105
MsaG002991 AT1G25340.2 60.000 75 30 0 5 79 44 118 8.12e-28 105
MsaG002991 AT5G15310.4 64.000 75 27 0 4 78 42 116 8.76e-28 105
MsaG002991 AT4G38620.1 66.197 71 24 0 8 78 46 116 1.14e-27 105
MsaG002991 AT5G07690.1 57.143 91 37 1 8 98 46 134 1.28e-27 106
MsaG002991 AT5G40330.1 44.954 109 57 1 8 116 46 151 1.65e-27 103
MsaG002991 AT1G25340.3 60.000 75 30 0 5 79 44 118 1.79e-27 105
MsaG002991 AT5G26660.2 59.211 76 31 0 4 79 11 86 2.27e-27 105
MsaG002991 AT5G55020.1 63.158 76 28 0 4 79 56 131 2.60e-27 107
MsaG002991 AT2G16720.1 64.789 71 25 0 8 78 46 116 2.77e-27 104
MsaG002991 AT4G09460.1 63.380 71 26 0 8 78 46 116 3.05e-27 103
MsaG002991 AT3G49690.1 57.831 83 35 0 4 86 43 125 3.16e-27 105
MsaG002991 AT5G23000.1 66.197 71 24 0 8 78 47 117 3.57e-27 105
MsaG002991 AT5G12870.1 58.442 77 32 0 3 79 47 123 3.61e-27 104
MsaG002991 AT3G11440.2 55.682 88 36 1 4 91 71 155 4.87e-27 106
MsaG002991 AT3G27920.1 37.725 167 69 5 8 174 48 179 5.00e-27 102
MsaG002991 AT5G65230.1 64.789 71 25 0 8 78 46 116 5.17e-27 104
MsaG002991 AT4G37780.1 58.025 81 34 0 6 86 45 125 5.73e-27 104
MsaG002991 AT3G02940.2 64.789 71 25 0 8 78 46 116 6.30e-27 104
MsaG002991 AT5G26660.1 62.500 72 27 0 8 79 46 117 7.51e-27 104
MsaG002991 AT5G57620.1 58.750 80 33 0 4 83 43 122 7.78e-27 104
MsaG002991 AT1G09540.1 63.889 72 26 0 8 79 46 117 8.00e-27 104
MsaG002991 AT3G11440.3 55.682 88 36 1 4 91 71 155 8.20e-27 106
MsaG002991 AT3G11440.4 55.682 88 36 1 4 91 71 155 8.20e-27 106
MsaG002991 AT3G11440.1 55.682 88 36 1 4 91 71 155 8.20e-27 106
MsaG002991 AT5G16770.4 66.197 71 24 0 8 78 46 116 8.92e-27 103
MsaG002991 AT5G16770.3 66.197 71 24 0 8 78 46 116 8.92e-27 103
MsaG002991 AT3G02940.1 64.789 71 25 0 8 78 46 116 1.00e-26 103
MsaG002991 AT3G02940.3 64.789 71 25 0 8 78 46 116 1.00e-26 103
MsaG002991 AT5G62320.1 63.380 71 26 0 8 78 54 124 1.06e-26 102
MsaG002991 AT5G06100.1 58.333 84 32 1 8 91 66 146 1.25e-26 105
MsaG002991 AT5G16770.1 66.197 71 24 0 8 78 46 116 1.34e-26 103
MsaG002991 AT5G16770.2 66.197 71 24 0 8 78 46 116 1.34e-26 103
MsaG002991 AT1G56160.1 66.197 71 24 0 8 78 48 118 1.41e-26 102
MsaG002991 AT3G08500.1 61.039 77 30 0 3 79 59 135 1.64e-26 103
MsaG002991 AT3G13540.1 62.162 74 28 0 8 81 57 130 1.74e-26 101
MsaG002991 AT5G06100.5 58.333 84 32 1 8 91 66 146 1.85e-26 105
MsaG002991 AT5G06100.2 58.333 84 32 1 8 91 66 146 1.85e-26 105
MsaG002991 AT5G06100.3 58.333 84 32 1 8 91 66 146 1.85e-26 105
MsaG002991 AT5G06100.4 58.333 84 32 1 8 91 66 146 1.85e-26 105
MsaG002991 AT1G57560.2 50.526 95 47 0 8 102 46 140 1.97e-26 102
MsaG002991 AT2G32460.1 49.505 101 43 2 4 104 48 140 2.01e-26 105
MsaG002991 AT1G57560.1 63.380 71 26 0 8 78 46 116 2.12e-26 102
MsaG002991 AT4G17785.2 64.789 71 25 0 8 78 47 117 2.13e-26 103
MsaG002991 AT5G10280.1 63.380 71 26 0 8 78 46 116 2.21e-26 103
MsaG002991 AT2G32460.2 49.505 101 43 2 4 104 36 128 2.47e-26 104
MsaG002991 AT4G17785.1 64.789 71 25 0 8 78 47 117 2.68e-26 103
MsaG002991 AT5G52600.1 62.857 70 26 0 8 77 46 115 2.96e-26 99.8
MsaG002991 AT3G12720.1 56.757 74 32 0 8 81 56 129 3.09e-26 102
MsaG002991 AT5G60890.1 59.211 76 31 0 4 79 42 117 5.65e-26 101
MsaG002991 AT4G01680.3 59.459 74 30 0 8 81 46 119 6.10e-26 100
MsaG002991 AT1G66230.1 61.111 72 28 0 8 79 46 117 6.22e-26 100
MsaG002991 AT5G56110.1 60.000 75 30 0 4 78 42 116 6.83e-26 101
MsaG002991 AT4G25560.1 62.857 70 26 0 8 77 44 113 1.27e-25 100
MsaG002991 AT5G35550.2 35.196 179 93 6 8 179 51 213 1.28e-25 99.8
MsaG002991 AT1G34670.1 63.380 71 26 0 8 78 46 116 1.28e-25 101
MsaG002991 AT3G48920.1 58.667 75 31 0 8 82 52 126 1.38e-25 99.8
MsaG002991 AT3G47600.2 58.667 75 31 0 5 79 37 111 1.47e-25 100
MsaG002991 AT4G01680.1 59.459 74 30 0 8 81 46 119 1.71e-25 100
MsaG002991 AT4G01680.2 59.459 74 30 0 8 81 58 131 1.88e-25 100
MsaG002991 AT5G16600.1 61.111 72 28 0 8 79 46 117 2.08e-25 100
MsaG002991 AT5G52260.1 67.143 70 23 0 8 77 46 115 2.14e-25 99.4
MsaG002991 AT2G47460.1 59.211 76 31 0 4 79 42 117 2.45e-25 100
MsaG002991 AT5G35550.1 52.174 92 40 1 8 99 48 135 3.50e-25 98.6
MsaG002991 AT3G13890.2 56.338 71 31 0 8 78 46 116 3.76e-25 100
MsaG002991 AT3G13890.1 56.338 71 31 0 8 78 55 125 4.06e-25 100
MsaG002991 AT5G62470.2 58.228 79 32 1 8 85 46 124 5.37e-25 99.8
MsaG002991 AT1G74080.1 62.319 69 26 0 8 76 46 114 7.44e-25 99.0
MsaG002991 AT3G47600.1 59.722 72 29 0 8 79 46 117 8.68e-25 99.0
MsaG002991 AT1G74650.1 52.128 94 43 1 5 96 43 136 1.02e-24 98.6
MsaG002991 AT1G63910.1 56.579 76 33 0 4 79 42 117 1.09e-24 99.0
MsaG002991 AT3G62610.1 56.579 76 33 0 4 79 42 117 1.20e-24 98.6
MsaG002991 AT2G36890.1 61.972 71 27 0 8 78 47 117 2.20e-24 97.1
MsaG002991 AT5G49330.1 60.563 71 28 0 8 78 46 116 2.92e-24 97.4
MsaG002991 AT1G08810.1 59.459 74 30 0 5 78 43 116 3.22e-24 96.3
MsaG002991 AT3G28470.1 61.538 65 25 0 8 72 46 110 3.41e-24 97.1
MsaG002991 AT3G28910.1 59.459 74 30 0 5 78 43 116 3.49e-24 97.1
MsaG002991 AT2G36890.2 61.972 71 27 0 8 78 88 158 4.03e-24 97.1
MsaG002991 AT3G60460.1 59.722 72 27 2 8 78 45 115 5.62e-24 96.3
MsaG002991 AT5G49620.1 65.278 72 25 0 8 79 60 131 1.05e-23 95.5
MsaG002991 AT5G14340.1 59.722 72 29 0 8 79 58 129 1.09e-23 94.7
MsaG002991 AT5G62470.1 57.143 77 32 1 10 85 47 123 1.30e-23 95.9
MsaG002991 AT2G26960.1 48.454 97 47 1 5 101 51 144 1.51e-23 96.7
MsaG002991 AT3G06490.1 65.278 72 25 0 8 79 53 124 2.06e-23 95.1
MsaG002991 AT1G74430.1 54.930 71 32 0 8 78 46 116 1.56e-22 91.7
MsaG002991 AT1G66370.1 46.465 99 52 1 8 105 42 140 7.42e-22 89.4
MsaG002991 AT2G26950.1 48.810 84 40 1 8 91 50 130 1.05e-21 91.3
MsaG002991 AT3G23250.2 39.286 140 79 3 20 158 1 135 1.15e-21 88.6
MsaG002991 AT1G18710.1 52.113 71 34 0 8 78 46 116 2.33e-21 88.6
MsaG002991 AT5G14750.4 48.052 77 34 1 20 90 1 77 3.02e-21 85.1
MsaG002991 AT5G14750.2 48.052 77 34 1 20 90 1 77 3.02e-21 85.1
MsaG002991 AT2G39880.1 58.333 72 30 0 10 81 83 154 4.02e-21 89.4
MsaG002991 AT3G50060.1 55.882 68 30 0 10 77 39 106 4.47e-21 88.6
MsaG002991 AT1G66380.3 58.571 70 29 0 8 77 9 78 1.08e-20 82.8
MsaG002991 AT5G67300.1 54.412 68 31 0 10 77 39 106 1.23e-20 87.4
MsaG002991 AT1G22640.3 62.712 59 22 0 20 78 1 59 1.88e-20 84.7
MsaG002991 AT5G49620.2 54.651 86 25 1 8 79 60 145 3.54e-20 86.3
MsaG002991 AT1G66380.1 58.571 70 29 0 8 77 42 111 4.32e-20 82.0
MsaG002991 AT3G55730.1 37.037 135 76 3 10 143 89 215 6.72e-20 86.3
MsaG002991 AT4G37260.1 50.000 72 36 0 10 81 46 117 4.78e-19 83.2
MsaG002991 AT1G56650.1 57.143 70 30 0 8 77 42 111 5.90e-19 81.6
MsaG002991 AT5G59780.1 71.111 45 13 0 35 79 4 48 1.10e-18 79.3
MsaG002991 AT3G46130.2 71.111 45 13 0 35 79 4 48 1.29e-18 79.7
MsaG002991 AT1G66390.1 57.143 70 30 0 8 77 42 111 1.33e-18 80.9
MsaG002991 AT2G23290.1 52.174 69 33 0 10 78 46 114 1.47e-18 81.6
MsaG002991 AT1G17950.1 35.878 131 75 2 10 140 38 159 1.97e-18 80.5
MsaG002991 AT3G09230.1 54.412 68 31 0 10 77 88 155 3.79e-18 81.3
MsaG002991 AT1G69560.1 48.611 72 37 0 10 81 140 211 6.97e-18 80.1
MsaG002991 AT5G02320.1 32.500 160 86 5 10 168 160 298 7.18e-18 80.9
MsaG002991 AT5G02320.2 32.500 160 86 5 10 168 160 298 7.18e-18 80.9
MsaG002991 AT5G02320.3 32.500 160 86 5 10 168 100 238 7.52e-18 80.9
MsaG002991 AT1G69560.2 48.611 72 37 0 10 81 156 227 8.02e-18 80.1
MsaG002991 AT4G33450.1 50.000 68 34 0 10 77 52 119 2.39e-17 77.4
MsaG002991 AT3G29020.1 40.000 90 53 1 10 99 98 186 2.43e-17 77.0
MsaG002991 AT1G26780.2 50.000 68 34 0 10 77 131 198 3.30e-17 78.6
MsaG002991 AT1G26780.1 50.000 68 34 0 10 77 131 198 3.35e-17 77.8
MsaG002991 AT3G29020.2 40.000 90 53 1 10 99 100 188 3.38e-17 77.8
MsaG002991 AT5G40360.1 28.070 171 101 2 10 180 191 339 3.43e-17 78.6
MsaG002991 AT5G17800.1 46.667 75 40 0 8 82 124 198 4.89e-17 77.8
MsaG002991 AT4G18770.1 52.459 61 29 0 10 70 250 310 5.82e-17 78.2
MsaG002991 AT2G25230.1 45.333 75 40 1 10 84 59 132 8.55e-17 75.9
MsaG002991 AT1G71030.2 50.000 66 33 0 13 78 5 70 1.21e-16 74.3
MsaG002991 AT4G00540.2 50.000 70 35 0 10 79 139 208 1.21e-16 77.0
MsaG002991 AT4G00540.1 50.000 70 35 0 10 79 137 206 1.64e-16 77.0
MsaG002991 AT1G71030.1 50.000 66 33 0 13 78 19 84 1.97e-16 73.9
MsaG002991 AT1G73410.1 50.000 70 35 0 10 79 39 108 2.97e-16 74.3
MsaG002991 AT5G58850.1 52.459 61 29 0 10 70 138 198 3.56e-16 75.9
MsaG002991 AT1G73410.2 50.000 70 35 0 10 79 39 108 3.93e-16 73.6
MsaG002991 AT5G11050.1 52.459 61 29 0 10 70 138 198 1.27e-15 74.3
MsaG002991 AT3G27785.1 49.180 61 31 0 10 70 222 282 2.06e-15 73.6
MsaG002991 AT3G09370.2 47.059 68 36 0 10 77 168 235 3.25e-15 73.2
MsaG002991 AT3G09370.1 47.059 68 36 0 10 77 163 230 3.49e-15 73.2
MsaG002991 AT3G09370.3 47.059 68 36 0 10 77 176 243 3.88e-15 73.2
MsaG002991 AT2G37630.1 42.500 80 46 0 5 84 35 114 5.63e-15 72.4
MsaG002991 AT1G18960.1 41.096 73 41 1 6 78 39 109 3.48e-14 69.7
MsaG002991 AT5G11510.2 42.029 69 40 0 10 78 114 182 3.84e-14 70.5
MsaG002991 AT5G11510.5 42.029 69 40 0 10 78 114 182 3.85e-14 70.1
MsaG002991 AT5G11510.3 42.029 69 40 0 10 78 114 182 4.03e-14 70.1
MsaG002991 AT5G11510.1 42.029 69 40 0 10 78 114 182 4.03e-14 70.1
MsaG002991 AT5G11510.4 42.029 69 40 0 10 78 114 182 4.03e-14 70.1
MsaG002991 AT4G32730.5 42.029 69 40 0 10 78 120 188 4.17e-14 70.1
MsaG002991 AT4G32730.4 42.029 69 40 0 10 78 120 188 4.17e-14 70.1
MsaG002991 AT4G32730.3 42.029 69 40 0 10 78 120 188 4.17e-14 70.1
MsaG002991 AT4G32730.2 42.029 69 40 0 10 78 120 188 4.17e-14 70.1
MsaG002991 AT4G32730.1 42.029 69 40 0 10 78 120 188 4.62e-14 70.1
MsaG002991 AT4G25560.2 58.696 46 19 0 32 77 2 47 4.03e-13 65.5
MsaG002991 AT5G40430.1 32.110 109 72 2 10 118 86 192 5.42e-13 65.9
MsaG002991 AT2G02820.3 40.000 70 42 0 10 79 63 132 1.26e-12 65.5
MsaG002991 AT2G02820.1 40.000 70 42 0 10 79 63 132 1.96e-12 65.1
MsaG002991 AT1G14350.2 40.000 70 42 0 10 79 58 127 2.22e-12 65.1
MsaG002991 AT1G14350.1 40.000 70 42 0 10 79 58 127 2.22e-12 65.1
MsaG002991 AT2G02820.2 40.000 70 42 0 10 79 63 132 2.33e-12 65.1
MsaG002991 AT5G61420.1 36.364 110 61 3 43 149 2 105 2.24e-11 61.6
MsaG002991 AT5G39700.1 36.364 77 49 0 10 86 89 165 6.59e-11 58.9

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCTCTTCAACATTAAA+AGG 0.180903 1:+50247943 None:intergenic
TATGATACTTGGGATTATTC+AGG 0.272070 1:-50246683 MsaT002991.1:CDS
ATTTCATTGTCTGTTCTTCC+TGG 0.279245 1:+50247138 None:intergenic
ACAATGAAATCAAGAATTAT+TGG 0.301012 1:-50247125 MsaT002991.1:CDS
AAAGGGCCATGTTTGAGATT+TGG 0.303849 1:+50247961 None:intergenic
AAGATTGCTCGTAGGCTTCC+AGG 0.337137 1:-50247156 MsaT002991.1:CDS
TTTGCTATTGTGCAGGGCTT+AGG 0.355465 1:-50248029 MsaT002991.1:intron
CCAAGTATCATATTCTTGTT+GGG 0.357858 1:+50246694 None:intergenic
GGTGACAAGGAAAATGAAAT+AGG 0.361070 1:-50246761 MsaT002991.1:CDS
CCCAAGTATCATATTCTTGT+TGG 0.367284 1:+50246693 None:intergenic
GAAGAATTGCAAAATGGATA+TGG 0.372171 1:-50246782 MsaT002991.1:CDS
TGGATAGAAGAATTGCAAAA+TGG 0.381205 1:-50246788 MsaT002991.1:CDS
CTTTGTCTCTCCCTCACTGT+TGG 0.392362 1:+50246889 None:intergenic
CCCAACAAGAATATGATACT+TGG 0.395763 1:-50246694 MsaT002991.1:CDS
TAGTTGTCCCTTATCAGATT+GGG 0.403361 1:-50246852 MsaT002991.1:CDS
TCTCATTCCCCAATCTGATA+AGG 0.405428 1:+50246844 None:intergenic
TGGAAGCCTACGAGCAATCT+TGG 0.418838 1:+50247158 None:intergenic
CTCATTCCCCAATCTGATAA+GGG 0.425206 1:+50246845 None:intergenic
GTGGTAAAAGCTGTAGGTTA+AGG 0.437445 1:-50248002 MsaT002991.1:CDS
AGTTCAACTTCAGCAGCAAT+GGG 0.438061 1:-50247914 MsaT002991.1:CDS
GATATTCTACATTCATGATA+AGG 0.461578 1:+50246815 None:intergenic
TAGTTCAACTTCAGCAGCAA+TGG 0.486089 1:-50247915 MsaT002991.1:CDS
ATAGTTGTCCCTTATCAGAT+TGG 0.503107 1:-50246853 MsaT002991.1:CDS
TGTTGTTGGAATCATGTGCT+AGG 0.515250 1:+50246930 None:intergenic
TCTCCTCTTCAACATTAAAA+GGG 0.538793 1:+50247944 None:intergenic
ATGAATGTAGAATATCAGAT+TGG 0.543464 1:-50246808 MsaT002991.1:CDS
CAAGTATCATATTCTTGTTG+GGG 0.561630 1:+50246695 None:intergenic
CCAACAAGAATATGATACTT+GGG 0.577052 1:-50246693 MsaT002991.1:CDS
AAATATCAAGCAGCCATGCA+AGG 0.579777 1:-50248531 None:intergenic
GTAAAAGCTGTAGGTTAAGG+TGG 0.582682 1:-50247999 MsaT002991.1:CDS
GGAGAAGTGGTAAAAGCTGT+AGG 0.586752 1:-50248008 MsaT002991.1:CDS
CAACAGTGAGGGAGAGACAA+AGG 0.588133 1:-50246888 MsaT002991.1:CDS
AGAGTACAAGTTCAACAAGA+AGG 0.589009 1:-50247084 MsaT002991.1:intron
TGTGCAGGGCTTAGGAGAAG+TGG 0.594454 1:-50248021 MsaT002991.1:intron
AGTTGTCCCTTATCAGATTG+GGG 0.595030 1:-50246851 MsaT002991.1:CDS
GATGTGATTTCCAACAGTGA+GGG 0.606719 1:-50246899 MsaT002991.1:CDS
CTTCGTCCAAATCTCAAACA+TGG 0.606795 1:-50247967 MsaT002991.1:CDS
TGATGTGATTTCCAACAGTG+AGG 0.650894 1:-50246900 MsaT002991.1:CDS
GCAAAATGGATATGGTGACA+AGG 0.652819 1:-50246774 MsaT002991.1:CDS
GGTGGTCCAAGATTGCTCGT+AGG 0.699809 1:-50247164 MsaT002991.1:CDS
GTTCAACTTCAGCAGCAATG+GGG 0.741229 1:-50247913 MsaT002991.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 50246664 50248538 50246664 ID=MsaG002991
Chr1 mRNA 50246664 50248538 50246664 ID=MsaT002991.1;Parent=MsaG002991
Chr1 exon 50246664 50246977 50246664 ID=MsaT002991.1.exon4;Parent=MsaT002991.1
Chr1 CDS 50246664 50246977 50246664 ID=cds.MsaT002991.1;Parent=MsaT002991.1
Chr1 exon 50247085 50247185 50247085 ID=MsaT002991.1.exon3;Parent=MsaT002991.1
Chr1 CDS 50247085 50247185 50247085 ID=cds.MsaT002991.1;Parent=MsaT002991.1
Chr1 exon 50247907 50248036 50247907 ID=MsaT002991.1.exon2;Parent=MsaT002991.1
Chr1 CDS 50247907 50248036 50247907 ID=cds.MsaT002991.1;Parent=MsaT002991.1
Chr1 exon 50248520 50248538 50248520 ID=MsaT002991.1.exon1;Parent=MsaT002991.1
Chr1 CDS 50248520 50248538 50248520 ID=cds.MsaT002991.1;Parent=MsaT002991.1
Gene Sequence

>MsaT002991.1

ATGCAAGGAGAAAATTTGCGGCTTAGGAGAAGTGGTAAAAGCTGTAGGTTAAGGTGGTTGAACTATCTTCGTCCAAATCTCAAACATGGCCCTTTTAATGTTGAAGAGGAGAGACTTATAGTTCAACTTCAGCAGCAATGGGGTAACAAGTGGTCCAAGATTGCTCGTAGGCTTCCAGGAAGAACAGACAATGAAATCAAGAATTATTGGAGAACTCATTTACAAAAGAGAGTACAAGTTCAACAAGAAGGTGAGTTCATGTATGAAGTAGAAAACCTAGCACATGATTCCAACAACAAAAGCATTGATGTGATTTCCAACAGTGAGGGAGAGACAAAGGAAAGCTCTGTAGATAGTTGTCCCTTATCAGATTGGGGAATGAGAAACTCACCTTATCATGAATGTAGAATATCAGATTGGATAGAAGAATTGCAAAATGGATATGGTGACAAGGAAAATGAAATAGGACAAGATTTTAATAGAATAAATGGATCAATGTATGAATATAATCCCCAACAAGAATATGATACTTGGGATTATTCAGGTTTTCTATGGGACTTGTGA
Protein sequence

>MsaT002991.1

MQGENLRLRRSGKSCRLRWLNYLRPNLKHGPFNVEEERLIVQLQQQWGNKWSKIARRLPGRTDNEIKNYWRTHLQKRVQVQQEGEFMYEVENLAHDSNNKSIDVISNSEGETKESSVDSCPLSDWGMRNSPYHECRISDWIEELQNGYGDKENEIGQDFNRINGSMYEYNPQQEYDTWDYSGFLWDL*