AlfalfaGEDB | MsaG003007

M. sativa ssp. caerulea / MsaG003007

KEGG: -
GO: -
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003007	RHN79737.1	66.045	268	34	5	1	267	5	216	3.32e-104	317

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003007	tr\|A0A396JYN9\|A0A396JYN9_MEDTR	66.045	268	34	5	1	267	5	216	1.58e-104	317

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003007	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003007	MtrunA17_Chr1g0180581	66.045	268	34	5	1	267	5	216	3.05e-108	317
MsaG003007	MtrunA17_Chr1g0180581	70.588	51	12	1	338	388	173	220	4.42e-12	65.1
MsaG003007	MtrunA17_Chr7g0214511	54.255	282	68	10	5	239	14	281	1.04e-77	241
MsaG003007	MtrunA17_Chr1g0193731	53.704	324	76	15	6	304	15	289	3.28e-77	240
MsaG003007	MtrunA17_Chr1g0193731	60.194	103	35	3	286	388	199	295	3.01e-19	87.4
MsaG003007	MtrunA17_Chr1g0180571	73.944	142	37	0	169	310	1	142	1.48e-56	182
MsaG003007	MtrunA17_Chr1g0180571	77.011	87	20	0	300	386	54	140	5.99e-33	120
MsaG003007	MtrunA17_Chr1g0169561	41.739	230	78	8	53	239	94	310	2.63e-34	129
MsaG003007	MtrunA17_Chr1g0169521	41.739	230	78	9	53	239	94	310	6.97e-33	125
MsaG003007	MtrunA17_Chr1g0174001	42.487	193	74	7	79	239	2	189	2.56e-30	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAAAGAAGGGTATTT+GGG	0.313760	1:-50433725	None:intergenic
AAATTCTTCAAATCATCACT+TGG	0.555556	1:-50434487	None:intergenic
AAATTCTTCAAATCATCACT+TGG	0.555556	1:-50434604	None:intergenic
AAATTCTTCAAATCATCACT+TGG	0.555556	1:-50434721	None:intergenic
AAATTCTTCACACCATCACT+TGG	0.521646	1:-50434682	None:intergenic
AAATTCTTCACATCATCACT+TGG	0.564670	1:-50434526	None:intergenic
AAATTCTTCACATCATCACT+TGG	0.564670	1:-50434565	None:intergenic
AAATTCTTCACATCATCACT+TGG	0.564670	1:-50434643	None:intergenic
AAATTCTTCACATCATCACT+TGG	0.564670	1:-50434760	None:intergenic
AAATTCTTTACATCATAACT+TGG	0.493765	1:-50434370	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	50433665	50434831	50433665	ID=MsaG003007
Chr1	mRNA	50433665	50434831	50433665	ID=MsaT003007.1;Parent=MsaG003007
Chr1	exon	50433665	50434831	50433665	ID=MsaT003007.1.exon1;Parent=MsaT003007.1
Chr1	CDS	50433665	50434831	50433665	ID=cds.MsaT003007.1;Parent=MsaT003007.1

Gene Sequence

>MsaT003007.1

ATGTCCTTTTCCGATCATAAACCAAAAACCAATCATGTTCATCATAGCTTCCTTCAAAAACCCAAATACCCTTCTTTCTCTTTCATTGATTATTCAAACCCTAATCATAACAAAACCAAAAACTTTTCTTCAACAACTAATGATGCTGGAAAACAGAAGATCATATGGTTTTTTTCTTATTCTGTTCCTAATGATGCTGGAAAACAAAAGAAACATTCATGTGATGTTTGCAACAAGGTTTTTACTTCTAACAAAGCTTTGAATGGACATATGATATGTCACTCACCAACTGTTGCACCATCTTCCTCTGCAAGCTATGAGGATCACTTTCTACCACCTAAGAAACGGCAAGCGCTAAGAAGTAGAAGAAGTTATGTGAGTAATGATGATGATACTATTGCAGCTGAAACTCTGTTGCATATATCTCGTGGCAGTTTCGAGGGATCAACTACCAATATCAATGTGAATCACCGTGGTGCTAAAAGGAAAAAACTTTTTTGCAATATGATGAATGATGATAATAATAAGAAGAAGAATAAGGAACAAGATGCGTTCCTAACAAGTGCTAAAGGCAAGATTTTTCAAACATCACATGATTGCAAGGAACTTGCTGCTTCTAATCATGGTATTGAAGAGAAGAAGATTAATGAAGGTGAAACAGAATTAGGGTCAAAAGTTGTGAAGAATTTTGATTTGAACGAGCTTCCAAGTTATGATGTAAAGAATTTTGATTTGAACGAGCTTCCAAGTGATGATGTGAAGAATCTTGATTTGAACGAGCTTCCAAGTGAAGATGTGAAGAACTTTGATTTAAACGAGCTTCCAAGTGATGATTTGAAGAATTTTTATTTGAACGAGCTTCCAAGTGATGATGTGAAGAATTTTGATTTGAACGAGCTTCCAAGTGATGATGTGAAGAATTTTGATTTAAACGAGCTTCCAAGTGATGATTTGAAGAATTTTTATTTGAACGAGCTTCCAAGTGATGATGTGAAGAATTTTGATTTGAACGAGCTTCCAAGTGATGGTGTGAAGAATTTTGATTTGAACGAGCTTCCAAGTGATGATTTGAAGAATTTTTATTTGAACGAGCTTCCAAGTGATGATGTGAAGAATTTTGATTTGAACGACCTTCCAAATGATGATTTTGAAGATGAAACCAATTAG

Protein sequence

>MsaT003007.1

MSFSDHKPKTNHVHHSFLQKPKYPSFSFIDYSNPNHNKTKNFSSTTNDAGKQKIIWFFSYSVPNDAGKQKKHSCDVCNKVFTSNKALNGHMICHSPTVAPSSSASYEDHFLPPKKRQALRSRRSYVSNDDDTIAAETLLHISRGSFEGSTTNINVNHRGAKRKKLFCNMMNDDNNKKKNKEQDAFLTSAKGKIFQTSHDCKELAASNHGIEEKKINEGETELGSKVVKNFDLNELPSYDVKNFDLNELPSDDVKNLDLNELPSEDVKNFDLNELPSDDLKNFYLNELPSDDVKNFDLNELPSDDVKNFDLNELPSDDLKNFYLNELPSDDVKNFDLNELPSDGVKNFDLNELPSDDLKNFYLNELPSDDVKNFDLNDLPNDDFEDETN*