AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003010 MtrunA17_Chr1g0180591 91.620 179 15 0 1 179 1 179 5.91e-120 336
MsaG003010 MtrunA17_Chr1g0169761 79.888 179 36 0 1 179 1 179 2.06e-103 294
MsaG003010 MtrunA17_Chr1g0175601 80.556 180 34 1 1 179 1 180 1.89e-101 289
MsaG003010 MtrunA17_Chr1g0175611 82.143 168 30 0 1 168 1 168 1.19e-100 287
MsaG003010 MtrunA17_Chr4g0074101 69.898 196 42 1 1 179 1 196 3.48e-95 274
MsaG003010 MtrunA17_Chr8g0376821 80.240 167 33 0 1 167 1 167 3.77e-95 273
MsaG003010 MtrunA17_Chr8g0357771 57.143 175 75 0 1 175 1 175 9.58e-71 212
MsaG003010 MtrunA17_Chr8g0356071 52.976 168 73 2 1 168 1 162 6.18e-55 171
MsaG003010 MtrunA17_Chr4g0052061 40.244 164 86 3 1 164 1 152 1.13e-30 109
MsaG003010 MtrunA17_Chr3g0119901 38.824 170 85 5 1 157 8 171 1.01e-28 105
MsaG003010 MtrunA17_Chr3g0099411 43.571 140 72 5 2 136 9 146 5.84e-27 101
MsaG003010 MtrunA17_Chr3g0085241 45.614 114 58 2 1 111 40 152 1.83e-26 100
MsaG003010 MtrunA17_Chr5g0419601 34.337 166 93 4 1 152 8 171 5.46e-25 97.1
MsaG003010 MtrunA17_Chr1g0206991 59.420 69 28 0 2 70 9 77 8.95e-25 95.1
MsaG003010 MtrunA17_Chr3g0099421 46.491 114 56 3 2 112 34 145 1.16e-24 96.7
MsaG003010 MtrunA17_Chr1g0206721 46.491 114 56 3 2 112 9 120 1.22e-24 95.9
MsaG003010 MtrunA17_Chr1g0206701 46.491 114 56 3 2 112 9 120 2.12e-24 95.5
MsaG003010 MtrunA17_Chr4g0052081 39.456 147 82 3 1 143 1 144 2.36e-24 93.6
MsaG003010 MtrunA17_Chr2g0292791 45.614 114 57 3 2 112 9 120 8.03e-24 94.0
MsaG003010 MtrunA17_Chr3g0089141 53.247 77 36 0 2 78 9 85 1.51e-23 92.8
MsaG003010 MtrunA17_Chr1g0149391 42.342 111 61 2 2 110 9 118 1.65e-23 92.8
MsaG003010 MtrunA17_Chr1g0208561 53.247 77 36 0 2 78 9 85 1.87e-23 92.8
MsaG003010 MtrunA17_Chr8g0355091 45.614 114 57 3 2 112 9 120 2.46e-23 92.4
MsaG003010 MtrunA17_Chr2g0300421 45.098 102 52 2 2 100 9 109 1.11e-22 89.4
MsaG003010 MtrunA17_Chr1g0187361 46.226 106 55 2 2 107 9 112 1.26e-22 90.5
MsaG003010 MtrunA17_Chr1g0188671 41.284 109 58 2 2 108 47 151 1.70e-22 91.3
MsaG003010 MtrunA17_Chr2g0325971 45.098 102 52 2 2 100 9 109 5.09e-22 89.0
MsaG003010 MtrunA17_Chr1g0208581 52.055 73 35 0 2 74 9 81 1.02e-21 88.2
MsaG003010 MtrunA17_Chr3g0089151 48.718 78 40 0 2 79 9 86 1.18e-21 85.5
MsaG003010 MtrunA17_Chr5g0422421 53.623 69 32 0 2 70 9 77 2.01e-21 87.4
MsaG003010 MtrunA17_Chr2g0317451 50.649 77 37 1 2 78 9 84 2.25e-21 87.4
MsaG003010 MtrunA17_Chr2g0317481 50.649 77 37 1 2 78 9 84 2.40e-21 87.4
MsaG003010 MtrunA17_Chr8g0379021 45.349 86 45 1 2 85 12 97 5.01e-21 85.1
MsaG003010 MtrunA17_Chr2g0300441 44.554 101 54 1 2 100 9 109 5.62e-21 86.3
MsaG003010 MtrunA17_Chr2g0333981 43.750 96 48 2 1 94 11 102 2.17e-20 83.2
MsaG003010 MtrunA17_Chr5g0422941 40.566 106 61 2 2 107 9 112 9.28e-20 83.2
MsaG003010 MtrunA17_Chr4g0018951 40.152 132 63 5 17 140 27 150 1.65e-19 80.9
MsaG003010 MtrunA17_Chr4g0020221 50.725 69 34 0 1 69 1 69 2.83e-19 82.0
MsaG003010 MtrunA17_Chr1g0206691 57.812 64 26 1 18 80 8 71 1.63e-18 79.3
MsaG003010 MtrunA17_Chr7g0238991 58.065 62 26 0 18 79 37 98 1.74e-18 80.1
MsaG003010 MtrunA17_Chr5g0427401 49.296 71 36 0 1 71 1 71 3.48e-18 78.6
MsaG003010 MtrunA17_Chr1g0187351 59.259 54 22 0 18 71 8 61 1.10e-17 73.6
MsaG003010 MtrunA17_Chr5g0427921 53.333 60 28 0 1 60 1 60 2.38e-17 72.4
MsaG003010 MtrunA17_Chr1g0173161 56.140 57 25 0 1 57 1 57 2.55e-17 72.8
MsaG003010 MtrunA17_Chr2g0279821 50.725 69 34 0 1 69 1 69 2.66e-17 76.6
MsaG003010 MtrunA17_Chr6g0474371 36.232 138 80 4 1 134 1 134 2.68e-17 75.5
MsaG003010 MtrunA17_Chr3g0097101 50.725 69 34 0 1 69 16 84 6.63e-17 75.5
MsaG003010 MtrunA17_Chr8g0351041 47.826 69 36 0 1 69 1 69 7.88e-17 73.6
MsaG003010 MtrunA17_Chr8g0351051 44.737 76 42 0 1 76 1 76 7.95e-17 75.5
MsaG003010 MtrunA17_Chr4g0049541 47.826 69 36 0 1 69 1 69 1.01e-16 74.7
MsaG003010 MtrunA17_Chr3g0077501 47.826 69 36 0 1 69 1 69 1.05e-16 74.7
MsaG003010 MtrunA17_Chr4g0049901 40.000 115 46 3 1 97 27 136 1.68e-16 74.3
MsaG003010 MtrunA17_Chr5g0404951 48.387 62 32 0 1 62 1 62 3.29e-16 73.6
MsaG003010 MtrunA17_Chr8g0380021 37.736 106 63 1 1 106 17 119 3.41e-16 73.6
MsaG003010 MtrunA17_Chr7g0246431 36.538 104 63 1 1 104 1 101 3.49e-16 73.2
MsaG003010 MtrunA17_Chr1g0204111 46.479 71 38 0 1 71 17 87 5.05e-16 73.6
MsaG003010 MtrunA17_Chr4g0057151 46.377 69 37 0 1 69 1 69 5.27e-16 72.4
MsaG003010 MtrunA17_Chr8g0351031 47.826 69 36 0 1 69 1 69 5.39e-16 72.8
MsaG003010 MtrunA17_Chr2g0284911 47.826 69 36 0 1 69 16 84 7.77e-16 73.2
MsaG003010 MtrunA17_Chr5g0411691 47.826 69 36 0 1 69 1 69 8.62e-16 72.4
MsaG003010 MtrunA17_Chr2g0308251 42.857 70 40 0 1 70 1 70 1.03e-15 68.6
MsaG003010 MtrunA17_Chr5g0425191 57.692 52 22 0 1 52 1 52 1.13e-15 69.3
MsaG003010 MtrunA17_Chr4g0071601 49.296 71 36 0 1 71 11 81 1.94e-15 70.5
MsaG003010 MtrunA17_Chr7g0246381 44.928 69 33 1 1 64 1 69 2.15e-15 67.4
MsaG003010 MtrunA17_Chr3g0111841 48.276 58 30 0 8 65 2 59 3.65e-15 67.0
MsaG003010 MtrunA17_Chr1g0164791 46.479 71 36 2 1 69 1 71 4.53e-15 70.5
MsaG003010 MtrunA17_Chr3g0142191 48.387 62 32 0 1 62 1 62 5.84e-15 70.1
MsaG003010 MtrunA17_Chr5g0420081 49.123 57 29 0 1 57 1 57 6.22e-15 70.1
MsaG003010 MtrunA17_Chr8g0366231 37.755 98 53 2 1 90 1 98 7.53e-15 70.1
MsaG003010 MtrunA17_Chr5g0420091 50.877 57 28 0 1 57 1 57 7.86e-15 69.7
MsaG003010 MtrunA17_Chr3g0111931 38.202 89 50 1 18 101 6 94 8.95e-15 67.0
MsaG003010 MtrunA17_Chr4g0061691 41.429 70 40 1 1 69 1 70 9.19e-15 69.7
MsaG003010 MtrunA17_Chr8g0377561 50.877 57 28 0 1 57 1 57 9.61e-15 66.6
MsaG003010 MtrunA17_Chr7g0220111 50.877 57 28 0 1 57 1 57 1.11e-14 69.7
MsaG003010 MtrunA17_Chr4g0018421 43.836 73 40 1 1 72 1 73 1.48e-14 68.6
MsaG003010 MtrunA17_Chr4g0061671 48.276 58 30 0 1 58 1 58 1.77e-14 68.2
MsaG003010 MtrunA17_Chr3g0122251 52.632 57 27 0 1 57 1 57 2.49e-14 68.6
MsaG003010 MtrunA17_Chr4g0044071 54.902 51 23 0 1 51 1 51 2.86e-14 65.9
MsaG003010 MtrunA17_Chr7g0220121 40.000 70 41 1 1 69 1 70 3.36e-14 68.6
MsaG003010 MtrunA17_Chr3g0134451 42.466 73 41 1 1 72 1 73 3.55e-14 68.9
MsaG003010 MtrunA17_Chr5g0412271 49.123 57 29 0 1 57 1 57 3.58e-14 68.2
MsaG003010 MtrunA17_Chr5g0417661 51.852 54 26 0 1 54 56 109 3.61e-14 65.9
MsaG003010 MtrunA17_Chr5g0412461 49.123 57 29 0 1 57 1 57 3.95e-14 67.8
MsaG003010 MtrunA17_Chr6g0455511 50.877 57 28 0 1 57 1 57 4.57e-14 68.2
MsaG003010 MtrunA17_Chr1g0159661 36.923 65 41 0 1 65 1 65 7.73e-14 66.2
MsaG003010 MtrunA17_Chr3g0125241 38.462 65 40 0 1 65 26 90 1.32e-13 66.2
MsaG003010 MtrunA17_Chr1g0166611 65.909 44 15 0 15 58 19 62 2.50e-13 63.9
MsaG003010 MtrunA17_Chr4g0060841 37.662 77 46 1 1 75 1 77 6.00e-12 62.8
MsaG003010 MtrunA17_Chr3g0111831 48.077 52 27 0 18 69 20 71 1.28e-11 58.2
MsaG003010 MtrunA17_Chr8g0345001 42.254 71 41 0 3 73 19 89 2.48e-11 59.7
MsaG003010 MtrunA17_Chr3g0093131 49.057 53 26 1 19 70 36 88 7.30e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003010 AT2G34440.1 43.275 171 87 4 1 161 1 171 6.75e-37 126
MsaG003010 AT3G66656.1 41.243 177 89 3 1 162 1 177 7.85e-31 110
MsaG003010 AT5G60440.1 39.490 157 76 2 2 154 7 148 8.49e-29 108
MsaG003010 AT2G24840.1 31.937 191 88 4 1 167 62 234 6.94e-28 105
MsaG003010 AT1G01530.1 38.849 139 81 2 1 139 6 140 5.08e-22 89.7
MsaG003010 AT5G13790.2 43.564 101 45 2 1 100 1 90 3.11e-20 85.5
MsaG003010 AT5G13790.1 50.725 69 34 0 1 69 1 69 5.12e-19 82.0
MsaG003010 AT3G61120.1 49.275 69 35 0 1 69 1 69 1.33e-18 80.5
MsaG003010 AT3G57230.2 33.333 165 83 6 1 158 1 145 1.76e-18 77.8
MsaG003010 AT4G36590.1 55.738 61 27 0 2 62 7 67 1.99e-18 80.1
MsaG003010 AT1G65360.1 52.381 63 30 0 1 63 6 68 2.23e-18 79.7
MsaG003010 AT3G57390.3 49.275 69 35 0 1 69 1 69 5.18e-18 78.6
MsaG003010 AT4G37940.1 50.725 69 34 0 1 69 1 69 8.60e-18 78.2
MsaG003010 AT3G57390.1 49.275 69 35 0 1 69 1 69 9.44e-18 78.6
MsaG003010 AT1G47760.1 53.333 60 28 0 1 60 1 60 9.71e-18 77.0
MsaG003010 AT3G57230.1 49.275 69 35 0 1 69 1 69 9.82e-18 78.2
MsaG003010 AT3G57230.4 49.275 69 35 0 1 69 1 69 9.82e-18 78.2
MsaG003010 AT4G37940.4 50.725 69 34 0 1 69 1 69 1.11e-17 77.4
MsaG003010 AT3G04100.1 49.254 67 34 0 2 68 14 80 1.15e-17 77.4
MsaG003010 AT2G45660.2 31.034 145 93 3 1 144 1 139 1.24e-17 76.3
MsaG003010 AT4G37940.3 50.725 69 34 0 1 69 1 69 2.24e-17 75.9
MsaG003010 AT1G28460.1 31.646 158 87 2 2 141 8 162 2.56e-17 75.9
MsaG003010 AT4G22950.2 47.826 69 36 0 1 69 1 69 2.62e-17 75.5
MsaG003010 AT2G45660.1 30.968 155 92 4 1 150 1 145 3.44e-17 76.3
MsaG003010 AT2G45650.1 47.826 69 36 0 1 69 1 69 3.70e-17 76.6
MsaG003010 AT5G51870.2 35.036 137 75 5 1 132 1 128 3.92e-17 75.1
MsaG003010 AT1G72350.1 52.055 73 33 1 2 74 43 113 4.29e-17 76.3
MsaG003010 AT5G51870.5 35.036 137 75 5 1 132 24 151 6.35e-17 75.1
MsaG003010 AT4G09960.6 47.826 69 36 0 1 69 2 70 7.75e-17 75.5
MsaG003010 AT4G09960.1 47.826 69 36 0 1 69 1 69 7.87e-17 75.5
MsaG003010 AT4G09960.2 47.826 69 36 0 1 69 1 69 8.45e-17 75.1
MsaG003010 AT5G51870.1 35.036 137 75 5 1 132 1 128 1.17e-16 74.7
MsaG003010 AT4G24540.1 37.273 110 63 2 1 105 1 109 1.18e-16 74.7
MsaG003010 AT4G09960.5 47.826 69 36 0 1 69 11 79 1.19e-16 75.1
MsaG003010 AT2G22630.1 33.813 139 63 4 1 139 1 110 1.40e-16 74.7
MsaG003010 AT2G22630.2 33.813 139 63 4 1 139 1 110 1.40e-16 74.7
MsaG003010 AT4G09960.3 47.826 69 36 0 1 69 27 95 1.85e-16 75.1
MsaG003010 AT5G51870.4 35.036 137 75 5 1 132 1 128 1.98e-16 74.3
MsaG003010 AT4G09960.4 47.826 69 36 0 1 69 96 164 2.02e-16 75.9
MsaG003010 AT4G22950.3 47.826 69 36 0 1 69 1 69 2.19e-16 74.3
MsaG003010 AT4G22950.1 47.826 69 36 0 1 69 1 69 2.19e-16 74.3
MsaG003010 AT5G51870.3 35.036 137 75 5 1 132 11 138 2.58e-16 74.3
MsaG003010 AT1G29962.1 44.444 72 40 0 2 73 8 79 3.02e-16 73.2
MsaG003010 AT5G65070.4 38.298 94 47 2 1 83 1 94 3.35e-16 72.0
MsaG003010 AT5G10140.2 52.632 57 27 0 1 57 1 57 4.11e-16 72.4
MsaG003010 AT5G10140.3 51.724 58 28 0 1 58 1 58 7.19e-16 72.0
MsaG003010 AT5G10140.4 52.632 57 27 0 1 57 1 57 7.31e-16 72.0
MsaG003010 AT2G14210.1 55.172 58 26 0 1 58 1 58 8.05e-16 72.8
MsaG003010 AT5G10140.1 52.632 57 27 0 1 57 1 57 8.48e-16 72.0
MsaG003010 AT2G14210.2 55.172 58 26 0 1 58 1 58 8.96e-16 72.8
MsaG003010 AT5G65070.1 50.000 58 29 0 1 58 1 58 1.09e-15 72.0
MsaG003010 AT5G20240.2 39.048 105 56 3 1 97 1 105 1.11e-15 70.9
MsaG003010 AT1G71692.1 60.000 50 20 0 1 50 1 50 1.20e-15 72.0
MsaG003010 AT2G42830.2 47.826 69 36 0 1 69 16 84 1.43e-15 72.4
MsaG003010 AT2G42830.1 47.826 69 36 0 1 69 16 84 1.51e-15 72.4
MsaG003010 AT4G11880.2 53.448 58 27 0 1 58 1 58 1.58e-15 70.9
MsaG003010 AT4G11880.3 53.448 58 27 0 1 58 1 58 1.58e-15 70.9
MsaG003010 AT5G51860.2 46.377 69 37 0 1 69 1 69 1.69e-15 71.6
MsaG003010 AT5G65070.3 45.070 71 37 1 1 69 1 71 1.76e-15 72.0
MsaG003010 AT5G51860.1 46.377 69 37 0 1 69 1 69 2.14e-15 71.2
MsaG003010 AT3G58780.1 47.826 69 36 0 1 69 16 84 2.15e-15 72.0
MsaG003010 AT2G22540.3 52.632 57 27 0 1 57 1 57 2.28e-15 71.6
MsaG003010 AT2G22540.1 52.632 57 27 0 1 57 1 57 2.28e-15 71.6
MsaG003010 AT3G58780.5 47.826 69 36 0 1 69 22 90 2.55e-15 72.0
MsaG003010 AT3G58780.2 43.023 86 36 1 1 73 16 101 2.84e-15 71.6
MsaG003010 AT5G65070.2 50.000 58 29 0 1 58 1 58 3.16e-15 71.2
MsaG003010 AT3G30260.1 52.632 57 27 0 1 57 1 57 3.64e-15 71.2
MsaG003010 AT5G20240.1 42.857 77 42 1 1 75 1 77 3.71e-15 70.5
MsaG003010 AT3G58780.4 47.826 69 36 0 1 69 16 84 3.89e-15 71.6
MsaG003010 AT5G65070.5 50.000 58 29 0 1 58 1 58 3.91e-15 70.5
MsaG003010 AT3G54340.1 38.636 88 39 1 1 73 1 88 4.27e-15 70.9
MsaG003010 AT4G11880.4 53.448 58 27 0 1 58 1 58 4.61e-15 70.5
MsaG003010 AT4G11880.1 53.448 58 27 0 1 58 1 58 4.61e-15 70.5
MsaG003010 AT1G69540.1 46.053 76 40 1 1 75 1 76 5.65e-15 72.0
MsaG003010 AT1G69540.2 46.053 76 40 1 1 75 1 76 6.10e-15 72.0
MsaG003010 AT4G18960.1 48.529 68 35 0 2 69 18 85 6.76e-15 70.9
MsaG003010 AT1G46408.1 46.053 76 35 2 1 70 1 76 9.44e-15 70.5
MsaG003010 AT2G22540.2 58.000 50 21 0 1 50 1 50 1.00e-14 70.1
MsaG003010 AT1G77980.1 46.575 73 38 1 1 72 1 73 1.01e-14 71.2
MsaG003010 AT1G69120.2 59.184 49 20 0 1 49 1 49 1.07e-14 69.7
MsaG003010 AT3G58780.3 47.692 65 34 0 1 65 16 80 1.36e-14 70.1
MsaG003010 AT2G03710.3 50.877 57 28 0 1 57 1 57 1.56e-14 68.6
MsaG003010 AT5G60910.1 49.123 57 29 0 1 57 1 57 1.69e-14 69.3
MsaG003010 AT1G69120.1 59.184 49 20 0 1 49 1 49 2.12e-14 69.3
MsaG003010 AT1G22130.1 45.205 73 39 1 1 72 1 73 2.50e-14 70.1
MsaG003010 AT1G18750.4 41.558 77 43 1 1 75 1 77 2.65e-14 70.1
MsaG003010 AT1G18750.3 41.558 77 43 1 1 75 1 77 2.71e-14 70.1
MsaG003010 AT1G18750.1 41.558 77 43 1 1 75 1 77 2.74e-14 70.1
MsaG003010 AT1G26310.1 57.143 49 21 0 1 49 1 49 2.82e-14 68.9
MsaG003010 AT5G62165.17 40.580 69 41 0 1 69 1 69 3.04e-14 67.0
MsaG003010 AT5G62165.12 40.580 69 41 0 1 69 1 69 3.04e-14 67.0
MsaG003010 AT5G62165.11 40.580 69 41 0 1 69 1 69 3.04e-14 67.0
MsaG003010 AT5G15800.1 50.877 57 28 0 1 57 1 57 3.69e-14 68.6
MsaG003010 AT5G65060.3 50.909 55 27 0 1 55 1 55 3.84e-14 67.8
MsaG003010 AT3G02310.2 32.022 178 89 7 1 160 1 164 4.03e-14 67.8
MsaG003010 AT5G65050.2 49.091 55 28 0 1 55 1 55 4.52e-14 67.0
MsaG003010 AT5G65080.2 47.826 69 35 1 1 68 8 76 4.72e-14 67.8
MsaG003010 AT5G15800.2 50.877 57 28 0 1 57 1 57 5.26e-14 68.6
MsaG003010 AT5G62165.6 40.580 69 41 0 1 69 1 69 5.70e-14 66.2
MsaG003010 AT5G62165.9 40.580 69 41 0 1 69 1 69 5.70e-14 66.2
MsaG003010 AT5G62165.7 40.580 69 41 0 1 69 1 69 5.70e-14 66.2
MsaG003010 AT5G62165.8 40.580 69 41 0 1 69 1 69 5.70e-14 66.2
MsaG003010 AT5G62165.13 40.580 69 41 0 1 69 1 69 5.70e-14 66.2
MsaG003010 AT2G03710.2 50.877 57 28 0 1 57 1 57 6.35e-14 68.2
MsaG003010 AT2G03710.1 50.877 57 28 0 1 57 1 57 6.55e-14 68.2
MsaG003010 AT1G24260.3 50.877 57 28 0 1 57 1 57 6.81e-14 67.8
MsaG003010 AT5G65060.1 50.909 55 27 0 1 55 1 55 6.95e-14 67.0
MsaG003010 AT5G65060.2 50.909 55 27 0 1 55 1 55 7.01e-14 66.6
MsaG003010 AT1G28450.1 28.235 170 94 3 2 148 8 172 7.23e-14 66.6
MsaG003010 AT1G24260.2 50.877 57 28 0 1 57 1 57 7.28e-14 67.8
MsaG003010 AT5G23260.3 59.184 49 20 0 1 49 1 49 7.64e-14 67.8
MsaG003010 AT1G24260.1 50.877 57 28 0 1 57 1 57 7.65e-14 67.8
MsaG003010 AT5G23260.2 59.184 49 20 0 1 49 1 49 7.74e-14 67.8
MsaG003010 AT3G02310.1 50.877 57 28 0 1 57 1 57 7.88e-14 67.8
MsaG003010 AT5G62165.3 40.580 69 41 0 1 69 1 69 8.67e-14 67.0
MsaG003010 AT5G62165.1 40.580 69 41 0 1 69 1 69 8.67e-14 67.0
MsaG003010 AT5G62165.2 40.580 69 41 0 1 69 1 69 8.67e-14 67.0
MsaG003010 AT5G23260.4 59.184 49 20 0 1 49 17 65 9.34e-14 67.8
MsaG003010 AT5G23260.1 59.184 49 20 0 1 49 17 65 9.44e-14 67.8
MsaG003010 AT5G62165.10 40.580 69 41 0 1 69 1 69 9.47e-14 66.6
MsaG003010 AT5G62165.4 40.580 69 41 0 1 69 1 69 9.47e-14 66.6
MsaG003010 AT5G62165.14 40.580 69 41 0 1 69 1 69 9.60e-14 64.7
MsaG003010 AT1G17310.1 55.172 58 24 1 17 74 63 118 1.13e-13 67.0
MsaG003010 AT5G65080.3 49.091 55 28 0 1 55 8 62 1.24e-13 66.2
MsaG003010 AT5G65050.3 49.091 55 28 0 1 55 1 55 1.54e-13 66.2
MsaG003010 AT5G65050.1 49.091 55 28 0 1 55 1 55 1.57e-13 65.9
MsaG003010 AT5G65050.5 49.091 55 28 0 1 55 1 55 1.62e-13 65.9
MsaG003010 AT1G17310.2 55.172 58 24 1 17 74 74 129 1.67e-13 66.6
MsaG003010 AT1G77950.3 43.836 73 40 1 1 72 1 73 3.22e-13 66.2
MsaG003010 AT1G77950.2 43.836 73 40 1 1 72 1 73 3.22e-13 66.2
MsaG003010 AT1G77950.1 43.836 73 40 1 1 72 1 73 3.22e-13 66.2
MsaG003010 AT1G77950.4 43.836 73 40 1 1 72 1 73 3.22e-13 66.2
MsaG003010 AT2G03060.2 44.156 77 41 2 1 75 1 77 5.57e-13 66.2
MsaG003010 AT2G03060.3 44.156 77 41 2 1 75 1 77 6.07e-13 66.2
MsaG003010 AT2G03060.7 44.156 77 41 2 1 75 1 77 6.07e-13 66.2
MsaG003010 AT2G03060.1 44.156 77 41 2 1 75 1 77 6.07e-13 66.2
MsaG003010 AT1G60920.1 38.614 101 52 5 1 92 1 100 1.25e-12 63.5
MsaG003010 AT4G37435.1 49.123 57 29 0 1 57 1 57 2.48e-12 62.8
MsaG003010 AT2G26320.1 40.625 64 38 0 1 64 17 80 3.43e-12 60.5
MsaG003010 AT1G77080.11 64.103 39 14 0 1 39 1 39 2.49e-11 59.7
MsaG003010 AT1G77080.5 64.103 39 14 0 1 39 1 39 2.74e-11 59.7
MsaG003010 AT1G77080.12 64.103 39 14 0 1 39 1 39 4.50e-11 58.5
MsaG003010 AT1G77080.4 64.103 39 14 0 1 39 1 39 6.40e-11 58.9
MsaG003010 AT1G77080.2 64.103 39 14 0 1 39 1 39 9.20e-11 58.5

Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGAGAATTACTTGGTTT+TGG 0.200763 1:+50449193 None:intergenic
GGGAAGAATCCTTACTCTTT+TGG 0.254624 1:-50449262 MsaT003010.1:CDS
GACTTCTGCTCCGCACAAAA+TGG 0.372405 1:+50449306 None:intergenic
TAGATTCAAATCTTCCATCT+TGG 0.375242 1:+50449150 None:intergenic
AGATTCAAATCTTCCATCTT+GGG 0.393307 1:+50449151 None:intergenic
GCTATTGTTGTGTTCTCTCC+AGG 0.420934 1:-50449283 MsaT003010.1:CDS
ACATTCTCAAAGCGTCGAAC+CGG 0.426827 1:-50449355 MsaT003010.1:CDS
AATGTGATTTGCCTTGTGTT+GGG 0.427234 1:+50449373 None:intergenic
GAATGTGATTTGCCTTGTGT+TGG 0.464658 1:+50449372 None:intergenic
CGGTTTCCTAGAGAATTACT+TGG 0.465336 1:+50449187 None:intergenic
GTAGCAACAAAATCAACTCC+TGG 0.505710 1:+50449235 None:intergenic
CACTTCTGAAGCTCCCAAGA+TGG 0.519111 1:-50449164 MsaT003010.1:CDS
CCTGGGTGACCAAAAGAGTA+AGG 0.526567 1:+50449253 None:intergenic
ATGTGATTTGCCTTGTGTTG+GGG 0.537629 1:+50449374 None:intergenic
CCAAAACCAAGTAATTCTCT+AGG 0.541444 1:-50449193 MsaT003010.1:CDS
AATCCGTGATGGTGAAAAGC+AGG 0.547888 1:-50449104 MsaT003010.1:CDS
CTATTGTTGTGTTCTCTCCA+GGG 0.560098 1:-50449282 MsaT003010.1:CDS
AAAGAGTAAGGATTCTTCCC+TGG 0.575742 1:+50449265 None:intergenic
GTCGCAAAATTAAGATAGAG+AGG 0.594203 1:-50449405 MsaT003010.1:CDS
TAGCAACAAAATCAACTCCT+GGG 0.598778 1:+50449236 None:intergenic
TCTTGGGAGCTTCAGAAGTG+CGG 0.606345 1:+50449167 None:intergenic
GGGTGAAAGACCCCAACACA+AGG 0.612469 1:-50449384 MsaT003010.1:CDS
CTAGCTAAAGATCCAGTGGT+GGG 0.639080 1:-50448938 MsaT003010.1:CDS
GCTTCTAGCTAAAGATCCAG+TGG 0.643039 1:-50448942 MsaT003010.1:CDS
TCTAGCTAAAGATCCAGTGG+TGG 0.650776 1:-50448939 MsaT003010.1:CDS
TCGCAAAATTAAGATAGAGA+GGG 0.676979 1:-50449404 MsaT003010.1:CDS
GTGTTAGCACAAATCCGTGA+TGG 0.688259 1:-50449115 MsaT003010.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 50448895 50449434 50448895 ID=MsaG003010
Chr1 mRNA 50448895 50449434 50448895 ID=MsaT003010.1;Parent=MsaG003010
Chr1 exon 50448895 50449434 50448895 ID=MsaT003010.1.exon1;Parent=MsaT003010.1
Chr1 CDS 50448895 50449434 50448895 ID=cds.MsaT003010.1;Parent=MsaT003010.1
Gene Sequence

>MsaT003010.1

ATGGGTCGTCGCAAAATTAAGATAGAGAGGGTGAAAGACCCCAACACAAGGCAAATCACATTCTCAAAGCGTCGAACCGGTTTATTCAAAAAAGCAAATGAATTATCCATTTTGTGCGGAGCAGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAAGAATCCTTACTCTTTTGGTCACCCAGGAGTTGATTTTGTTGCTACGAAGTATCTTCAACTAGAGCCAAAACCAAGTAATTCTCTAGGAAACCGCACTTCTGAAGCTCCCAAGATGGAAGATTTGAATCTAGAACTTGCTGATGTGTTAGCACAAATCCGTGATGGTGAAAAGCAGGCTGCGACTCATGATGAGATTCTGAAGCAAAACGATGTGACAAAACTCTCTGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCAGCTCAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTAAAGATCCAGTGGTGGGAATAAAAGCGAAATCGTCAAAAAATAAAAGAAGAAAAAATTGA
Protein sequence

>MsaT003010.1

MGRRKIKIERVKDPNTRQITFSKRRTGLFKKANELSILCGAEVAIVVFSPGKNPYSFGHPGVDFVATKYLQLEPKPSNSLGNRTSEAPKMEDLNLELADVLAQIRDGEKQAATHDEILKQNDVTKLSELKELRDSYKELQDCIKLQLSDIEISECLMLLAKDPVVGIKAKSSKNKRRKN*