Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003061 | XP_024634319.1 | 97.405 | 501 | 8 | 3 | 1 | 497 | 1 | 500 | 0.0 | 997 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003061 | sp|Q700D2|IDD10_ARATH | 50.485 | 515 | 213 | 10 | 1 | 488 | 1 | 500 | 1.45e-140 | 417 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003061 | tr|A0A396JNC6|A0A396JNC6_MEDTR | 97.405 | 501 | 8 | 3 | 1 | 497 | 1 | 500 | 0.0 | 997 |
Gene ID | Type | Classification |
---|---|---|
MsaG003061 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003061 | MtrunA17_Chr1g0181381 | 97.405 | 501 | 8 | 3 | 1 | 497 | 1 | 500 | 0.0 | 997 |
MsaG003061 | MtrunA17_Chr7g0263941 | 57.582 | 488 | 102 | 14 | 4 | 489 | 3 | 387 | 9.60e-166 | 474 |
MsaG003061 | MtrunA17_Chr4g0029521 | 47.082 | 514 | 204 | 17 | 3 | 487 | 1 | 475 | 4.41e-129 | 384 |
MsaG003061 | MtrunA17_Chr4g0040571 | 45.833 | 480 | 190 | 12 | 32 | 468 | 33 | 485 | 2.43e-119 | 359 |
MsaG003061 | MtrunA17_Chr2g0330171 | 47.427 | 447 | 158 | 11 | 38 | 468 | 46 | 431 | 3.59e-116 | 350 |
MsaG003061 | MtrunA17_Chr1g0185121 | 83.516 | 182 | 26 | 1 | 34 | 211 | 36 | 217 | 1.38e-114 | 345 |
MsaG003061 | MtrunA17_Chr8g0342421 | 88.623 | 167 | 18 | 1 | 38 | 204 | 62 | 227 | 6.01e-112 | 341 |
MsaG003061 | MtrunA17_Chr2g0326381 | 58.333 | 288 | 106 | 5 | 38 | 325 | 32 | 305 | 7.90e-112 | 337 |
MsaG003061 | MtrunA17_Chr8g0373541 | 84.091 | 176 | 22 | 2 | 26 | 201 | 26 | 195 | 5.74e-111 | 338 |
MsaG003061 | MtrunA17_Chr1g0163001 | 71.818 | 220 | 56 | 4 | 34 | 248 | 38 | 256 | 1.00e-109 | 335 |
MsaG003061 | MtrunA17_Chr1g0199101 | 87.952 | 166 | 18 | 2 | 36 | 200 | 44 | 208 | 1.66e-109 | 335 |
MsaG003061 | MtrunA17_Chr7g0268961 | 50.681 | 367 | 118 | 8 | 48 | 403 | 32 | 346 | 1.62e-108 | 331 |
MsaG003061 | MtrunA17_Chr1g0162971 | 55.202 | 346 | 119 | 11 | 38 | 368 | 41 | 365 | 1.62e-108 | 330 |
MsaG003061 | MtrunA17_Chr1g0151351 | 52.695 | 334 | 76 | 7 | 38 | 369 | 41 | 294 | 3.73e-108 | 329 |
MsaG003061 | MtrunA17_Chr1g0210821 | 83.333 | 168 | 27 | 1 | 41 | 208 | 47 | 213 | 2.09e-106 | 328 |
MsaG003061 | MtrunA17_Chr1g0191991 | 80.925 | 173 | 32 | 1 | 38 | 210 | 63 | 234 | 2.64e-105 | 324 |
MsaG003061 | MtrunA17_Chr3g0141431 | 74.857 | 175 | 44 | 0 | 21 | 195 | 5 | 179 | 1.06e-101 | 311 |
MsaG003061 | MtrunA17_Chr2g0324991 | 86.364 | 132 | 17 | 1 | 49 | 180 | 3 | 133 | 2.37e-84 | 257 |
MsaG003061 | MtrunA17_Chr6g0479921 | 64.968 | 157 | 53 | 2 | 38 | 193 | 29 | 184 | 1.09e-74 | 243 |
MsaG003061 | MtrunA17_Chr8g0375521 | 64.103 | 156 | 55 | 1 | 38 | 192 | 27 | 182 | 1.90e-74 | 241 |
MsaG003061 | MtrunA17_Chr1g0200421 | 31.489 | 235 | 128 | 9 | 52 | 258 | 236 | 465 | 6.58e-26 | 110 |
MsaG003061 | MtrunA17_Chr3g0123941 | 36.538 | 156 | 92 | 4 | 43 | 191 | 113 | 268 | 1.96e-24 | 103 |
MsaG003061 | MtrunA17_Chr2g0320341 | 34.839 | 155 | 88 | 4 | 47 | 188 | 224 | 378 | 2.21e-24 | 105 |
MsaG003061 | MtrunA17_Chr5g0422571 | 32.000 | 200 | 118 | 5 | 10 | 200 | 65 | 255 | 1.14e-22 | 98.2 |
MsaG003061 | MtrunA17_Chr7g0258011 | 32.558 | 172 | 99 | 5 | 54 | 209 | 176 | 346 | 8.57e-21 | 93.6 |
MsaG003061 | MtrunA17_Chr8g0382121 | 33.987 | 153 | 91 | 4 | 46 | 188 | 104 | 256 | 1.36e-20 | 92.4 |
MsaG003061 | MtrunA17_Chr4g0053341 | 33.113 | 151 | 92 | 4 | 49 | 191 | 69 | 218 | 2.25e-20 | 90.1 |
MsaG003061 | MtrunA17_Chr1g0198651 | 34.028 | 144 | 83 | 4 | 59 | 191 | 107 | 249 | 5.53e-20 | 90.5 |
MsaG003061 | MtrunA17_Chr4g0026521 | 34.932 | 146 | 86 | 4 | 54 | 191 | 118 | 262 | 2.22e-19 | 88.6 |
MsaG003061 | MtrunA17_Chr8g0352011 | 33.333 | 156 | 87 | 5 | 59 | 198 | 171 | 325 | 7.67e-19 | 87.8 |
MsaG003061 | MtrunA17_Chr1g0173841 | 31.737 | 167 | 97 | 5 | 59 | 209 | 220 | 385 | 7.90e-19 | 88.6 |
MsaG003061 | MtrunA17_Chr2g0328921 | 33.562 | 146 | 88 | 4 | 54 | 191 | 138 | 282 | 1.41e-18 | 86.7 |
MsaG003061 | MtrunA17_Chr2g0321291 | 34.247 | 146 | 87 | 4 | 54 | 191 | 133 | 277 | 4.04e-18 | 85.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003061 | AT5G03150.1 | 50.485 | 515 | 213 | 10 | 1 | 488 | 1 | 500 | 1.47e-141 | 417 |
MsaG003061 | AT5G66730.1 | 53.061 | 392 | 127 | 10 | 19 | 374 | 19 | 389 | 4.79e-115 | 348 |
MsaG003061 | AT3G50700.1 | 86.364 | 176 | 21 | 2 | 26 | 201 | 24 | 196 | 6.55e-114 | 344 |
MsaG003061 | AT3G45260.2 | 53.175 | 378 | 123 | 9 | 38 | 393 | 39 | 384 | 1.53e-113 | 343 |
MsaG003061 | AT3G45260.1 | 53.175 | 378 | 123 | 9 | 38 | 393 | 39 | 384 | 1.53e-113 | 343 |
MsaG003061 | AT5G44160.1 | 50.811 | 370 | 153 | 9 | 34 | 398 | 33 | 378 | 5.95e-113 | 342 |
MsaG003061 | AT5G60470.3 | 73.077 | 208 | 49 | 2 | 3 | 205 | 2 | 207 | 1.14e-111 | 338 |
MsaG003061 | AT5G60470.2 | 73.077 | 208 | 49 | 2 | 3 | 205 | 6 | 211 | 1.33e-111 | 338 |
MsaG003061 | AT4G02670.1 | 83.908 | 174 | 28 | 0 | 37 | 210 | 52 | 225 | 3.41e-111 | 335 |
MsaG003061 | AT4G02670.2 | 83.908 | 174 | 28 | 0 | 37 | 210 | 54 | 227 | 4.19e-111 | 335 |
MsaG003061 | AT1G55110.3 | 88.485 | 165 | 19 | 0 | 38 | 202 | 63 | 227 | 4.85e-111 | 337 |
MsaG003061 | AT1G55110.1 | 88.485 | 165 | 19 | 0 | 38 | 202 | 63 | 227 | 4.85e-111 | 337 |
MsaG003061 | AT1G55110.2 | 88.485 | 165 | 19 | 0 | 38 | 202 | 63 | 227 | 4.85e-111 | 337 |
MsaG003061 | AT1G03840.1 | 50.526 | 380 | 116 | 10 | 34 | 368 | 37 | 389 | 1.80e-110 | 337 |
MsaG003061 | AT2G02080.1 | 50.689 | 363 | 146 | 9 | 29 | 372 | 46 | 394 | 1.82e-109 | 335 |
MsaG003061 | AT2G02080.4 | 50.689 | 363 | 146 | 9 | 29 | 372 | 46 | 394 | 1.82e-109 | 335 |
MsaG003061 | AT2G02080.5 | 50.689 | 363 | 146 | 9 | 29 | 372 | 46 | 394 | 1.82e-109 | 335 |
MsaG003061 | AT2G02080.3 | 50.689 | 363 | 146 | 9 | 29 | 372 | 46 | 394 | 1.82e-109 | 335 |
MsaG003061 | AT3G13810.6 | 85.119 | 168 | 25 | 0 | 38 | 205 | 51 | 218 | 3.92e-109 | 333 |
MsaG003061 | AT3G13810.5 | 85.119 | 168 | 25 | 0 | 38 | 205 | 65 | 232 | 5.05e-109 | 333 |
MsaG003061 | AT3G13810.4 | 85.119 | 168 | 25 | 0 | 38 | 205 | 70 | 237 | 5.98e-109 | 333 |
MsaG003061 | AT3G13810.1 | 85.119 | 168 | 25 | 0 | 38 | 205 | 70 | 237 | 5.98e-109 | 333 |
MsaG003061 | AT1G03840.2 | 50.000 | 380 | 116 | 11 | 34 | 368 | 37 | 387 | 7.23e-107 | 328 |
MsaG003061 | AT1G14580.1 | 78.736 | 174 | 36 | 1 | 37 | 210 | 52 | 224 | 1.92e-106 | 325 |
MsaG003061 | AT1G14580.2 | 78.736 | 174 | 36 | 1 | 37 | 210 | 52 | 224 | 1.92e-106 | 325 |
MsaG003061 | AT1G14580.3 | 78.736 | 174 | 36 | 1 | 37 | 210 | 66 | 238 | 2.86e-106 | 325 |
MsaG003061 | AT5G44160.2 | 50.000 | 356 | 149 | 9 | 48 | 398 | 8 | 339 | 7.53e-105 | 320 |
MsaG003061 | AT2G02070.2 | 83.626 | 171 | 26 | 2 | 38 | 207 | 52 | 221 | 8.94e-105 | 325 |
MsaG003061 | AT2G02070.1 | 83.626 | 171 | 26 | 2 | 38 | 207 | 52 | 221 | 8.94e-105 | 325 |
MsaG003061 | AT3G13810.3 | 85.987 | 157 | 22 | 0 | 49 | 205 | 68 | 224 | 3.67e-102 | 315 |
MsaG003061 | AT3G13810.2 | 85.987 | 157 | 22 | 0 | 49 | 205 | 82 | 238 | 4.53e-102 | 316 |
MsaG003061 | AT5G60470.1 | 82.166 | 157 | 28 | 0 | 49 | 205 | 46 | 202 | 4.83e-99 | 306 |
MsaG003061 | AT2G02080.6 | 48.788 | 330 | 137 | 8 | 62 | 372 | 1 | 317 | 2.43e-92 | 288 |
MsaG003061 | AT2G02080.2 | 48.788 | 330 | 137 | 8 | 62 | 372 | 1 | 317 | 2.43e-92 | 288 |
MsaG003061 | AT2G01940.1 | 65.217 | 161 | 55 | 1 | 35 | 194 | 41 | 201 | 3.15e-76 | 246 |
MsaG003061 | AT1G25250.3 | 63.580 | 162 | 57 | 2 | 33 | 192 | 28 | 189 | 2.29e-75 | 242 |
MsaG003061 | AT1G68130.1 | 63.462 | 156 | 56 | 1 | 38 | 192 | 41 | 196 | 2.56e-74 | 241 |
MsaG003061 | AT2G01940.3 | 64.198 | 162 | 56 | 2 | 35 | 194 | 41 | 202 | 1.46e-72 | 237 |
MsaG003061 | AT1G25250.1 | 65.306 | 147 | 49 | 2 | 48 | 192 | 20 | 166 | 8.12e-71 | 230 |
MsaG003061 | AT2G01940.2 | 63.393 | 112 | 40 | 1 | 84 | 194 | 1 | 112 | 7.15e-47 | 167 |
MsaG003061 | AT1G25250.2 | 63.063 | 111 | 39 | 2 | 84 | 192 | 1 | 111 | 4.64e-46 | 163 |
MsaG003061 | AT1G68130.2 | 61.818 | 110 | 41 | 1 | 84 | 192 | 1 | 110 | 5.32e-46 | 164 |
MsaG003061 | AT5G22890.1 | 32.673 | 202 | 118 | 7 | 5 | 188 | 150 | 351 | 1.74e-24 | 105 |
MsaG003061 | AT1G34370.3 | 34.810 | 158 | 90 | 4 | 47 | 191 | 14 | 171 | 1.18e-23 | 101 |
MsaG003061 | AT1G34370.2 | 34.810 | 158 | 90 | 4 | 47 | 191 | 224 | 381 | 2.75e-23 | 103 |
MsaG003061 | AT1G34370.1 | 34.810 | 158 | 90 | 4 | 47 | 191 | 224 | 381 | 2.75e-23 | 103 |
MsaG003061 | AT1G13290.1 | 35.849 | 159 | 89 | 7 | 59 | 205 | 93 | 250 | 1.96e-21 | 95.1 |
MsaG003061 | AT3G20880.1 | 34.247 | 146 | 87 | 4 | 54 | 191 | 243 | 387 | 4.37e-19 | 89.7 |
MsaG003061 | AT1G34790.1 | 32.948 | 173 | 100 | 5 | 51 | 208 | 129 | 300 | 5.48e-19 | 88.2 |
MsaG003061 | AT3G57670.1 | 31.548 | 168 | 98 | 5 | 54 | 205 | 204 | 370 | 2.03e-18 | 87.4 |
MsaG003061 | AT1G51220.1 | 32.877 | 146 | 89 | 4 | 54 | 191 | 165 | 309 | 2.15e-18 | 86.7 |
MsaG003061 | AT1G08290.1 | 37.037 | 135 | 75 | 4 | 66 | 191 | 179 | 312 | 3.53e-18 | 86.3 |
Find 92 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGAAGATTTCTCTTCTTCT+TGG | 0.211257 | 1:-51135663 | None:intergenic |
CACCATGGTGGTTCTGGTTC+TGG | 0.254794 | 1:+51137215 | MsaT003061.1:CDS |
GGAATTCCACATCCACAATT+TGG | 0.260215 | 1:+51136606 | MsaT003061.1:CDS |
CAGAAGGAGCATTAGGTTTA+GGG | 0.264157 | 1:-51135637 | None:intergenic |
AGTGAAGTGGATAGTGAAAA+AGG | 0.270126 | 1:-51135575 | None:intergenic |
CAAGTAGATTTCAATGGAAT+TGG | 0.274341 | 1:+51136645 | MsaT003061.1:CDS |
GGAAGATTTCTCTTCTTCTT+GGG | 0.283013 | 1:-51135662 | None:intergenic |
ACAGAAGGAGCATTAGGTTT+AGG | 0.289450 | 1:-51135638 | None:intergenic |
AAACAACAACTCTATGATTA+TGG | 0.293503 | 1:+51136668 | MsaT003061.1:CDS |
GGAGCATTAGGTTTAGGGTT+AGG | 0.301624 | 1:-51135632 | None:intergenic |
TTTGTTGCCATGAGTGTCTT+TGG | 0.309658 | 1:-51135824 | None:intergenic |
ATTATGCACCATGGTGGTTC+TGG | 0.314183 | 1:+51137209 | MsaT003061.1:CDS |
ATAAACCAGAAGAACCAAAA+AGG | 0.329036 | 1:-51136761 | None:intergenic |
TGGTTCTGGTTCAAACTCTA+TGG | 0.329623 | 1:+51137229 | MsaT003061.1:CDS |
CTATCAAAGCCTGCTTCTTC+CGG | 0.333625 | 1:+51136903 | MsaT003061.1:CDS |
GACCTCTTCTATGTAGTTGA+AGG | 0.344711 | 1:-51135895 | None:intergenic |
GAGCATTAGGTTTAGGGTTA+GGG | 0.346709 | 1:-51135631 | None:intergenic |
TTTCTTAATAACATCTTTGT+TGG | 0.351397 | 1:-51135948 | None:intergenic |
CATGGAATACTTCAAAATAT+TGG | 0.352848 | 1:+51136582 | MsaT003061.1:CDS |
TCCAATATGCAAATGATTCC+TGG | 0.354400 | 1:+51135548 | None:intergenic |
TTGGGGACAGAAGGAGCATT+AGG | 0.361121 | 1:-51135644 | None:intergenic |
GTCCCATTTCATGATTCCCT+TGG | 0.362528 | 1:-51136725 | None:intergenic |
TTTCCTTGTTGATCACTTTG+TGG | 0.363250 | 1:-51137179 | None:intergenic |
TCTTCTTCATCATCAATGTT+TGG | 0.374372 | 1:+51136840 | MsaT003061.1:CDS |
ATGAATATACCTGGTGTTCC+TGG | 0.396720 | 1:-51135683 | None:intergenic |
AAACCAAGGGAATCATGAAA+TGG | 0.400103 | 1:+51136722 | MsaT003061.1:CDS |
TTTATCTGAGATAGTTCAAA+TGG | 0.400334 | 1:+51136779 | MsaT003061.1:CDS |
CACTATCCACTTCACTTGGT+GGG | 0.416726 | 1:+51135582 | MsaT003061.1:CDS |
TATGAGCTTTCCAATCAGAT+TGG | 0.425071 | 1:-51136117 | None:intergenic |
CTCTTCTTCTTGGGGACAGA+AGG | 0.425270 | 1:-51135653 | None:intergenic |
TTCTACTAGTTCAGCTATGT+TGG | 0.428171 | 1:+51137079 | MsaT003061.1:CDS |
TCTACTAGTTCAGCTATGTT+GGG | 0.430741 | 1:+51137080 | MsaT003061.1:CDS |
TGGTGGACACAAGTCTTCTC+TGG | 0.431235 | 1:-51135986 | None:intergenic |
AGAGCAATAACCTCGGCATC+TGG | 0.433782 | 1:-51135797 | None:intergenic |
TCACTATCCACTTCACTTGG+TGG | 0.459561 | 1:+51135581 | MsaT003061.1:CDS |
GATCTCTGTCTTAGCTTCCA+TGG | 0.464655 | 1:-51135926 | None:intergenic |
CTGATTACCTGTGAATTGAA+TGG | 0.467069 | 1:-51137360 | None:intergenic |
AATATGCAGTCCAATCTGAT+TGG | 0.470247 | 1:+51136107 | MsaT003061.1:CDS |
AAAGGCCAAGTTTATCACTT+TGG | 0.471302 | 1:+51136697 | MsaT003061.1:CDS |
AAGAAGAAGAGAAATCTTCC+AGG | 0.472027 | 1:+51135665 | MsaT003061.1:CDS |
GAAGATTTCTCTTCTTCTTG+GGG | 0.478434 | 1:-51135661 | None:intergenic |
TTTCTTGGTGTGAGTGGTGG+AGG | 0.481376 | 1:+51137284 | MsaT003061.1:CDS |
GCTTCTTCCATTCAATTCAC+AGG | 0.484056 | 1:+51137353 | MsaT003061.1:CDS |
TATCATCAAGTAGATTTCAA+TGG | 0.492025 | 1:+51136639 | MsaT003061.1:CDS |
TCTGTCTTAGCTTCCATGGA+AGG | 0.492579 | 1:-51135922 | None:intergenic |
GTGAGTGGTGGAGGAAGAAC+TGG | 0.493538 | 1:+51137293 | MsaT003061.1:CDS |
AACCAAGGGAATCATGAAAT+GGG | 0.497808 | 1:+51136723 | MsaT003061.1:CDS |
TCTGTGAAATATGCAACAAA+GGG | 0.500256 | 1:+51135855 | MsaT003061.1:CDS |
CATCCACAATTTGGTTCACA+TGG | 0.504169 | 1:+51136615 | MsaT003061.1:CDS |
AATATTATACCTTGAGAAGA+GGG | 0.509866 | 1:-51136182 | None:intergenic |
ATCTGTGAAATATGCAACAA+AGG | 0.510966 | 1:+51135854 | MsaT003061.1:CDS |
AGCAGAAACAGTAACAGAAC+CGG | 0.511338 | 1:-51136922 | None:intergenic |
GAAGAGGTCACAACCTTCCA+TGG | 0.514490 | 1:+51135909 | MsaT003061.1:CDS |
TTTAACCAAAGTGATAAACT+TGG | 0.528252 | 1:-51136702 | None:intergenic |
AGATCACCAAGTGCTCTTGA+AGG | 0.529586 | 1:-51136013 | None:intergenic |
GCAGATGTTGAATTTGAAGC+AGG | 0.534808 | 1:-51136867 | None:intergenic |
GGAATACTTCAAAATATTGG+TGG | 0.535088 | 1:+51136585 | MsaT003061.1:CDS |
TGATGAAGAAGAACAAATCA+AGG | 0.539973 | 1:-51136829 | None:intergenic |
CATGACCCTTCAAGAGCACT+TGG | 0.544018 | 1:+51136007 | MsaT003061.1:CDS |
ATGTTGGGAAATAGTAGTGC+AGG | 0.545999 | 1:+51137095 | MsaT003061.1:CDS |
TGTGAACCAAATTGTGGATG+TGG | 0.555768 | 1:-51136612 | None:intergenic |
ACTAAACCCACCAAGTGAAG+TGG | 0.557454 | 1:-51135588 | None:intergenic |
TATCACTTTGGTTAAACCAA+GGG | 0.558927 | 1:+51136709 | MsaT003061.1:CDS |
AGAAATCTTCCAGGAACACC+AGG | 0.564051 | 1:+51135674 | MsaT003061.1:CDS |
CAAGTGCTCTTGAAGGGTCA+TGG | 0.570425 | 1:-51136006 | None:intergenic |
GAAAGCACGGTGAAAAGAAG+TGG | 0.572977 | 1:+51136062 | MsaT003061.1:CDS |
GTAACAGAACCGGAAGAAGC+AGG | 0.576220 | 1:-51136912 | None:intergenic |
AAATATTATACCTTGAGAAG+AGG | 0.578176 | 1:-51136183 | None:intergenic |
AACCTTCAACTACATAGAAG+AGG | 0.579451 | 1:+51135893 | MsaT003061.1:CDS |
GCTGAACTAGTAGAAGAAGA+AGG | 0.581667 | 1:-51137071 | None:intergenic |
TTATCTGAGATAGTTCAAAT+GGG | 0.582881 | 1:+51136780 | MsaT003061.1:CDS |
ACTGTGGCACCCTCTTCTCA+AGG | 0.585281 | 1:+51136173 | MsaT003061.1:CDS |
GATCACCAAGTGCTCTTGAA+GGG | 0.591900 | 1:-51136012 | None:intergenic |
AGAGCACTTGGTGATCTCAC+AGG | 0.592028 | 1:+51136019 | MsaT003061.1:CDS |
TCACAACATGGTTTATCACA+TGG | 0.594739 | 1:+51136564 | MsaT003061.1:CDS |
CTATGATTATGGAGCAACAA+AGG | 0.599161 | 1:+51136679 | MsaT003061.1:CDS |
TTATCACTTTGGTTAAACCA+AGG | 0.601736 | 1:+51136708 | MsaT003061.1:CDS |
GATAAACCATGTTGTGAATG+TGG | 0.612705 | 1:-51136558 | None:intergenic |
TCTTGAGGTAGAAACTGATG+TGG | 0.615192 | 1:-51137317 | None:intergenic |
TATCCATGTGAACCAAATTG+TGG | 0.627461 | 1:-51136618 | None:intergenic |
AAGCACTTTAGTAGAAAGCA+CGG | 0.627488 | 1:+51136049 | MsaT003061.1:CDS |
TTGAATATTATGCACCATGG+TGG | 0.642049 | 1:+51137203 | MsaT003061.1:CDS |
TCTATCACCAAAGACACTCA+TGG | 0.646655 | 1:+51135817 | MsaT003061.1:CDS |
AGAAGAGCAGTAGCTGACAT+TGG | 0.651547 | 1:-51136948 | None:intergenic |
ATGAATCCACATTCACAACA+TGG | 0.651933 | 1:+51136552 | MsaT003061.1:CDS |
CTATACAGATCCAGATGCCG+AGG | 0.652908 | 1:+51135787 | MsaT003061.1:intron |
GTGCTCTTGAAGGGTCATGG+TGG | 0.656702 | 1:-51136003 | None:intergenic |
AGAGAATACAAATGTGACTG+TGG | 0.678918 | 1:+51136157 | MsaT003061.1:CDS |
AACCAGAACCAGAACCACCA+TGG | 0.689052 | 1:-51137217 | None:intergenic |
AAATTGAATATTATGCACCA+TGG | 0.694171 | 1:+51137200 | MsaT003061.1:CDS |
TGGTGATAGAGCAATAACCT+CGG | 0.716517 | 1:-51135804 | None:intergenic |
GGACCACAAAGTGATCAACA+AGG | 0.742344 | 1:+51137176 | MsaT003061.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 51135554 | 51137385 | 51135554 | ID=MsaG003061 |
Chr1 | mRNA | 51135554 | 51137385 | 51135554 | ID=MsaT003061.1;Parent=MsaG003061 |
Chr1 | exon | 51135554 | 51135695 | 51135554 | ID=MsaT003061.1.exon1;Parent=MsaT003061.1 |
Chr1 | CDS | 51135554 | 51135695 | 51135554 | ID=cds.MsaT003061.1;Parent=MsaT003061.1 |
Chr1 | exon | 51135795 | 51136194 | 51135795 | ID=MsaT003061.1.exon2;Parent=MsaT003061.1 |
Chr1 | CDS | 51135795 | 51136194 | 51135795 | ID=cds.MsaT003061.1;Parent=MsaT003061.1 |
Chr1 | exon | 51136434 | 51137385 | 51136434 | ID=MsaT003061.1.exon3;Parent=MsaT003061.1 |
Chr1 | CDS | 51136434 | 51137385 | 51136434 | ID=cds.MsaT003061.1;Parent=MsaT003061.1 |
Gene Sequence |
Protein sequence |