Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003075 | XP_039685680.1 | 86.092 | 568 | 69 | 3 | 1 | 558 | 1 | 568 | 0.0 | 1014 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003075 | sp|Q9SZL8|FRS5_ARATH | 26.371 | 474 | 300 | 11 | 52 | 505 | 74 | 518 | 9.66e-47 | 178 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003075 | tr|D3YBB9|D3YBB9_TRIRP | 74.955 | 551 | 128 | 3 | 18 | 558 | 50 | 600 | 0.0 | 854 |
Gene ID | Type | Classification |
---|---|---|
MsaG003075 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000457 | MsaG003075 | 0.825454 | 8.253878e-54 | 2.102317e-51 |
MsaG001754 | MsaG003075 | 0.805141 | 2.604159e-49 | 3.961001e-47 |
MsaG003330 | MsaG003075 | 0.803685 | 5.217605e-49 | 7.672736e-47 |
MsaG005404 | MsaG003075 | 0.800807 | 2.027976e-48 | 2.792406e-46 |
MsaG006203 | MsaG003075 | 0.877906 | 9.029874e-69 | 1.479596e-65 |
MsaG007848 | MsaG003075 | 0.849102 | 7.611066e-60 | 4.000867e-57 |
MsaG007852 | MsaG003075 | 0.841719 | 7.436430e-58 | 3.064738e-55 |
MsaG010102 | MsaG003075 | 0.818906 | 2.680054e-52 | 5.727002e-50 |
MsaG010547 | MsaG003075 | 0.828540 | 1.520773e-54 | 4.222355e-52 |
MsaG012335 | MsaG003075 | 0.820447 | 1.196785e-52 | 2.663577e-50 |
MsaG045720 | MsaG003075 | 0.850319 | 3.491938e-60 | 1.913147e-57 |
MsaG002762 | MsaG003075 | 0.869387 | 6.526478e-66 | 7.371538e-63 |
MsaG003075 | MsaG013523 | 0.858387 | 1.667506e-62 | 1.219896e-59 |
MsaG003075 | MsaG028214 | 0.818702 | 2.980881e-52 | 6.335862e-50 |
MsaG003075 | MsaG037678 | 0.817371 | 5.940328e-52 | 1.219964e-49 |
MsaG003075 | MsaG036647 | 0.877528 | 1.221984e-68 | 1.968285e-65 |
MsaG003075 | MsaG043094 | 0.820434 | 1.204850e-52 | 2.680642e-50 |
MsaG014035 | MsaG003075 | 0.819327 | 2.152579e-52 | 4.651132e-50 |
MsaG015897 | MsaG003075 | 0.803780 | 4.988158e-49 | 7.351295e-47 |
MsaG016842 | MsaG003075 | 0.856909 | 4.548991e-62 | 3.150195e-59 |
MsaG018978 | MsaG003075 | 0.827725 | 2.384900e-54 | 6.471701e-52 |
MsaG019411 | MsaG003075 | 0.831578 | 2.783203e-55 | 8.429221e-53 |
MsaG019414 | MsaG003075 | 0.851722 | 1.410763e-60 | 8.114918e-58 |
MsaG020183 | MsaG003075 | 0.806914 | 1.107703e-49 | 1.756462e-47 |
MsaG022865 | MsaG003075 | 0.835388 | 3.149741e-56 | 1.067373e-53 |
MsaG025955 | MsaG003075 | 0.811935 | 9.370816e-51 | 1.677909e-48 |
MsaG027677 | MsaG003075 | 0.800351 | 2.509573e-48 | 3.420127e-46 |
MsaG027985 | MsaG003075 | 0.804696 | 3.222164e-49 | 4.850510e-47 |
MsaG028014 | MsaG003075 | 0.859101 | 1.022620e-62 | 7.683932e-60 |
MsaG028046 | MsaG003075 | 0.820636 | 1.083471e-52 | 2.423322e-50 |
MsaG028146 | MsaG003075 | 0.803268 | 6.362821e-49 | 9.266829e-47 |
MsaG036531 | MsaG003075 | 0.818656 | 3.053035e-52 | 6.481543e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003075 | MtrunA17_Chr3g0082121 | 32.075 | 477 | 275 | 11 | 65 | 526 | 57 | 499 | 9.12e-71 | 240 |
MsaG003075 | MtrunA17_Chr2g0324011 | 29.783 | 507 | 317 | 10 | 47 | 538 | 3 | 485 | 1.12e-70 | 238 |
MsaG003075 | MtrunA17_Chr1g0172971 | 76.515 | 132 | 16 | 1 | 1 | 132 | 1 | 117 | 1.74e-57 | 201 |
MsaG003075 | MtrunA17_Chr7g0258861 | 34.139 | 331 | 190 | 7 | 46 | 371 | 2 | 309 | 7.84e-55 | 187 |
MsaG003075 | MtrunA17_Chr1g0202341 | 28.755 | 466 | 296 | 9 | 53 | 506 | 53 | 494 | 7.20e-52 | 188 |
MsaG003075 | MtrunA17_Chr8g0363841 | 27.328 | 494 | 321 | 9 | 56 | 536 | 22 | 490 | 4.67e-51 | 186 |
MsaG003075 | MtrunA17_Chr2g0296781 | 27.695 | 538 | 322 | 15 | 55 | 558 | 1 | 505 | 3.30e-49 | 181 |
MsaG003075 | MtrunA17_Chr1g0203721 | 24.441 | 581 | 359 | 15 | 21 | 555 | 11 | 557 | 7.30e-49 | 182 |
MsaG003075 | MtrunA17_Chr1g0164591 | 31.579 | 323 | 190 | 7 | 147 | 454 | 1 | 307 | 4.14e-48 | 170 |
MsaG003075 | MtrunA17_Chr5g0448761 | 26.626 | 492 | 325 | 10 | 53 | 529 | 62 | 532 | 1.53e-47 | 177 |
MsaG003075 | MtrunA17_Chr6g0458391 | 26.070 | 514 | 312 | 12 | 57 | 551 | 231 | 695 | 5.30e-45 | 169 |
MsaG003075 | MtrunA17_Chr5g0441581 | 25.731 | 513 | 321 | 13 | 39 | 536 | 25 | 492 | 1.53e-43 | 165 |
MsaG003075 | MtrunA17_Chr6g0477261 | 31.562 | 320 | 204 | 5 | 196 | 504 | 7 | 322 | 4.64e-43 | 163 |
MsaG003075 | MtrunA17_Chr6g0475591 | 95.890 | 73 | 3 | 0 | 204 | 276 | 1 | 73 | 6.24e-43 | 147 |
MsaG003075 | MtrunA17_Chr2g0287651 | 25.755 | 497 | 325 | 11 | 21 | 502 | 45 | 512 | 6.96e-41 | 158 |
MsaG003075 | MtrunA17_Chr2g0291591 | 25.726 | 482 | 283 | 14 | 53 | 505 | 66 | 501 | 4.33e-39 | 150 |
MsaG003075 | MtrunA17_Chr1g0196541 | 25.647 | 464 | 300 | 12 | 55 | 504 | 1 | 433 | 1.41e-37 | 147 |
MsaG003075 | MtrunA17_Chr1g0198761 | 25.981 | 535 | 344 | 16 | 37 | 546 | 33 | 540 | 9.87e-37 | 145 |
MsaG003075 | MtrunA17_Chr1g0203051 | 22.887 | 485 | 342 | 6 | 66 | 542 | 94 | 554 | 1.06e-34 | 139 |
MsaG003075 | MtrunA17_Chr5g0440451 | 24.476 | 572 | 354 | 18 | 1 | 542 | 1 | 524 | 1.72e-34 | 139 |
MsaG003075 | MtrunA17_Chr2g0329031 | 25.311 | 482 | 308 | 15 | 33 | 502 | 3 | 444 | 1.92e-34 | 138 |
MsaG003075 | MtrunA17_Chr2g0276841 | 24.547 | 497 | 330 | 13 | 65 | 542 | 84 | 554 | 3.16e-34 | 137 |
MsaG003075 | MtrunA17_Chr2g0291581 | 24.609 | 447 | 286 | 9 | 54 | 488 | 74 | 481 | 6.59e-32 | 130 |
MsaG003075 | MtrunA17_Chr5g0448511 | 29.720 | 286 | 184 | 7 | 232 | 505 | 1 | 281 | 1.59e-31 | 128 |
MsaG003075 | MtrunA17_Chr1g0207551 | 23.967 | 484 | 321 | 11 | 44 | 513 | 32 | 482 | 2.44e-31 | 129 |
MsaG003075 | MtrunA17_Chr3g0118611 | 28.358 | 335 | 217 | 10 | 237 | 558 | 111 | 435 | 2.11e-30 | 126 |
MsaG003075 | MtrunA17_Chr5g0431001 | 25.482 | 467 | 307 | 13 | 29 | 475 | 39 | 484 | 2.86e-30 | 124 |
MsaG003075 | MtrunA17_Chr2g0290391 | 24.151 | 530 | 342 | 16 | 45 | 546 | 44 | 541 | 3.63e-30 | 125 |
MsaG003075 | MtrunA17_Chr2g0287061 | 25.251 | 499 | 293 | 16 | 57 | 542 | 189 | 620 | 4.56e-30 | 125 |
MsaG003075 | MtrunA17_Chr3g0080351 | 23.670 | 545 | 341 | 15 | 15 | 535 | 44 | 537 | 1.01e-26 | 115 |
MsaG003075 | MtrunA17_Chr2g0294841 | 24.283 | 453 | 286 | 14 | 48 | 473 | 42 | 464 | 1.80e-23 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003075 | AT4G38180.1 | 26.371 | 474 | 300 | 11 | 52 | 505 | 74 | 518 | 9.82e-48 | 178 |
MsaG003075 | AT4G38170.1 | 29.452 | 292 | 184 | 7 | 251 | 529 | 24 | 306 | 3.09e-37 | 145 |
MsaG003075 | AT3G06250.2 | 24.948 | 477 | 280 | 11 | 39 | 504 | 178 | 587 | 5.97e-34 | 137 |
MsaG003075 | AT3G06250.1 | 24.948 | 477 | 280 | 11 | 39 | 504 | 178 | 587 | 5.97e-34 | 137 |
MsaG003075 | AT3G06250.3 | 24.948 | 477 | 280 | 11 | 39 | 504 | 178 | 587 | 5.97e-34 | 137 |
MsaG003075 | AT4G15090.1 | 26.180 | 466 | 297 | 12 | 66 | 513 | 66 | 502 | 3.81e-32 | 132 |
MsaG003075 | AT4G15090.5 | 26.180 | 466 | 297 | 12 | 66 | 513 | 66 | 502 | 3.81e-32 | 132 |
MsaG003075 | AT4G15090.3 | 26.180 | 466 | 297 | 12 | 66 | 513 | 66 | 502 | 3.81e-32 | 132 |
MsaG003075 | AT4G15090.2 | 26.180 | 466 | 297 | 12 | 66 | 513 | 66 | 502 | 3.81e-32 | 132 |
MsaG003075 | AT4G15090.4 | 26.180 | 466 | 297 | 12 | 66 | 513 | 66 | 502 | 3.81e-32 | 132 |
MsaG003075 | AT3G22170.2 | 22.978 | 544 | 355 | 13 | 1 | 529 | 32 | 526 | 7.17e-31 | 128 |
MsaG003075 | AT3G22170.1 | 22.978 | 544 | 355 | 13 | 1 | 529 | 32 | 526 | 7.17e-31 | 128 |
MsaG003075 | AT2G27110.3 | 28.472 | 288 | 188 | 7 | 229 | 504 | 36 | 317 | 1.52e-29 | 124 |
MsaG003075 | AT2G27110.2 | 28.472 | 288 | 188 | 7 | 229 | 504 | 181 | 462 | 1.62e-29 | 124 |
MsaG003075 | AT2G27110.1 | 28.472 | 288 | 188 | 7 | 229 | 504 | 181 | 462 | 1.62e-29 | 124 |
MsaG003075 | AT1G10240.2 | 22.718 | 515 | 351 | 14 | 48 | 542 | 45 | 532 | 1.22e-28 | 121 |
MsaG003075 | AT1G10240.1 | 22.718 | 515 | 351 | 14 | 48 | 542 | 45 | 532 | 1.22e-28 | 121 |
MsaG003075 | AT5G28530.1 | 22.736 | 519 | 344 | 12 | 56 | 546 | 60 | 549 | 1.58e-28 | 120 |
MsaG003075 | AT5G18960.2 | 23.810 | 441 | 258 | 13 | 37 | 463 | 197 | 573 | 1.61e-28 | 121 |
MsaG003075 | AT5G18960.1 | 23.810 | 441 | 258 | 13 | 37 | 463 | 197 | 573 | 1.61e-28 | 121 |
MsaG003075 | AT1G76320.3 | 24.026 | 462 | 303 | 12 | 66 | 513 | 12 | 439 | 3.44e-28 | 119 |
MsaG003075 | AT5G28530.3 | 24.091 | 440 | 280 | 11 | 56 | 467 | 60 | 473 | 6.34e-28 | 119 |
MsaG003075 | AT5G28530.2 | 24.091 | 440 | 280 | 11 | 56 | 467 | 60 | 473 | 6.34e-28 | 119 |
MsaG003075 | AT1G76320.1 | 24.026 | 462 | 303 | 12 | 66 | 513 | 12 | 439 | 7.07e-28 | 119 |
MsaG003075 | AT1G76320.4 | 24.026 | 462 | 303 | 12 | 66 | 513 | 12 | 439 | 7.07e-28 | 119 |
MsaG003075 | AT1G76320.2 | 23.261 | 460 | 309 | 10 | 66 | 513 | 12 | 439 | 7.37e-28 | 119 |
MsaG003075 | AT1G52520.1 | 24.667 | 450 | 282 | 14 | 57 | 490 | 91 | 499 | 1.51e-26 | 114 |
MsaG003075 | AT4G19990.5 | 23.767 | 446 | 281 | 13 | 57 | 489 | 27 | 426 | 2.00e-24 | 108 |
MsaG003075 | AT4G19990.6 | 27.612 | 268 | 177 | 6 | 235 | 489 | 163 | 426 | 2.07e-24 | 108 |
MsaG003075 | AT4G19990.2 | 27.612 | 268 | 177 | 6 | 235 | 489 | 163 | 426 | 2.07e-24 | 108 |
MsaG003075 | AT4G19990.1 | 27.612 | 268 | 177 | 6 | 235 | 489 | 106 | 369 | 2.12e-24 | 108 |
MsaG003075 | AT4G19990.3 | 23.767 | 446 | 281 | 13 | 57 | 489 | 27 | 426 | 2.19e-24 | 108 |
MsaG003075 | AT4G19990.4 | 23.767 | 446 | 281 | 13 | 57 | 489 | 27 | 426 | 2.19e-24 | 108 |
MsaG003075 | AT4G19990.7 | 23.767 | 446 | 281 | 13 | 57 | 489 | 41 | 440 | 2.27e-24 | 108 |
MsaG003075 | AT1G80010.1 | 25.000 | 468 | 292 | 17 | 57 | 499 | 101 | 534 | 4.36e-24 | 107 |
MsaG003075 | AT2G32250.5 | 23.800 | 500 | 297 | 15 | 15 | 501 | 6 | 434 | 8.14e-24 | 106 |
MsaG003075 | AT2G32250.2 | 23.800 | 500 | 297 | 15 | 15 | 501 | 6 | 434 | 1.30e-23 | 105 |
MsaG003075 | AT2G32250.4 | 23.800 | 500 | 297 | 15 | 15 | 501 | 6 | 434 | 1.30e-23 | 105 |
MsaG003075 | AT2G32250.6 | 23.800 | 500 | 297 | 15 | 15 | 501 | 6 | 434 | 1.42e-23 | 105 |
MsaG003075 | AT2G32250.1 | 23.800 | 500 | 297 | 15 | 15 | 501 | 6 | 434 | 1.42e-23 | 105 |
MsaG003075 | AT2G32250.3 | 23.800 | 500 | 297 | 15 | 15 | 501 | 6 | 434 | 1.42e-23 | 105 |
MsaG003075 | AT2G32250.8 | 24.053 | 449 | 261 | 13 | 66 | 501 | 12 | 393 | 1.99e-23 | 105 |
MsaG003075 | AT2G32250.7 | 24.053 | 449 | 261 | 13 | 66 | 501 | 12 | 393 | 2.06e-23 | 105 |
Find 65 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 1:+51429019 | MsaT003075.1:intron |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 1:+51429565 | MsaT003075.1:CDS |
TAAATCGTCTGGTTTCTTAT+TGG | 0.220826 | 1:-51429146 | None:intergenic |
TCTGATGTTGTCCTGTTGTT+AGG | 0.288908 | 1:-51427849 | None:intergenic |
GGTAATTATGCATATAAAAC+TGG | 0.302948 | 1:+51427705 | MsaT003075.1:CDS |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 1:-51428040 | None:intergenic |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 1:+51428356 | MsaT003075.1:CDS |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 1:-51428406 | None:intergenic |
ATGATTGTCAAAACCAATAA+AGG | 0.364908 | 1:-51429032 | None:intergenic |
GAAGGCCTACTTCAGACTTT+AGG | 0.375686 | 1:+51429390 | MsaT003075.1:CDS |
GAGGGATAATCATGCTGAAT+TGG | 0.376108 | 1:+51429598 | MsaT003075.1:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 1:+51428413 | MsaT003075.1:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 1:+51428405 | MsaT003075.1:CDS |
GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 1:+51428115 | MsaT003075.1:CDS |
TCATGCTGAATTGGACTTCA+AGG | 0.399206 | 1:+51429607 | MsaT003075.1:CDS |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 1:+51429739 | MsaT003075.1:CDS |
GCTCTTATAAATTCTAAAGT+TGG | 0.400120 | 1:+51428083 | MsaT003075.1:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.407680 | 1:+51427970 | MsaT003075.1:CDS |
CGGTCTGTGTATAAATCGTC+TGG | 0.420871 | 1:-51429157 | None:intergenic |
GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 1:+51428128 | MsaT003075.1:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 1:+51428053 | MsaT003075.1:CDS |
ACAAAATAAGAAATTTGATA+AGG | 0.431852 | 1:+51427767 | MsaT003075.1:CDS |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 1:+51427918 | MsaT003075.1:CDS |
AACCGCATCAGCTGACTGTT+AGG | 0.450316 | 1:-51429659 | None:intergenic |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 1:+51429439 | MsaT003075.1:CDS |
TCCATGATACTTTATTGCTA+GGG | 0.464004 | 1:-51427638 | None:intergenic |
AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 1:+51428116 | MsaT003075.1:CDS |
GTTTGCTTAATCCTAACAAC+AGG | 0.467124 | 1:+51427838 | MsaT003075.1:CDS |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 1:+51429438 | MsaT003075.1:CDS |
CTTGCTTTGCATTTATTCAC+AGG | 0.480587 | 1:+51429705 | MsaT003075.1:CDS |
TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 1:-51428167 | None:intergenic |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 1:-51429741 | None:intergenic |
TTCCATGATACTTTATTGCT+AGG | 0.489989 | 1:-51427639 | None:intergenic |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 1:+51429579 | MsaT003075.1:CDS |
CGTTATGTTTGTAACAAACA+AGG | 0.494754 | 1:+51427801 | MsaT003075.1:CDS |
AGCTGGAATATCTTTGAAGC+TGG | 0.496270 | 1:+51427935 | MsaT003075.1:CDS |
CCCCTAGCAATAAAGTATCA+TGG | 0.498381 | 1:+51427637 | MsaT003075.1:CDS |
TATGAGGAGGACACGACAAA+AGG | 0.501557 | 1:+51429755 | MsaT003075.1:CDS |
CTAAGGTAACATGAATGCTC+TGG | 0.504903 | 1:-51428023 | None:intergenic |
TAACAAACAAGGTTTCAAGA+AGG | 0.511682 | 1:+51427812 | MsaT003075.1:CDS |
GAATGCTCTGGTTTATGTAA+TGG | 0.517705 | 1:-51428011 | None:intergenic |
TTACAACCAACCCTTTCCTC+CGG | 0.518116 | 1:-51427912 | None:intergenic |
TGTCTTCTGTAGCATCAACT+TGG | 0.520245 | 1:-51428301 | None:intergenic |
TGTGTATAAGATATATAGAT+GGG | 0.523615 | 1:+51427971 | MsaT003075.1:CDS |
ATGAGGAGGACACGACAAAA+GGG | 0.528774 | 1:+51429756 | MsaT003075.1:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 1:-51429736 | None:intergenic |
TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 1:+51429228 | MsaT003075.1:CDS |
GGCCTACTTCAGACTTTAGG+TGG | 0.536366 | 1:+51429393 | MsaT003075.1:CDS |
AACAAACAAGGTTTCAAGAA+GGG | 0.554561 | 1:+51427813 | MsaT003075.1:CDS |
TTCACAAACTCAATAACCAA+TGG | 0.554620 | 1:-51427876 | None:intergenic |
TAAAGAATAGAACAAGTGAA+TGG | 0.555459 | 1:-51429547 | None:intergenic |
GGAGTAACATTGAGAACTAT+CGG | 0.556951 | 1:-51427616 | None:intergenic |
CTTACGAAAATCGTATGCAT+TGG | 0.559732 | 1:+51429426 | MsaT003075.1:CDS |
CCATGATACTTTATTGCTAG+GGG | 0.563054 | 1:-51427637 | None:intergenic |
CACGACAAAAGGGTCTGCGT+TGG | 0.568588 | 1:+51429766 | MsaT003075.1:CDS |
GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 1:+51428131 | MsaT003075.1:CDS |
TTACTGATTCATGCTGAGAG+TGG | 0.579535 | 1:+51427558 | MsaT003075.1:CDS |
TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 1:+51428122 | MsaT003075.1:CDS |
TGAATAAATGCAAAGCAAGC+TGG | 0.591761 | 1:-51429701 | None:intergenic |
ATCCTAACAGTCAGCTGATG+CGG | 0.594920 | 1:+51429657 | MsaT003075.1:CDS |
GACAACATCAGACAGTCCAT+TGG | 0.604607 | 1:+51427860 | MsaT003075.1:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 1:+51429742 | MsaT003075.1:CDS |
ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 1:+51427513 | MsaT003075.1:CDS |
AGCCACCTAAAGTCTGAAGT+AGG | 0.632459 | 1:-51429395 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 1:+51429580 | MsaT003075.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 51427504 | 51429802 | 51427504 | ID=MsaG003075 |
Chr1 | mRNA | 51427504 | 51429802 | 51427504 | ID=MsaT003075.1;Parent=MsaG003075 |
Chr1 | exon | 51427504 | 51428434 | 51427504 | ID=MsaT003075.1.exon1;Parent=MsaT003075.1 |
Chr1 | CDS | 51427504 | 51428434 | 51427504 | ID=cds.MsaT003075.1;Parent=MsaT003075.1 |
Chr1 | exon | 51429029 | 51429181 | 51429029 | ID=MsaT003075.1.exon2;Parent=MsaT003075.1 |
Chr1 | CDS | 51429029 | 51429181 | 51429029 | ID=cds.MsaT003075.1;Parent=MsaT003075.1 |
Chr1 | exon | 51429210 | 51429802 | 51429210 | ID=MsaT003075.1.exon3;Parent=MsaT003075.1 |
Chr1 | CDS | 51429210 | 51429802 | 51429210 | ID=cds.MsaT003075.1;Parent=MsaT003075.1 |
Gene Sequence |
Protein sequence |