AlfalfaGEDB | MsaG003098

M. sativa ssp. caerulea / MsaG003098

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048511 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003098	XP_003590456.1	93.720	207	10	3	1	206	1	205	5.23e-98	293

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003098	sp\|Q9SJK7\|TCP11_ARATH	55.556	144	46	4	50	192	43	169	5.32e-39	135

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003098	tr\|G7IA90\|G7IA90_MEDTR	93.720	207	10	3	1	206	1	205	2.50e-98	293

TFs/TRs:

Gene ID	Type	Classification
MsaG003098	TF	TCP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000455	MsaG003098	0.809313	3.434010e-50	5.767563e-48
MsaG000730	MsaG003098	0.800151	2.754925e-48	3.737513e-46
MsaG002560	MsaG003098	0.809740	2.783981e-50	4.724528e-48
MsaG003098	MsaG003565	0.803279	6.328576e-49	9.219486e-47
MsaG003098	MsaG003982	0.808331	5.558291e-50	9.117476e-48
MsaG003098	MsaG006862	0.831689	2.613065e-55	7.940327e-53
MsaG003098	MsaG006986	0.817199	6.492477e-52	1.327490e-49
MsaG003098	MsaG011819	0.802482	9.227696e-49	1.319902e-46
MsaG003098	MsaG011884	0.811776	1.014653e-50	1.809632e-48
MsaG003098	MsaG016655	0.822046	5.140801e-53	1.193667e-50
MsaG003098	MsaG016767	0.811414	1.215248e-50	2.148222e-48
MsaG003098	MsaG020595	0.802585	8.790861e-49	1.260387e-46
MsaG003098	MsaG021314	0.847302	2.377871e-59	1.176297e-56
MsaG003098	MsaG021640	0.801430	1.515077e-48	2.115718e-46
MsaG003098	MsaG023939	0.808754	4.519188e-50	7.489252e-48
MsaG003098	MsaG024283	0.807903	6.848873e-50	1.111998e-47
MsaG003098	MsaG026584	0.815292	1.724543e-51	3.358408e-49
MsaG003098	MsaG028266	0.804157	4.168404e-49	6.197344e-47
MsaG003098	MsaG028372	0.800912	1.931267e-48	2.665413e-46
MsaG003098	MsaG028637	0.820361	1.252207e-52	2.780560e-50
MsaG003098	MsaG030474	0.813109	5.205257e-51	9.595510e-49
MsaG003098	MsaG033499	0.804363	3.777184e-49	5.642609e-47
MsaG003098	MsaG033695	0.826437	4.831873e-54	1.264885e-51
MsaG003098	MsaG034340	0.835774	2.519131e-56	8.635760e-54
MsaG003098	MsaG040441	0.826780	4.007093e-54	1.058942e-51
MsaG003098	MsaG040567	0.822053	5.121943e-53	1.189508e-50
MsaG003098	MsaG041791	0.804222	4.040393e-49	6.016166e-47
MsaG003098	MsaG046441	0.801047	1.812905e-48	2.509709e-46
MsaG003098	MsaG046909	0.801214	1.676189e-48	2.329220e-46
MsaG003098	MsaG014196	0.801575	1.415268e-48	1.982824e-46
MsaG003098	MsaG027355	0.818253	3.764291e-52	7.908321e-50
MsaG003098	MsaG030823	0.806845	1.144938e-49	1.812598e-47
MsaG003098	MsaG032852	0.819063	2.470010e-52	5.300157e-50
MsaG003098	MsaG035350	0.808573	4.936213e-50	8.144695e-48
MsaG003098	MsaG043460	0.805098	2.658143e-49	4.039059e-47
MsaG003098	MsaG041383	0.820922	9.317832e-53	2.100018e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003098	MtrunA17_Chr1g0180911	93.720	207	10	3	1	206	1	205	4.81e-102	293
MsaG003098	MtrunA17_Chr7g0224581	60.577	104	36	2	15	118	20	118	1.15e-36	129
MsaG003098	MtrunA17_Chr8g0350941	78.378	74	16	0	49	122	79	152	2.83e-35	127
MsaG003098	MtrunA17_Chr2g0277361	60.000	100	29	1	14	113	105	193	2.85e-35	129
MsaG003098	MtrunA17_Chr4g0060601	73.171	82	19	1	31	112	81	159	4.30e-35	128
MsaG003098	MtrunA17_Chr5g0416581	73.684	76	20	0	49	124	66	141	8.25e-35	126
MsaG003098	MtrunA17_Chr1g0211941	72.500	80	17	2	34	112	20	95	1.58e-34	123
MsaG003098	MtrunA17_Chr1g0164881	68.235	85	21	2	39	121	25	105	4.01e-34	121
MsaG003098	MtrunA17_Chr1g0204001	73.077	78	21	0	45	122	59	136	1.31e-33	122

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003098	AT2G37000.1	55.556	144	46	4	50	192	43	169	5.41e-40	135
MsaG003098	AT1G58100.1	55.932	118	41	1	48	154	58	175	8.80e-36	130
MsaG003098	AT1G69690.1	67.816	87	25	2	28	113	31	115	1.21e-35	128
MsaG003098	AT1G72010.1	72.973	74	20	0	39	112	52	125	7.09e-35	127
MsaG003098	AT5G08330.1	76.316	76	14	1	50	121	31	106	8.34e-35	123
MsaG003098	AT3G47620.1	76.000	75	17	1	39	112	105	179	1.11e-34	128
MsaG003098	AT3G27010.2	62.626	99	30	3	19	111	42	139	4.45e-34	123
MsaG003098	AT3G27010.1	62.626	99	30	3	19	111	42	139	4.45e-34	123
MsaG003098	AT2G45680.1	77.027	74	17	0	49	122	74	147	5.49e-34	124
MsaG003098	AT5G23280.1	65.556	90	30	1	51	140	40	128	1.50e-33	120
MsaG003098	AT5G51910.1	70.370	81	23	1	43	122	49	129	4.41e-32	118
MsaG003098	AT5G51910.2	70.370	81	23	1	43	122	49	129	4.41e-32	118
MsaG003098	AT1G35560.1	78.462	65	14	0	48	112	53	117	8.67e-32	118
MsaG003098	AT5G41030.1	59.302	86	32	1	47	132	65	147	7.58e-31	113
MsaG003098	AT3G45150.1	45.455	99	50	2	48	142	15	113	3.31e-22	89.0
MsaG003098	AT1G58100.2	88.571	35	4	0	48	82	58	92	2.74e-15	73.6

Find 87 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTGGTGTGACGGTCTT+TGG	0.326298	1:+51793773	None:intergenic
TGGAAGGTTTGGTTTCTGAT+TGG	0.336354	1:+51793880	None:intergenic
CGACTGTTGGTCCCGGCGGT+GGG	0.370781	1:-51793512	MsaT003098.1:CDS
CCTGTCTCAGCCGGCGGGGA+TGG	0.373484	1:-51793436	MsaT003098.1:CDS
ACGACTGTTGGTCCCGGCGG+TGG	0.375769	1:-51793513	MsaT003098.1:CDS
GGAAGGTTTGGTTTCTGATT+GGG	0.382038	1:+51793881	None:intergenic
ACTGTTGGTCCCGGCGGTGG+GGG	0.398278	1:-51793510	MsaT003098.1:CDS
CGGTCCGGCGGGGACAGTTC+CGG	0.401737	1:+51793602	None:intergenic
TGTTACGGCGGTGGAAGGTT+TGG	0.414434	1:+51793869	None:intergenic
TCGGACGGTGAGTTTGGTGT+TGG	0.415353	1:+51793818	None:intergenic
CGGACGGTGAGTTTGGTGTT+GGG	0.422384	1:+51793819	None:intergenic
AGGTCTTCGGACGGTGAGTT+TGG	0.426516	1:+51793812	None:intergenic
CAGCCGGCGGGGATGGATTA+CGG	0.432604	1:-51793429	MsaT003098.1:CDS
GGTGGCGACGGTGGTTGTTA+CGG	0.437898	1:+51793854	None:intergenic
GACTGTTGGTCCCGGCGGTG+GGG	0.441550	1:-51793511	MsaT003098.1:CDS
TTTGGTGTTGGGATCGGAAG+AGG	0.447134	1:+51793830	None:intergenic
GACCGTCACACCAAGGTTAA+CGG	0.448472	1:-51793768	MsaT003098.1:CDS
GCATACGGACACGGCGGCCA+CGG	0.450952	1:+51793745	None:intergenic
GTTGGGATCGGAAGAGGTGG+TGG	0.463601	1:+51793836	None:intergenic
CGGCAGCTCGGCTGTTGCAT+CGG	0.466946	1:+51793465	None:intergenic
CCATCCCCGCCGGCTGAGAC+AGG	0.467844	1:+51793436	None:intergenic
CCGTCGATCATCGCCGCTAC+AGG	0.469019	1:-51793627	MsaT003098.1:CDS
ATCGAGAGGTGGAAGGTCTT+CGG	0.469473	1:+51793799	None:intergenic
CTTGACCTGTCTCAGCCGGC+GGG	0.470366	1:-51793441	MsaT003098.1:CDS
TTCTCCGTTTAAGTCTTCCT+CGG	0.470391	1:-51793568	MsaT003098.1:CDS
CGGAACTGTCCCCGCCGGAC+CGG	0.473172	1:-51793601	MsaT003098.1:CDS
AACGGAGAAGAGGTGGAAAC+CGG	0.477385	1:+51793582	None:intergenic
GAGGTGGAAACCGGTCCGGC+GGG	0.478968	1:+51793591	None:intergenic
CGGCGCAGAGTGGCGGCATA+CGG	0.487397	1:+51793730	None:intergenic
GGCCGTTAACCTTGGTGTGA+CGG	0.487689	1:+51793766	None:intergenic
GACCTAGCTCACGTGTGAGC+TGG	0.488472	1:+51793697	None:intergenic
TGGATTACGGCACGGCGAGC+AGG	0.491585	1:-51793416	MsaT003098.1:CDS
ATCGGAAGAGGTGGTGGCGA+CGG	0.493308	1:+51793842	None:intergenic
CACACCAAGGTTAACGGCCG+TGG	0.500084	1:-51793762	MsaT003098.1:CDS
GGTGAGTTTGGTGTTGGGAT+CGG	0.500790	1:+51793824	None:intergenic
CCTGTGACGACTGTTGGTCC+CGG	0.512876	1:-51793519	MsaT003098.1:CDS
GGTGTTGGGATCGGAAGAGG+TGG	0.520667	1:+51793833	None:intergenic
CTGTTGGTCCCGGCGGTGGG+GGG	0.522672	1:-51793509	MsaT003098.1:CDS
AGAAGAGGTGGAAACCGGTC+CGG	0.523967	1:+51793587	None:intergenic
ATCATCGCCGCTACAGGTAC+CGG	0.527492	1:-51793621	MsaT003098.1:CDS
GTGGTTGTTACGGCGGTGGA+AGG	0.530957	1:+51793864	None:intergenic
CTTGGTGTGACGGTCTTTGG+TGG	0.533419	1:+51793776	None:intergenic
GCGGCCACGGCCGTTAACCT+TGG	0.533810	1:+51793758	None:intergenic
TAAGTCTTCCTCGGTGCCGT+CGG	0.539714	1:-51793559	MsaT003098.1:CDS
CCGTCTTGACCTGTCTCAGC+CGG	0.539844	1:-51793445	MsaT003098.1:CDS
AGAGGTGGAAACCGGTCCGG+CGG	0.541236	1:+51793590	None:intergenic
GACGGTGGTTGTTACGGCGG+TGG	0.541430	1:+51793860	None:intergenic
TTCCAGCTCACACGTGAGCT+AGG	0.544068	1:-51793699	MsaT003098.1:CDS
GGCACCGAGGAAGACTTAAA+CGG	0.544702	1:+51793564	None:intergenic
CAGCTCGGCTGTTGCATCGG+CGG	0.554896	1:+51793468	None:intergenic
ATTCTAGCGGCGCAGAGTGG+CGG	0.558629	1:+51793723	None:intergenic
CCGGGACCAACAGTCGTCAC+AGG	0.561674	1:+51793519	None:intergenic
TCTTGACCTGTCTCAGCCGG+CGG	0.565908	1:-51793442	MsaT003098.1:CDS
GGAAGAGGTGGTGGCGACGG+TGG	0.571531	1:+51793845	None:intergenic
GACAGTTCCGGTACCTGTAG+CGG	0.580616	1:+51793614	None:intergenic
CCTGTAGCGGCGATGATCGA+CGG	0.581417	1:+51793627	None:intergenic
GTCTTTGGTGGATCGAGAGG+TGG	0.588804	1:+51793788	None:intergenic
TGCAAAAGCAGCGACGTGAA+CGG	0.596315	1:+51793381	None:intergenic
AGACTTAAACGGAGAAGAGG+TGG	0.603538	1:+51793575	None:intergenic
GTGCCGTAATCCATCCCCGC+CGG	0.610684	1:+51793426	None:intergenic
GACAGGTCAAGACGGCAGCT+CGG	0.611079	1:+51793453	None:intergenic
TACAACAATGTCTTCATCAG+AGG	0.612302	1:-51793928	None:intergenic
CGATCGTTTCACCGTCGGAA+CGG	0.615737	1:+51793673	None:intergenic
GGAAGACTTAAACGGAGAAG+AGG	0.618830	1:+51793572	None:intergenic
GTTCAGCCTGTGACGACTGT+TGG	0.621754	1:-51793525	MsaT003098.1:CDS
CCGGCTGAGACAGGTCAAGA+CGG	0.630042	1:+51793445	None:intergenic
AGAGTGGCGGCATACGGACA+CGG	0.630769	1:+51793736	None:intergenic
ATTGGGTTTGAGAGAATGTG+TGG	0.635459	1:+51793898	None:intergenic
AGGTGGAAACCGGTCCGGCG+GGG	0.639096	1:+51793592	None:intergenic
GGTACCGGAACTGTCCCCGC+CGG	0.641499	1:-51793606	MsaT003098.1:CDS
TTGGTGGATCGAGAGGTGGA+AGG	0.641652	1:+51793792	None:intergenic
GGCGACGGTGGTTGTTACGG+CGG	0.645530	1:+51793857	None:intergenic
CCACTCGATCGTTTCACCGT+CGG	0.646740	1:+51793668	None:intergenic
GAGCTAGGTCACCGTTCCGA+CGG	0.649168	1:-51793684	MsaT003098.1:CDS
ACGGTCTTTGGTGGATCGAG+AGG	0.651900	1:+51793785	None:intergenic
GGCGGGGATGGATTACGGCA+CGG	0.663996	1:-51793424	MsaT003098.1:CDS
CACCAAAGACCGTCACACCA+AGG	0.680883	1:-51793775	MsaT003098.1:CDS
ACAAGAAACCGACGGCACCG+AGG	0.684600	1:+51793551	None:intergenic
AGAGGTGGAAGGTCTTCGGA+CGG	0.686301	1:+51793803	None:intergenic
TTGACCTGTCTCAGCCGGCG+GGG	0.687922	1:-51793440	MsaT003098.1:CDS
TGAACATGACAAGAAACCGA+CGG	0.690502	1:+51793543	None:intergenic
AAGATTCTAGCGGCGCAGAG+TGG	0.698200	1:+51793720	None:intergenic
CCGACGGTGAAACGATCGAG+TGG	0.701087	1:-51793668	MsaT003098.1:CDS
TGTGAGCTGGAAGATTCTAG+CGG	0.731020	1:+51793710	None:intergenic
TTTGCAACCGTCGACCACGG+GGG	0.740183	1:-51793364	MsaT003098.1:CDS
GTGACGACTGTTGGTCCCGG+CGG	0.740863	1:-51793516	MsaT003098.1:CDS
GTGGCGGCATACGGACACGG+CGG	0.797562	1:+51793739	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	51793323	51793943	51793323	ID=MsaG003098
Chr1	mRNA	51793323	51793943	51793323	ID=MsaT003098.1;Parent=MsaG003098
Chr1	exon	51793323	51793943	51793323	ID=MsaT003098.1.exon1;Parent=MsaT003098.1
Chr1	CDS	51793323	51793943	51793323	ID=cds.MsaT003098.1;Parent=MsaT003098.1

Gene Sequence

>MsaT003098.1

ATGTCTTCATCAGAGGTAGTTATCCACACATTCTCTCAAACCCAATCAGAAACCAAACCTTCCACCGCCGTAACAACCACCGTCGCCACCACCTCTTCCGATCCCAACACCAAACTCACCGTCCGAAGACCTTCCACCTCTCGATCCACCAAAGACCGTCACACCAAGGTTAACGGCCGTGGCCGCCGTGTCCGTATGCCGCCACTCTGCGCCGCTAGAATCTTCCAGCTCACACGTGAGCTAGGTCACCGTTCCGACGGTGAAACGATCGAGTGGCTTCTTCGTCATGCTGAGCCGTCGATCATCGCCGCTACAGGTACCGGAACTGTCCCCGCCGGACCGGTTTCCACCTCTTCTCCGTTTAAGTCTTCCTCGGTGCCGTCGGTTTCTTGTCATGTTCAGCCTGTGACGACTGTTGGTCCCGGCGGTGGGGGGATTTTCGGTATGGCTTTTCCGCCGATGCAACAGCCGAGCTGCCGTCTTGACCTGTCTCAGCCGGCGGGGATGGATTACGGCACGGCGAGCAGGTATCGTCATATGCCGTTCACGTCGCTGCTTTTGCAACCGTCGACCACGGGGGAGGAGAATCAACAAGAAGAAGAAGCTCTTAACGAACAATGA

Protein sequence

>MsaT003098.1

MSSSEVVIHTFSQTQSETKPSTAVTTTVATTSSDPNTKLTVRRPSTSRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAGPVSTSSPFKSSSVPSVSCHVQPVTTVGPGGGGIFGMAFPPMQQPSCRLDLSQPAGMDYGTASRYRHMPFTSLLLQPSTTGEENQQEEEALNEQ*