AlfalfaGEDB | MsaG003163

M. sativa ssp. caerulea / MsaG003163

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010045 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071289 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000280 GO:2001141
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003163	XP_013468307.1	95.122	164	8	0	5	168	2	165	3.94e-110	320

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003163	sp\|Q9SLD4\|ZAT11_ARATH	45.251	179	84	6	1	168	1	176	1.08e-41	140

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003163	tr\|A0A072VJY7\|A0A072VJY7_MEDTR	95.122	164	8	0	5	168	2	165	1.88e-110	320

TFs/TRs:

Gene ID	Type	Classification
MsaG003163	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000110	MsaG003163	0.822652	3.724258e-53	8.789444e-51
MsaG000228	MsaG003163	0.833679	8.427168e-56	2.714021e-53
MsaG000419	MsaG003163	0.820585	1.113006e-52	2.486049e-50
MsaG001286	MsaG003163	0.824738	1.215811e-53	3.036468e-51
MsaG001724	MsaG003163	0.838697	4.537645e-57	1.700642e-54
MsaG003163	MsaG003190	0.814999	2.002124e-51	3.870199e-49
MsaG003163	MsaG003430	0.806828	1.154479e-49	1.826972e-47
MsaG003163	MsaG003659	0.803195	6.586435e-49	9.576605e-47
MsaG003163	MsaG003863	0.811312	1.278439e-50	2.254312e-48
MsaG003163	MsaG004257	0.834923	4.121853e-56	1.377504e-53
MsaG003163	MsaG004648	0.811025	1.474722e-50	2.582139e-48
MsaG003163	MsaG005239	0.875068	8.541060e-68	1.231857e-64
MsaG003163	MsaG006090	0.811834	9.854855e-51	1.760160e-48
MsaG003163	MsaG006323	0.804622	3.338396e-49	5.016898e-47
MsaG003163	MsaG006855	0.800034	2.908990e-48	3.936191e-46
MsaG003163	MsaG007191	0.822059	5.105267e-53	1.185819e-50
MsaG003163	MsaG007565	0.802216	1.046241e-48	1.487364e-46
MsaG003163	MsaG010058	0.801932	1.196272e-48	1.689702e-46
MsaG003163	MsaG010112	0.807048	1.037965e-49	1.651117e-47
MsaG003163	MsaG010291	0.817183	6.544263e-52	1.337529e-49
MsaG003163	MsaG010365	0.805922	1.789006e-49	2.771148e-47
MsaG003163	MsaG010372	0.813490	4.296830e-51	7.996803e-49
MsaG003163	MsaG010860	0.804902	2.919118e-49	4.415551e-47
MsaG003163	MsaG011109	0.822699	3.631574e-53	8.581749e-51
MsaG003163	MsaG011592	0.815003	1.998226e-51	3.863040e-49
MsaG003163	MsaG011833	0.809094	3.824234e-50	6.389651e-48
MsaG003163	MsaG011941	0.801224	1.668595e-48	2.319161e-46
MsaG003163	MsaG012203	0.809384	3.316463e-50	5.579855e-48
MsaG003163	MsaG012467	0.809876	2.603152e-50	4.432106e-48
MsaG003163	MsaG012496	0.805683	2.006323e-49	3.090448e-47
MsaG003163	MsaG012497	0.827168	3.238043e-54	8.650548e-52
MsaG003163	MsaG012778	0.800236	2.647834e-48	3.599092e-46
MsaG003163	MsaG013267	0.809655	2.902102e-50	4.914963e-48
MsaG003163	MsaG017303	0.820238	1.335716e-52	2.956474e-50
MsaG003163	MsaG017183	0.818452	3.395170e-52	7.169606e-50
MsaG003163	MsaG017391	0.804786	3.086792e-49	4.656544e-47
MsaG003163	MsaG018069	0.818374	3.535357e-52	7.450539e-50
MsaG003163	MsaG018397	0.832814	1.380559e-55	4.334311e-53
MsaG003163	MsaG018842	0.836227	1.935653e-56	6.726887e-54
MsaG003163	MsaG019178	0.800308	2.560946e-48	3.486633e-46
MsaG003163	MsaG019188	0.801264	1.637396e-48	2.277900e-46
MsaG003163	MsaG019308	0.800876	1.963562e-48	2.707870e-46
MsaG003163	MsaG019657	0.817808	4.740142e-52	9.845006e-50
MsaG003163	MsaG019807	0.816837	7.820878e-52	1.584178e-49
MsaG003163	MsaG020202	0.807520	8.250710e-50	1.327316e-47
MsaG003163	MsaG020480	0.804599	3.375304e-49	5.069621e-47
MsaG003163	MsaG020716	0.845865	5.845874e-59	2.756197e-56
MsaG003163	MsaG020718	0.805521	2.169127e-49	3.328504e-47
MsaG003163	MsaG022803	0.835696	2.634932e-56	9.011514e-54
MsaG003163	MsaG023962	0.851231	1.939582e-60	1.096781e-57
MsaG003163	MsaG026849	0.811440	1.199712e-50	2.122087e-48
MsaG003163	MsaG027182	0.830914	4.044857e-55	1.201634e-52
MsaG003163	MsaG027395	0.818031	4.222149e-52	8.819845e-50
MsaG003163	MsaG027505	0.860516	3.849786e-63	3.053034e-60
MsaG003163	MsaG027839	0.807069	1.027391e-49	1.635122e-47
MsaG003163	MsaG028419	0.820825	9.807710e-53	2.204598e-50
MsaG003163	MsaG029070	0.811169	1.372684e-50	2.412020e-48
MsaG003163	MsaG029792	0.800432	2.417059e-48	3.300048e-46
MsaG003163	MsaG031201	0.805758	1.936045e-49	2.987391e-47
MsaG003163	MsaG032260	0.823176	2.815638e-53	6.739791e-51
MsaG003163	MsaG033815	0.814577	2.480097e-51	4.743202e-49
MsaG003163	MsaG034130	0.807808	7.173532e-50	1.162025e-47
MsaG003163	MsaG035008	0.817327	6.076759e-52	1.246582e-49
MsaG003163	MsaG035171	0.835008	3.923945e-56	1.314750e-53
MsaG003163	MsaG037920	0.818003	4.285617e-52	8.946004e-50
MsaG003163	MsaG039251	0.801659	1.359958e-48	1.909019e-46
MsaG003163	MsaG043391	0.825823	6.751402e-54	1.737422e-51
MsaG003163	MsaG043804	0.809248	3.546920e-50	5.947866e-48
MsaG003163	MsaG044445	0.801120	1.751531e-48	2.428789e-46
MsaG003163	MsaG044957	0.820572	1.120513e-52	2.501971e-50
MsaG003163	MsaG045060	0.814083	3.185698e-51	6.017788e-49
MsaG003163	MsaG045061	0.812380	7.503585e-51	1.358375e-48
MsaG003163	MsaG045130	0.816928	7.464393e-52	1.515568e-49
MsaG003163	MsaG045367	0.806852	1.141398e-49	1.807283e-47
MsaG003163	MsaG045699	0.831693	2.608213e-55	7.926295e-53
MsaG003163	MsaG045834	0.801561	1.424303e-48	1.994831e-46
MsaG003163	MsaG045997	0.843127	3.161336e-58	1.362978e-55
MsaG003163	MsaG046143	0.828084	1.956738e-54	5.363422e-52
MsaG003163	MsaG046586	0.801951	1.185801e-48	1.675604e-46
MsaG003163	MsaG000809	0.820746	1.022567e-52	2.293754e-50
MsaG003163	MsaG002774	0.801942	1.190804e-48	1.682339e-46
MsaG003163	MsaG014412	0.849930	4.484236e-60	2.424508e-57
MsaG003163	MsaG013007	0.801318	1.596224e-48	2.223396e-46
MsaG003163	MsaG013379	0.807366	8.894540e-50	1.425588e-47
MsaG003163	MsaG021945	0.818063	4.152869e-52	8.682103e-50
MsaG003163	MsaG020277	0.824328	1.516967e-53	3.746698e-51
MsaG003163	MsaG019828	0.818496	3.318626e-52	7.015978e-50
MsaG003163	MsaG034732	0.842761	3.953417e-58	1.684644e-55
MsaG003163	MsaG029979	0.801105	1.764480e-48	2.445871e-46
MsaG003163	MsaG032683	0.807163	9.816385e-50	1.565796e-47
MsaG003163	MsaG033283	0.802015	1.150660e-48	1.628285e-46
MsaG003163	MsaG037879	0.803339	6.150437e-49	8.972288e-47
MsaG003163	MsaG036787	0.813421	4.448778e-51	8.265517e-49
MsaG003163	MsaG037076	0.809258	3.529156e-50	5.919512e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003163	MtrunA17_Chr1g0182181	95.122	164	8	0	5	168	2	165	3.62e-114	320
MsaG003163	MtrunA17_Chr7g0263121	64.327	171	53	4	1	165	1	169	5.51e-71	211
MsaG003163	MtrunA17_Chr1g0182161	63.429	175	47	8	1	166	2	168	8.18e-63	191
MsaG003163	MtrunA17_Chr7g0263131	58.896	163	57	5	1	162	3	156	9.55e-58	178
MsaG003163	MtrunA17_Chr2g0327901	49.677	155	49	6	1	153	1	128	1.10e-35	120
MsaG003163	MtrunA17_Chr1g0212561	41.262	206	77	8	1	167	1	201	2.00e-33	117
MsaG003163	MtrunA17_Chr7g0222831	52.101	119	49	3	1	115	1	115	4.67e-32	113
MsaG003163	MtrunA17_Chr2g0320311	32.314	229	61	7	7	154	68	283	3.09e-22	90.5
MsaG003163	MtrunA17_Chr1g0197281	34.826	201	65	7	10	146	98	296	2.46e-21	89.0
MsaG003163	MtrunA17_Chr1g0180311	38.095	147	45	3	13	113	80	226	1.84e-19	82.8
MsaG003163	MtrunA17_Chr1g0207451	41.584	101	54	2	14	112	60	157	3.19e-17	76.3
MsaG003163	MtrunA17_Chr4g0012691	46.429	84	35	2	38	111	220	303	4.55e-16	74.3
MsaG003163	MtrunA17_Chr4g0027991	31.707	164	56	3	38	154	113	267	6.44e-16	73.2
MsaG003163	MtrunA17_Chr7g0231181	38.983	118	54	6	38	152	240	342	1.87e-15	72.4
MsaG003163	MtrunA17_Chr3g0134711	36.620	142	66	5	2	119	37	178	6.99e-14	67.0
MsaG003163	MtrunA17_Chr1g0152661	36.066	122	58	4	36	146	79	191	2.72e-13	65.5
MsaG003163	MtrunA17_Chr1g0188911	34.783	115	34	3	38	112	44	157	7.98e-13	63.5
MsaG003163	MtrunA17_Chr1g0188901	40.000	95	42	3	38	117	60	154	1.10e-12	62.8
MsaG003163	MtrunA17_Chr4g0061301	33.333	126	45	3	38	124	348	473	7.75e-12	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003163	AT2G37430.1	45.251	179	84	6	1	168	1	176	1.10e-42	140
MsaG003163	AT3G53600.1	43.956	182	79	7	1	168	1	173	1.04e-36	125
MsaG003163	AT2G28710.1	46.061	165	69	7	1	158	1	152	9.93e-33	114
MsaG003163	AT5G59820.1	45.455	154	71	5	11	158	12	158	5.73e-29	105
MsaG003163	AT2G28200.1	35.714	196	73	7	10	154	73	266	2.16e-26	101
MsaG003163	AT3G46090.1	43.293	164	67	6	9	158	11	162	2.45e-26	98.6
MsaG003163	AT3G46080.1	43.902	164	75	7	5	158	4	160	7.61e-26	97.1
MsaG003163	AT3G46070.1	40.491	163	79	7	1	151	1	157	1.75e-22	88.6
MsaG003163	AT5G03510.1	41.497	147	39	6	10	109	69	215	1.02e-21	89.4
MsaG003163	AT5G04390.1	36.471	170	47	5	1	112	89	255	1.31e-20	87.4
MsaG003163	AT3G10470.1	44.660	103	26	2	38	109	182	284	1.91e-18	81.6
MsaG003163	AT2G45120.1	36.196	163	74	5	13	152	150	305	1.02e-17	79.0
MsaG003163	AT3G60580.1	32.530	166	76	4	13	152	126	281	1.49e-16	75.5
MsaG003163	AT1G02030.1	48.718	78	39	1	38	114	160	237	1.04e-15	72.8
MsaG003163	AT1G27730.1	33.113	151	87	4	9	149	50	196	3.03e-15	70.9
MsaG003163	AT1G49900.1	36.667	120	70	3	25	140	735	852	9.17e-15	71.6
MsaG003163	AT1G49900.1	33.582	134	85	2	38	167	193	326	3.32e-13	67.0
MsaG003163	AT3G49930.1	37.931	116	47	5	14	108	60	171	4.25e-14	67.8
MsaG003163	AT5G43170.1	34.247	146	77	5	9	151	45	174	3.66e-13	64.7
MsaG003163	AT5G56200.1	44.444	90	29	2	40	108	344	433	6.68e-13	65.9
MsaG003163	AT4G35280.1	39.286	112	50	3	10	108	138	244	7.62e-13	65.1
MsaG003163	AT3G19580.1	34.646	127	61	5	4	108	61	187	1.38e-12	64.3
MsaG003163	AT3G19580.2	34.646	127	61	5	4	108	61	187	1.38e-12	64.3
MsaG003163	AT5G67450.1	37.363	91	38	2	37	108	96	186	1.68e-12	63.9
MsaG003163	AT5G04340.1	41.176	85	39	2	38	111	89	173	1.74e-11	60.8

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTCTTTGGTTTGGTTTCTT+TGG	0.133578	1:-52713481	None:intergenic
TTCTCTCTTGGCCAGGCTTT+GGG	0.201073	1:+52713693	MsaT003163.1:CDS
GAAGTTACTGTTCGGAAATA+TGG	0.265066	1:+52713869	MsaT003163.1:CDS
AAGCTACATGCCCAAACTTT+AGG	0.279584	1:+52713621	MsaT003163.1:CDS
TTCTTTGGTTTGGTTTCTTT+GGG	0.287528	1:-52713480	None:intergenic
ACAGGACTAAAATGTTTCTT+TGG	0.294036	1:-52713495	None:intergenic
TATTCAGCAAACCTAAAGTT+TGG	0.298957	1:-52713632	None:intergenic
ACTAAAATGTTTCTTTGGTT+TGG	0.313841	1:-52713490	None:intergenic
GAGTTTCACGGTATCTAGTT+TGG	0.314780	1:-52713598	None:intergenic
ATTCTCTCTTGGCCAGGCTT+TGG	0.331279	1:+52713692	MsaT003163.1:CDS
TGAAAAGATCGAATAGTAAG+AGG	0.344770	1:+52713802	MsaT003163.1:CDS
AGTTTCACGGTATCTAGTTT+GGG	0.350342	1:-52713597	None:intergenic
AATGTAGCACCCATGCGTTT+TGG	0.353287	1:-52713658	None:intergenic
ATTCAGCAAACCTAAAGTTT+GGG	0.384341	1:-52713631	None:intergenic
AAGAGTGGAGAATATAGATT+TGG	0.395790	1:+52713431	MsaT003163.1:CDS
CATATGAGAAGGCACAAAAT+TGG	0.403275	1:+52713720	MsaT003163.1:CDS
TGTGGTAAAGAATTCTCTCT+TGG	0.452482	1:+52713681	MsaT003163.1:CDS
CTGAATAACCCCAAAACGCA+TGG	0.471935	1:+52713648	MsaT003163.1:CDS
TTAATTTCGTAGCCATGAAA+AGG	0.477789	1:+52713397	None:intergenic
ACGCATGGGTGCTACATTTG+TGG	0.490183	1:+52713663	MsaT003163.1:CDS
GGCATGTAGCTTGAGTTTCA+CGG	0.491665	1:-52713610	None:intergenic
TCATATGTCCTCCCAAAGCC+TGG	0.497850	1:-52713704	None:intergenic
TAGTAAGAGGGTTATGTGCT+TGG	0.501643	1:+52713815	MsaT003163.1:CDS
TAAAGAATTCTCTCTTGGCC+AGG	0.519657	1:+52713686	MsaT003163.1:CDS
TTCTCTTCGTTTCAAGCCCT+AGG	0.530440	1:+52713549	MsaT003163.1:CDS
AATGACTTGAAGTTACTGTT+CGG	0.533779	1:+52713861	MsaT003163.1:CDS
GAAAAGATCGAATAGTAAGA+GGG	0.539509	1:+52713803	MsaT003163.1:CDS
TCTCTTGGCCAGGCTTTGGG+AGG	0.541746	1:+52713696	MsaT003163.1:CDS
GACTAGCTCTATGGCCACCT+AGG	0.545631	1:-52713566	None:intergenic
CACAAAATTGGCGTCAACGA+GGG	0.547186	1:+52713732	MsaT003163.1:CDS
TTTCTTTGGGATGAGAGAGT+AGG	0.548800	1:-52713467	None:intergenic
AAGGCAGAGAGACGAAAGAG+TGG	0.561042	1:+52713416	MsaT003163.1:CDS
ACTAGCTCTATGGCCACCTA+GGG	0.585030	1:-52713565	None:intergenic
TGAATAACCCCAAAACGCAT+GGG	0.610752	1:+52713649	MsaT003163.1:CDS
AACTTCAAGTCATTCTGCAA+AGG	0.613686	1:-52713852	None:intergenic
GTGGTGCACTCAAATTCCAC+AGG	0.615607	1:-52713513	None:intergenic
CTTTGGGAGGACATATGAGA+AGG	0.632803	1:+52713709	MsaT003163.1:CDS
TCTTCGTTTCAAGCCCTAGG+TGG	0.635082	1:+52713552	MsaT003163.1:CDS
CTTGAAACGAAGAGAACTTG+CGG	0.655759	1:-52713542	None:intergenic
AGAGAACTTGCGGTTGCATG+TGG	0.663988	1:-52713532	None:intergenic
GCACAAAATTGGCGTCAACG+AGG	0.669929	1:+52713731	MsaT003163.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	52713411	52713917	52713411	ID=MsaG003163
Chr1	mRNA	52713411	52713917	52713411	ID=MsaT003163.1;Parent=MsaG003163
Chr1	exon	52713411	52713917	52713411	ID=MsaT003163.1.exon1;Parent=MsaT003163.1
Chr1	CDS	52713411	52713917	52713411	ID=cds.MsaT003163.1;Parent=MsaT003163.1

Gene Sequence

>MsaT003163.1

ATGAAAAGGCAGAGAGACGAAAGAGTGGAGAATATAGATTTGGCAAATTGTCTAATCCTACTCTCTCATCCCAAAGAAACCAAACCAAAGAAACATTTTAGTCCTGTGGAATTTGAGTGCACCACATGCAACCGCAAGTTCTCTTCGTTTCAAGCCCTAGGTGGCCATAGAGCTAGTCACAAAAAGCCCAAACTAGATACCGTGAAACTCAAGCTACATGCCCAAACTTTAGGTTTGCTGAATAACCCCAAAACGCATGGGTGCTACATTTGTGGTAAAGAATTCTCTCTTGGCCAGGCTTTGGGAGGACATATGAGAAGGCACAAAATTGGCGTCAACGAGGGATTTTCTTTGGTGAAGAAAAATAAGGTTGTTGGAAAAATCCCAATATTGAAAAGATCGAATAGTAAGAGGGTTATGTGCTTGGACTTGAACTTAACACCTTTGCAGAATGACTTGAAGTTACTGTTCGGAAATATGGCACCTGAAGTTGATTCATTTTTTTGA

Protein sequence

>MsaT003163.1

MKRQRDERVENIDLANCLILLSHPKETKPKKHFSPVEFECTTCNRKFSSFQALGGHRASHKKPKLDTVKLKLHAQTLGLLNNPKTHGCYICGKEFSLGQALGGHMRRHKIGVNEGFSLVKKNKVVGKIPILKRSNSKRVMCLDLNLTPLQNDLKLLFGNMAPEVDSFF*