AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003192


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003192 MtrunA17_Chr1g0182481 98.439 897 13 1 1 896 1 897 0.0 1842
MsaG003192 MtrunA17_Chr7g0265211 53.632 468 195 6 445 892 482 947 1.79e-169 517
MsaG003192 MtrunA17_Chr7g0265211 27.933 358 222 11 27 364 19 360 1.08e-18 91.7
MsaG003192 MtrunA17_Chr1g0179841 51.641 457 200 5 456 892 347 802 7.69e-153 469
MsaG003192 MtrunA17_Chr4g0028111 39.093 463 218 9 458 862 102 558 2.15e-97 318
MsaG003192 MtrunA17_Chr2g0320451 36.750 517 262 11 253 712 226 734 4.82e-94 319
MsaG003192 MtrunA17_Chr2g0320451 53.684 190 78 4 712 892 835 1023 9.33e-54 202
MsaG003192 MtrunA17_Chr4g0025251 35.262 553 256 14 429 890 158 699 9.89e-92 305
MsaG003192 MtrunA17_Chr4g0027811 33.786 515 249 9 398 890 132 576 2.26e-85 285
MsaG003192 MtrunA17_Chr1g0205451 29.909 438 240 10 476 892 621 1012 5.10e-51 195
MsaG003192 MtrunA17_Chr7g0270101 29.327 416 231 12 494 891 417 787 9.57e-47 179
MsaG003192 MtrunA17_Chr5g0430361 28.471 425 239 10 486 892 680 1057 3.17e-46 179
MsaG003192 MtrunA17_Chr2g0316251 29.665 418 223 16 494 890 797 1164 3.80e-45 177
MsaG003192 MtrunA17_Chr3g0105291 27.778 450 261 10 444 874 587 991 2.55e-42 167
MsaG003192 MtrunA17_Chr5g0407251 25.957 470 239 15 477 891 4 419 6.98e-42 159
MsaG003192 MtrunA17_Chr1g0182221 51.449 138 67 0 241 378 389 526 1.96e-41 160
MsaG003192 MtrunA17_Chr5g0407211 25.532 470 241 15 477 891 4 419 2.24e-41 157
MsaG003192 MtrunA17_Chr1g0185491 28.471 425 241 13 487 892 840 1220 1.21e-40 162
MsaG003192 MtrunA17_Chr4g0030901 45.324 139 75 1 240 378 305 442 1.25e-37 147
MsaG003192 MtrunA17_Chr3g0134821 27.249 389 227 11 494 866 459 807 4.48e-37 150
MsaG003192 MtrunA17_Chr7g0222931 48.485 132 68 0 239 370 390 521 1.40e-34 139
MsaG003192 MtrunA17_Chr3g0134811 26.857 350 195 10 550 887 491 791 1.27e-33 139
MsaG003192 MtrunA17_Chr3g0134851 24.306 432 198 11 497 888 128 470 7.17e-28 118
MsaG003192 MtrunA17_Chr2g0320431 36.697 109 64 1 253 356 23 131 3.60e-16 80.1
MsaG003192 MtrunA17_Chr7g0259981 24.915 293 166 10 640 896 22 296 1.93e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003192 AT2G37520.1 54.374 903 313 16 1 892 1 815 0.0 948
MsaG003192 AT3G53680.2 51.366 915 340 17 1 892 1 833 0.0 880
MsaG003192 AT3G53680.1 51.313 914 340 17 1 892 1 831 0.0 880
MsaG003192 AT2G36720.1 39.917 724 359 13 246 894 253 975 1.33e-160 496
MsaG003192 AT2G36720.2 39.917 724 359 13 246 894 253 975 1.33e-160 496
MsaG003192 AT2G27980.1 36.103 698 388 10 246 894 371 1059 4.28e-142 449
MsaG003192 AT4G14920.3 27.854 438 236 12 482 894 603 985 8.05e-49 188
MsaG003192 AT4G14920.2 27.854 438 236 12 482 894 603 985 8.56e-49 188
MsaG003192 AT4G14920.1 27.854 438 236 12 482 894 603 985 8.56e-49 188
MsaG003192 AT5G58610.4 30.508 413 233 11 495 892 404 777 1.93e-45 177
MsaG003192 AT5G58610.7 30.508 413 233 11 495 892 626 999 2.56e-45 177
MsaG003192 AT5G58610.8 30.508 413 233 11 495 892 635 1008 2.74e-45 177
MsaG003192 AT5G58610.2 30.508 413 233 11 495 892 635 1008 2.74e-45 177
MsaG003192 AT5G58610.3 30.508 413 233 11 495 892 635 1008 2.77e-45 177
MsaG003192 AT5G58610.5 30.508 413 233 11 495 892 626 999 3.03e-45 177
MsaG003192 AT3G14980.6 29.384 422 231 13 489 892 651 1023 7.82e-44 172
MsaG003192 AT3G14980.1 29.384 422 231 13 489 892 651 1023 7.82e-44 172
MsaG003192 AT3G14980.2 29.384 422 231 13 489 892 651 1023 7.82e-44 172
MsaG003192 AT3G14980.5 29.384 422 231 13 489 892 606 978 8.23e-44 172
MsaG003192 AT3G14980.3 29.117 419 236 12 489 892 651 1023 1.32e-43 172
MsaG003192 AT1G05380.3 29.691 421 236 10 486 890 547 923 2.07e-42 168
MsaG003192 AT1G05380.1 29.691 421 236 10 486 890 547 923 2.07e-42 168
MsaG003192 AT1G05380.2 29.691 421 236 10 486 890 547 923 2.07e-42 168
MsaG003192 AT5G58610.1 29.540 413 211 12 495 892 626 973 7.07e-40 160
MsaG003192 AT5G58610.6 29.540 413 211 12 495 892 626 973 7.40e-40 160
MsaG003192 AT5G59830.3 49.275 138 69 1 241 378 278 414 3.15e-39 151
MsaG003192 AT5G59830.1 49.275 138 69 1 241 378 278 414 3.15e-39 151
MsaG003192 AT5G59830.2 49.275 138 69 1 241 378 278 414 3.15e-39 151
MsaG003192 AT5G36740.5 28.605 423 237 13 486 890 572 947 4.38e-39 157
MsaG003192 AT5G36740.1 28.605 423 237 13 486 890 572 947 4.38e-39 157
MsaG003192 AT5G36740.4 27.650 434 241 15 486 892 419 806 4.76e-37 151
MsaG003192 AT5G58610.10 29.722 360 200 10 495 839 635 956 1.52e-36 149
MsaG003192 AT5G58610.9 29.722 360 200 10 495 839 626 947 1.95e-36 149
MsaG003192 AT5G13660.1 49.296 142 72 0 229 370 374 515 1.73e-35 142
MsaG003192 AT5G13660.2 48.951 143 72 1 229 370 374 516 4.94e-35 141
MsaG003192 AT5G63900.1 27.660 329 169 11 554 873 257 525 6.02e-31 129
MsaG003192 AT5G36670.4 26.879 439 238 18 486 890 572 961 9.86e-31 131
MsaG003192 AT5G36670.5 26.879 439 238 18 486 890 572 961 9.86e-31 131
MsaG003192 AT5G36670.2 27.446 368 203 13 486 835 572 893 7.84e-30 127
MsaG003192 AT5G36740.2 27.446 368 203 13 486 835 572 893 7.84e-30 127
MsaG003192 AT5G36740.3 27.446 368 203 13 486 835 572 893 7.84e-30 127
MsaG003192 AT5G36670.3 26.000 450 242 19 486 892 419 820 1.17e-28 124
MsaG003192 AT5G36670.1 26.116 448 240 19 486 890 572 971 1.58e-28 124
MsaG003192 AT5G58610.11 29.193 322 175 10 495 801 626 909 3.12e-27 119
MsaG003192 AT3G14980.4 26.444 329 182 11 489 802 651 934 7.42e-25 112

Find 226 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGGAATATGTGATTATT+TGG 0.150813 1:+53255499 None:intergenic
TTGTGCAGGCGAAATATTTC+TGG 0.184888 1:-53248156 MsaT003192.1:intron
AATCTGCTCTTTACCTTTCC+AGG 0.198769 1:+53255789 None:intergenic
CTGATTCCTGTTATGGTATA+TGG 0.204303 1:-53248780 MsaT003192.1:CDS
TCACGGGGATGATGATTATT+TGG 0.226715 1:-53256012 MsaT003192.1:CDS
GCAAATGATGATTATAATAG+TGG 0.236158 1:-53255990 MsaT003192.1:CDS
GTTGAGCTCGATGGGATTAT+TGG 0.243862 1:-53255703 MsaT003192.1:CDS
TCATGTATAATGCTATAAAT+TGG 0.250757 1:+53255466 None:intergenic
AATCACATATTCCTAGAAAA+TGG 0.255410 1:-53255493 MsaT003192.1:CDS
TAGTATCTGCCGGGCTTCTT+AGG 0.257711 1:-53248001 MsaT003192.1:CDS
TCCATTTGGACTAAGAAATT+AGG 0.275286 1:-53247677 MsaT003192.1:CDS
GAAGATTCGGAGTTGTATTC+TGG 0.287560 1:-53255927 MsaT003192.1:CDS
AATATTTCTGGCCAAGAATT+CGG 0.299340 1:-53248144 MsaT003192.1:CDS
CTGCACCTCTTTAAGATGTT+TGG 0.299842 1:+53247437 None:intergenic
CATCCACCCACTTCATATTC+TGG 0.300717 1:+53250550 None:intergenic
ATATTTCTGGCCAAGAATTC+GGG 0.311304 1:-53248143 MsaT003192.1:CDS
GAACCTTCTTGCTGCTTTGT+AGG 0.312071 1:+53254216 None:intergenic
TATGGGAATGGCAGTGGATA+TGG 0.328598 1:-53256050 MsaT003192.1:CDS
ACATTATTGGGGAAGGCGTT+TGG 0.335634 1:+53255870 None:intergenic
TATCAACGAGGGATCCTTCC+AGG 0.341212 1:-53255383 MsaT003192.1:CDS
ATTTCAATTGCAGCCTGCTT+GGG 0.355527 1:-53250685 MsaT003192.1:intron
TATTTCAATTGCAGCCTGCT+TGG 0.361264 1:-53250686 MsaT003192.1:intron
GCCTAATTTCTTAGTCCAAA+TGG 0.376041 1:+53247676 None:intergenic
ACGAGGGATCCTTCCAGGTT+TGG 0.376818 1:-53255378 MsaT003192.1:CDS
GGAGTTGTATTCTGGCAATA+TGG 0.378266 1:-53255919 MsaT003192.1:CDS
CGGTATAGCCAGTAGGTGTT+TGG 0.378831 1:+53256102 None:intergenic
CAGGGGATGCAGAGTCCATT+TGG 0.382960 1:-53247691 MsaT003192.1:CDS
TGGGTGGATGCGTTGTTTGC+AGG 0.387332 1:-53250537 MsaT003192.1:intron
GATCCCATCGTTGCAATATC+TGG 0.389667 1:-53248810 MsaT003192.1:CDS
CGGTTGAACTAGCATGCTTC+GGG 0.390012 1:+53256180 None:intergenic
GCTTACCCATATACCATAAC+AGG 0.391501 1:+53248774 None:intergenic
TGTTCTGTTGCAGAAACATT+TGG 0.398769 1:+53256431 None:intergenic
GATGGCAGTGGCAGTGACTA+TGG 0.400420 1:-53256080 MsaT003192.1:CDS
GTATCATGTTGGTTGCTTGC+GGG 0.403484 1:-53249965 MsaT003192.1:CDS
CTCATCTGGCGTGCTGTTTG+TGG 0.404835 1:+53255432 None:intergenic
AACTACTCACGGTTGACGTC+TGG 0.405856 1:+53251258 None:intergenic
TTATCAACCGGTATCCTTGA+TGG 0.408535 1:-53255837 MsaT003192.1:CDS
GACTCTGCATCCCCTGCAGC+AGG 0.410293 1:+53247698 None:intergenic
AAGCTGGTGCTCCCTGCTGC+AGG 0.415428 1:-53247710 MsaT003192.1:CDS
TCGTGACCTGATTCCTGTTA+TGG 0.418037 1:-53248787 MsaT003192.1:CDS
CCTTGTCGGAACTAATAATC+AGG 0.420091 1:-53249731 MsaT003192.1:CDS
AAAAGTAATCTTTCGAATAC+CGG 0.420888 1:+53256160 None:intergenic
CTGCAGAACTCAGTTTCTGC+TGG 0.425684 1:-53249774 MsaT003192.1:CDS
AGTGGATATGGCTATGGATA+TGG 0.426832 1:-53256038 MsaT003192.1:CDS
TGGTAGAGAGCTCGTATGGC+AGG 0.428854 1:-53255965 MsaT003192.1:CDS
GTTGGTTGCTTGCGGGACAT+TGG 0.430834 1:-53249958 MsaT003192.1:CDS
ACATTCTTTATAACCTCATC+TGG 0.434195 1:+53255418 None:intergenic
CCGGTTGAACTAGCATGCTT+CGG 0.435129 1:+53256179 None:intergenic
AGTTCTATTGTAGTATCTGC+CGG 0.436363 1:-53248011 MsaT003192.1:CDS
AACAGTAATAATTTGTGATC+AGG 0.437855 1:-53250081 MsaT003192.1:intron
CCGAAGCATGCTAGTTCAAC+CGG 0.438023 1:-53256179 MsaT003192.1:CDS
AATTTGTGTCAGAATGATAA+AGG 0.439373 1:-53256245 MsaT003192.1:CDS
CAATTCCAACCTTGATTCCT+CGG 0.442972 1:+53256562 None:intergenic
CGTGTCAACCGTATCATGAT+TGG 0.445167 1:+53250586 None:intergenic
TTCTTTGCAATGGATGTCCT+AGG 0.446094 1:-53251040 MsaT003192.1:CDS
GTTTCCACTCATCAGCTGTC+TGG 0.451039 1:+53252015 None:intergenic
TACCATACCATCTTCCTTGT+CGG 0.451679 1:-53249745 MsaT003192.1:CDS
TTGGTTGCTTGCGGGACATT+GGG 0.451865 1:-53249957 MsaT003192.1:CDS
TTCTCTAAATGTAGAAAAGC+TGG 0.453959 1:-53247726 MsaT003192.1:CDS
AAATACAGCACAAAGTATAC+TGG 0.455013 1:-53254182 MsaT003192.1:CDS
AATTGTCACCTTTCCAAACC+TGG 0.456107 1:+53255365 None:intergenic
CATATACCATAACAGGAATC+AGG 0.457604 1:+53248781 None:intergenic
AGCAGTTTGTGTGCAAGAAT+TGG 0.459554 1:-53256606 MsaT003192.1:CDS
GTTTACCTGTTGTATGTATG+AGG 0.461715 1:+53254155 None:intergenic
ACTCACGGTATCATGAGAAC+TGG 0.465826 1:+53256310 None:intergenic
ATATGTTCCTTATGAAGATT+CGG 0.467208 1:-53255940 MsaT003192.1:CDS
GGAACTGACATCTAATGGTT+TGG 0.467552 1:-53256339 MsaT003192.1:CDS
TCACAAGATGAGTGAAGATC+AGG 0.472645 1:-53247651 MsaT003192.1:intron
TGTGGGGAACTGACATCTAA+TGG 0.474213 1:-53256344 MsaT003192.1:CDS
TAAGCCAACTCGGCACCATC+TGG 0.474427 1:+53251585 None:intergenic
ATCAAATGATGAATTGCGTT+CGG 0.474499 1:-53256465 MsaT003192.1:CDS
ACAACAAAACCACTTATCCT+TGG 0.476811 1:+53249824 None:intergenic
TGATTCCTGTTATGGTATAT+GGG 0.477661 1:-53248779 MsaT003192.1:intron
GCTCTCTACTTGTAGCTACC+AGG 0.479856 1:+53247949 None:intergenic
GATGATTACCAAACACCTAC+TGG 0.479989 1:-53256110 MsaT003192.1:CDS
GGAGGTTACAAACAAGGAAA+TGG 0.483140 1:-53251441 MsaT003192.1:CDS
CAACAAAACCACTTATCCTT+GGG 0.483162 1:+53249825 None:intergenic
GGCTATGGATATGGTTATCA+CGG 0.483376 1:-53256029 MsaT003192.1:CDS
CGTCACTATCTCCCGTAGTA+AGG 0.483399 1:+53251099 None:intergenic
ATAGCTCTCTCTTTAGCAAA+TGG 0.484963 1:-53251128 MsaT003192.1:CDS
TGTGTGCAAGAATTGGTTGA+TGG 0.485091 1:-53256599 MsaT003192.1:CDS
TTCCACTTAAAATTCTCCAT+TGG 0.486045 1:+53249661 None:intergenic
AACATCAGTGCTGGAAAAGA+TGG 0.491255 1:-53247397 MsaT003192.1:CDS
CGGAAAATACCGAGGAATCA+AGG 0.492209 1:-53256571 MsaT003192.1:CDS
GCACCATCTGGTAGGCCATT+AGG 0.495313 1:+53251597 None:intergenic
CTTCAACAAAACATCAGTGC+TGG 0.496640 1:-53247406 MsaT003192.1:CDS
GATCACAAATTATTACTGTT+CGG 0.496937 1:+53250084 None:intergenic
GTCTGGCCGCCATTCCAGCA+TGG 0.498328 1:+53251275 None:intergenic
ATTAGTTCCGACAAGGAAGA+TGG 0.499097 1:+53249738 None:intergenic
CGCCACATATATGCTTCCAA+TGG 0.499581 1:-53251167 MsaT003192.1:CDS
ATTGTTAGGTTGAGCTCGAT+GGG 0.500245 1:-53255711 MsaT003192.1:intron
TCGCAGTTTGAAGCCCATGC+TGG 0.501139 1:-53251289 MsaT003192.1:CDS
AGACAATGCCAACCACTCTC+TGG 0.504882 1:+53250649 None:intergenic
TCTTTGCAATGGATGTCCTA+GGG 0.507931 1:-53251039 MsaT003192.1:CDS
GCATGCCTCATACATACAAC+AGG 0.508258 1:-53254160 MsaT003192.1:intron
AGTGACTATGGATATAGCTA+TGG 0.509498 1:-53256068 MsaT003192.1:CDS
AGGAGCTTCCCAAGGATAAG+TGG 0.511538 1:-53249833 MsaT003192.1:CDS
CTGTGGTTGTTGTGATATAG+AGG 0.515703 1:-53251412 MsaT003192.1:intron
GCATGGGCTTCAAACTGCGA+AGG 0.518290 1:+53251292 None:intergenic
GTTTGAAGCCCATGCTGGAA+TGG 0.519222 1:-53251284 MsaT003192.1:CDS
TACAACTCCGAATCTTCATA+AGG 0.519644 1:+53255933 None:intergenic
AATTGTTAGGTTGAGCTCGA+TGG 0.521586 1:-53255712 MsaT003192.1:intron
CTGATGGTTGCACTAAGAAA+AGG 0.521651 1:-53251786 MsaT003192.1:intron
AGCATGCTGCTCAAACTCAT+AGG 0.521651 1:+53255540 None:intergenic
AGTATCATGTTGGTTGCTTG+CGG 0.523548 1:-53249966 MsaT003192.1:CDS
GGAGATTTGATTCTTTGCAA+TGG 0.524987 1:-53251050 MsaT003192.1:CDS
TCTGGCCGCCATTCCAGCAT+GGG 0.525191 1:+53251276 None:intergenic
GTGAAATATATTTATAACCC+TGG 0.528498 1:-53255807 MsaT003192.1:CDS
ATCATGAAGTGTCAATCCAT+TGG 0.529107 1:+53251151 None:intergenic
TATAGCTATGGGAATGGCAG+TGG 0.529302 1:-53256056 MsaT003192.1:CDS
ATCTGCTCTTTACCTTTCCA+GGG 0.529845 1:+53255790 None:intergenic
CCTCGCACCTCTTTCATCAC+CGG 0.530109 1:+53250609 None:intergenic
TAATCAGGAAGCATGAGGAC+AGG 0.533029 1:-53249716 MsaT003192.1:CDS
ATGTTAGCCATGCAGAGTGT+GGG 0.533335 1:-53256361 MsaT003192.1:CDS
GCTATGGATATGGTTATCAC+GGG 0.534961 1:-53256028 MsaT003192.1:CDS
AATCAGGAAGCATGAGGACA+GGG 0.536694 1:-53249715 MsaT003192.1:CDS
CATTCTCAGATTCCGTCGGT+TGG 0.537719 1:+53256381 None:intergenic
TTCCGACAAGGAAGATGGTA+TGG 0.538378 1:+53249743 None:intergenic
AATGGCAGTGGATATGGCTA+TGG 0.538700 1:-53256044 MsaT003192.1:CDS
TATGAGTTTGAGCAGCATGC+TGG 0.538811 1:-53255538 MsaT003192.1:CDS
TGCAGTGTCCCGTGTTGTGA+TGG 0.540141 1:-53256207 MsaT003192.1:CDS
AGCTGGTGCTCCCTGCTGCA+GGG 0.540416 1:-53247709 MsaT003192.1:CDS
CAATATTGCCGAGCTTCCCC+TGG 0.541449 1:-53247967 MsaT003192.1:CDS
GACAGGGGATTATGTACGTA+TGG 0.542273 1:-53249699 MsaT003192.1:CDS
TGCAGCTCCATCAAGGATAC+CGG 0.549874 1:+53255830 None:intergenic
GTTAACCAAACATCTTAAAG+AGG 0.550069 1:-53247442 MsaT003192.1:CDS
GTTCTATTGTAGTATCTGCC+GGG 0.553325 1:-53248010 MsaT003192.1:CDS
GCTGGTGCTCCCTGCTGCAG+GGG 0.553471 1:-53247708 MsaT003192.1:CDS
TCAGGGACAACGATTTGCAC+AGG 0.553644 1:-53251632 MsaT003192.1:intron
CCTACCAGATGGTGCCGAGT+TGG 0.554670 1:-53251589 MsaT003192.1:CDS
ATAGTCACTGCCACTGCCAT+CGG 0.556162 1:+53256082 None:intergenic
ATGCCTAATGGCCTACCAGA+TGG 0.557585 1:-53251600 MsaT003192.1:CDS
AAATGGTCAAAACCTTACTA+CGG 0.559162 1:-53251111 MsaT003192.1:CDS
GACGATATGTGTGCAGTATG+TGG 0.562409 1:-53251080 MsaT003192.1:CDS
GGACATTGGGCTATGTGAGT+TGG 0.565407 1:-53249944 MsaT003192.1:CDS
AAATACCGAGGAATCAAGGT+TGG 0.565993 1:-53256567 MsaT003192.1:CDS
GGCTTACTATGTCAAAGGAC+AGG 0.566342 1:-53251568 MsaT003192.1:intron
TACACTGTGTAAACCCAAGC+AGG 0.566345 1:+53250672 None:intergenic
CTAAATTGTGAAGATAATAC+CGG 0.566713 1:-53250628 MsaT003192.1:CDS
TGTAGCTACCAGGGGAAGCT+CGG 0.567254 1:+53247959 None:intergenic
GGATCCTTCCAGGTTTGGAA+AGG 0.568977 1:-53255373 MsaT003192.1:intron
CAATCATGATACGGTTGACA+CGG 0.569872 1:-53250585 MsaT003192.1:CDS
GAGACATGAATGATATCCAA+TGG 0.570210 1:-53249677 MsaT003192.1:CDS
GAGGTTATAAAGAATGTGGC+TGG 0.571005 1:-53255412 MsaT003192.1:CDS
GAGTAGTAAGTGTAGGTGCT+TGG 0.573254 1:+53251832 None:intergenic
AGTGCTGGAAAAGATGGTGC+AGG 0.576023 1:-53247391 MsaT003192.1:CDS
TTGGCTGCTGATATCATGAA+AGG 0.577561 1:+53256400 None:intergenic
CTCTCTACTTGTAGCTACCA+GGG 0.577610 1:+53247950 None:intergenic
ATTTCACTGCAGCTCCATCA+AGG 0.579262 1:+53255823 None:intergenic
GTGACTATGGATATAGCTAT+GGG 0.582699 1:-53256067 MsaT003192.1:CDS
AATGGTCAAAACCTTACTAC+GGG 0.583818 1:-53251110 MsaT003192.1:CDS
CTCGATGGGATTATTGGTGA+TGG 0.584397 1:-53255697 MsaT003192.1:CDS
GGTAGAGAGCTCGTATGGCA+GGG 0.584644 1:-53255964 MsaT003192.1:CDS
CCTGATTATTAGTTCCGACA+AGG 0.584730 1:+53249731 None:intergenic
GATAATACCGGTGATGAAAG+AGG 0.586090 1:-53250616 MsaT003192.1:CDS
CGGGATTTCCATCACAACAC+GGG 0.586430 1:+53256199 None:intergenic
GTCACCTTTCCAAACCTGGA+AGG 0.586888 1:+53255369 None:intergenic
ACAGTGTACCAGAGAGTGGT+TGG 0.587119 1:-53250657 MsaT003192.1:CDS
TATGGATATAGCTATGGGAA+TGG 0.587377 1:-53256062 MsaT003192.1:CDS
TCAGTTCCCCACACTCTGCA+TGG 0.587821 1:+53256354 None:intergenic
CGACCAGATATTGCAACGAT+GGG 0.591304 1:+53248807 None:intergenic
TCTCCTACAAAGCAGCAAGA+AGG 0.591457 1:-53254219 MsaT003192.1:CDS
GTGCGAGGCCAATCATGATA+CGG 0.593336 1:-53250594 MsaT003192.1:CDS
GGGTTGGTAGAGAGCTCGTA+TGG 0.593441 1:-53255969 MsaT003192.1:CDS
TGAGTGATGAAGCTGGTGTT+CGG 0.593660 1:-53256292 MsaT003192.1:CDS
CGACTGCAATCGAATATATG+TGG 0.593667 1:-53249799 MsaT003192.1:CDS
CATGGGCTTCAAACTGCGAA+GGG 0.593763 1:+53251293 None:intergenic
ATGTGTGCAGTATGTGGAGA+TGG 0.595554 1:-53251074 MsaT003192.1:CDS
CAAGGAAATGGTATAGTCTG+TGG 0.597162 1:-53251429 MsaT003192.1:CDS
AGAATTGGTTGATGGAAAGA+CGG 0.598733 1:-53256591 MsaT003192.1:CDS
AGCACCTACACTTACTACTC+AGG 0.600275 1:-53251829 MsaT003192.1:CDS
ATCCATTGGAAGCATATATG+TGG 0.600631 1:+53251165 None:intergenic
TGATATCAGCAGCCAACCGA+CGG 0.606482 1:-53256393 MsaT003192.1:CDS
TCGCACACGCAAAGATGAGA+AGG 0.607738 1:+53252067 None:intergenic
TTTCAGTATCAGCAACACAT+TGG 0.609213 1:+53256525 None:intergenic
GGGGAAGCTCGGCAATATTG+CGG 0.612139 1:+53247970 None:intergenic
AACACCAGCTTCATCACTCA+CGG 0.612359 1:+53256295 None:intergenic
ATATATTTATAACCCTGGAA+AGG 0.612693 1:-53255802 MsaT003192.1:intron
TCACCTGCATGAAAAGCCCT+AGG 0.612940 1:+53251023 None:intergenic
TTTACTACAGGAGCTTCCCA+AGG 0.613778 1:-53249841 MsaT003192.1:intron
TGAAGCCCATGCTGGAATGG+CGG 0.615089 1:-53251281 MsaT003192.1:CDS
GAACCAGAATATGAAGTGGG+TGG 0.615638 1:-53250553 MsaT003192.1:CDS
ACGACCAGATATTGCAACGA+TGG 0.617395 1:+53248806 None:intergenic
TAAAGAACCAGAATATGAAG+TGG 0.620957 1:-53250557 MsaT003192.1:CDS
TGATGATTATAATAGTGGGT+TGG 0.621646 1:-53255985 MsaT003192.1:CDS
CCGCAGAAGAGAAGTGCTGA+TGG 0.622167 1:-53251802 MsaT003192.1:CDS
GTAGAGAGCTCGTATGGCAG+GGG 0.622368 1:-53255963 MsaT003192.1:CDS
GAGTTGGCTTACTATGTCAA+AGG 0.622870 1:-53251573 MsaT003192.1:CDS
TATTTCTGGCCAAGAATTCG+GGG 0.624320 1:-53248142 MsaT003192.1:CDS
CACAAACAGCACGCCAGATG+AGG 0.626750 1:-53255431 MsaT003192.1:CDS
AATCATGATACGGTTGACAC+GGG 0.627097 1:-53250584 MsaT003192.1:CDS
TTACTTGGAGGTTACAAACA+AGG 0.627097 1:-53251447 MsaT003192.1:CDS
CTGCCATCGGTATAGCCAGT+AGG 0.629361 1:+53256095 None:intergenic
TGTTAGCCATGCAGAGTGTG+GGG 0.629545 1:-53256360 MsaT003192.1:CDS
CCAACTCGGCACCATCTGGT+AGG 0.631639 1:+53251589 None:intergenic
CTAACATTCTCAGATTCCGT+CGG 0.631916 1:+53256377 None:intergenic
ACTCTGCATCCCCTGCAGCA+GGG 0.632470 1:+53247699 None:intergenic
CAAATGATGATTATAATAGT+GGG 0.633509 1:-53255989 MsaT003192.1:CDS
GCAGCAGCTCGTGAAAGTAA+CGG 0.635905 1:+53249615 None:intergenic
ACTAATAATCAGGAAGCATG+AGG 0.636804 1:-53249721 MsaT003192.1:CDS
AAAGAACCAGAATATGAAGT+GGG 0.639564 1:-53250556 MsaT003192.1:CDS
AATGTTAGCCATGCAGAGTG+TGG 0.640010 1:-53256362 MsaT003192.1:CDS
TCGGGATTTCCATCACAACA+CGG 0.640467 1:+53256198 None:intergenic
ACACCTACTGGCTATACCGA+TGG 0.641142 1:-53256098 MsaT003192.1:CDS
TGTGCAGTATGTGGAGATGG+AGG 0.641733 1:-53251071 MsaT003192.1:CDS
GCTACAAGTAGAGAGCATCA+AGG 0.644661 1:-53247942 MsaT003192.1:CDS
AGATGAGGTTATAAAGAATG+TGG 0.645405 1:-53255416 MsaT003192.1:CDS
TATACCTGAGTAGTAAGTGT+AGG 0.646579 1:+53251825 None:intergenic
ACTGGCTATACCGATGGCAG+TGG 0.650962 1:-53256092 MsaT003192.1:CDS
GATGGGATTATTGGTGATGG+TGG 0.652514 1:-53255694 MsaT003192.1:CDS
TGAACCAGACAGCTGATGAG+TGG 0.653688 1:-53252019 MsaT003192.1:CDS
TTACACAGTGTACCAGAGAG+TGG 0.659593 1:-53250661 MsaT003192.1:CDS
CCATCAGCACTTCTCTTCTG+CGG 0.662514 1:+53251802 None:intergenic
TTTGACATAGTAAGCCAACT+CGG 0.664130 1:+53251575 None:intergenic
CATTGGAAGCATATATGTGG+CGG 0.666351 1:+53251168 None:intergenic
ATTTCTGGCCAAGAATTCGG+GGG 0.674461 1:-53248141 MsaT003192.1:CDS
ATCAGGAAGCATGAGGACAG+GGG 0.674473 1:-53249714 MsaT003192.1:CDS
GCTGGTTCATCTATCAACGA+GGG 0.690296 1:-53255394 MsaT003192.1:CDS
TCTCTACTTGTAGCTACCAG+GGG 0.693635 1:+53247951 None:intergenic
GATACCGTGAGTGATGAAGC+TGG 0.694052 1:-53256299 MsaT003192.1:CDS
TGTGAGAAGGAGTATCATGT+TGG 0.706727 1:-53249976 MsaT003192.1:CDS
TGGAAAGACGGAAAATACCG+AGG 0.709142 1:-53256579 MsaT003192.1:CDS
CTATGGATATGGTTATCACG+GGG 0.709587 1:-53256027 MsaT003192.1:CDS
GGCTGGTTCATCTATCAACG+AGG 0.715047 1:-53255395 MsaT003192.1:CDS
GGTGATGGTGGATATCTGTG+TGG 0.715376 1:-53255682 MsaT003192.1:CDS
CCGGTGATGAAAGAGGTGCG+AGG 0.773077 1:-53250609 MsaT003192.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 53247380 53256639 53247380 ID=MsaG003192
Chr1 mRNA 53247380 53256639 53247380 ID=MsaT003192.1;Parent=MsaG003192
Chr1 exon 53247380 53247463 53247380 ID=MsaT003192.1.exon19;Parent=MsaT003192.1
Chr1 CDS 53247380 53247463 53247380 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53247652 53247792 53247652 ID=MsaT003192.1.exon18;Parent=MsaT003192.1
Chr1 CDS 53247652 53247792 53247652 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53247938 53248031 53247938 ID=MsaT003192.1.exon17;Parent=MsaT003192.1
Chr1 CDS 53247938 53248031 53247938 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53248114 53248170 53248114 ID=MsaT003192.1.exon16;Parent=MsaT003192.1
Chr1 CDS 53248114 53248170 53248114 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53248780 53248841 53248780 ID=MsaT003192.1.exon15;Parent=MsaT003192.1
Chr1 CDS 53248780 53248841 53248780 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53249605 53249853 53249605 ID=MsaT003192.1.exon14;Parent=MsaT003192.1
Chr1 CDS 53249605 53249853 53249605 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53249942 53249998 53249942 ID=MsaT003192.1.exon13;Parent=MsaT003192.1
Chr1 CDS 53249942 53249998 53249942 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53250082 53250139 53250082 ID=MsaT003192.1.exon12;Parent=MsaT003192.1
Chr1 CDS 53250082 53250139 53250082 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53250538 53250694 53250538 ID=MsaT003192.1.exon11;Parent=MsaT003192.1
Chr1 CDS 53250538 53250694 53250538 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53251027 53251193 53251027 ID=MsaT003192.1.exon10;Parent=MsaT003192.1
Chr1 CDS 53251027 53251193 53251027 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53251268 53251320 53251268 ID=MsaT003192.1.exon9;Parent=MsaT003192.1
Chr1 CDS 53251268 53251320 53251268 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53251413 53251472 53251413 ID=MsaT003192.1.exon8;Parent=MsaT003192.1
Chr1 CDS 53251413 53251472 53251413 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53251569 53251650 53251569 ID=MsaT003192.1.exon7;Parent=MsaT003192.1
Chr1 CDS 53251569 53251650 53251569 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53251787 53251855 53251787 ID=MsaT003192.1.exon6;Parent=MsaT003192.1
Chr1 CDS 53251787 53251855 53251787 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53252002 53252112 53252002 ID=MsaT003192.1.exon5;Parent=MsaT003192.1
Chr1 CDS 53252002 53252112 53252002 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53254161 53254245 53254161 ID=MsaT003192.1.exon4;Parent=MsaT003192.1
Chr1 CDS 53254161 53254245 53254161 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53255374 53255572 53255374 ID=MsaT003192.1.exon3;Parent=MsaT003192.1
Chr1 CDS 53255374 53255572 53255374 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53255657 53255725 53255657 ID=MsaT003192.1.exon2;Parent=MsaT003192.1
Chr1 CDS 53255657 53255725 53255657 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1 exon 53255803 53256639 53255803 ID=MsaT003192.1.exon1;Parent=MsaT003192.1
Chr1 CDS 53255803 53256639 53255803 ID=cds.MsaT003192.1;Parent=MsaT003192.1
Gene Sequence

>MsaT003192.1

ATGGGAGAAGAAGCAGTTTGTGTGCAAGAATTGGTTGATGGAAAGACGGAAAATACCGAGGAATCAAGGTTGGAATTGAAACGTGATTATAACCAATGTGTTGCTGATACTGAAACAAATGTTCCGCCTAATAAAAAACAAGCTAAAGAAGTATCAAATGATGAATTGCGTTCGGAAGTTACAAATCCAAATGTTTCTGCAACAGAACATGCACAAACCTTTCATGATATCAGCAGCCAACCGACGGAATCTGAGAATGTTAGCCATGCAGAGTGTGGGGAACTGACATCTAATGGTTTGGAGAATTCCAGTTCTCATGATACCGTGAGTGATGAAGCTGGTGTTCGGAATAATGATAATGATAATATTAATAATTTGTGTCAGAATGATAAAGGTACGAGTAGTAACGATGCAGTGTCCCGTGTTGTGATGGAAATCCCGAAGCATGCTAGTTCAACCGGTATTCGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGATTATGATGATTACCAAACACCTACTGGCTATACCGATGGCAGTGGCAGTGACTATGGATATAGCTATGGGAATGGCAGTGGATATGGCTATGGATATGGTTATCACGGGGATGATGATTATTTGGCAAATGATGATTATAATAGTGGGTTGGTAGAGAGCTCGTATGGCAGGGGATATGTTCCTTATGAAGATTCGGAGTTGTATTCTGGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTTCCAAACGCCTTCCCCAATAATGTGAAAAAACTATTATCAACCGGTATCCTTGATGGAGCTGCAGTGAAATATATTTATAACCCTGGAAAGGTTGAGCTCGATGGGATTATTGGTGATGGTGGATATCTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATACATGAAATAAAAACTGCCACAAACAGCACGCCAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTATCAACGAGGGATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAGCAAGAAGGTTCCAACTCAAAAAAAATACAGCACAAAGTATACTGGCATGCCTCATACATACAACAGTCAATCTATAGAAAGTGCGAGCTCCTTCTCATCTTTGCGTGTGCGAAATCATTTTGAGCAGCAAATGTATGTGAACCAGACAGCTGATGAGTGGAAACGAGTCGTAAAGAAACCAAGCACCTACACTTACTACTCAGGTATACCGCAGAAGAGAAGTGCTGATGGTTGCACTAAGAAAAGGGACAACGATTTGCACAGGTTACTTTTTATGCCTAATGGCCTACCAGATGGTGCCGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCGCAGTTTGAAGCCCATGCTGGAATGGCGGCCAGACGTCAACCTTACCGCCACATATATGCTTCCAATGGATTGACACTTCATGATATAGCTCTCTCTTTAGCAAATGGTCAAAACCTTACTACGGGAGATAGTGACGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACACAGTGTACCAGAGAGTGGTTGGCATTGTCTAAATTGTGAAGATAATACCGGTGATGAAAGAGGTGCGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAGAACCAGAATATGAAGTGGGTGGATGCGTTGTTTGCAGGGCAAATGATTTCAGTGTTGATAAATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGTGACGACTGCAATCGAATATATGTGGCTCTGCAGAACTCAGTTTCTGCTGGAGCAGATACCATACCATCTTCCTTGTCGGAACTAATAATCAGGAAGCATGAGGACAGGGGATTATGTACGTATGGAGACATGAATGATATCCAATGGAGAATTTTAAGTGGAAAAAGTCGTTATGCAGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGCTTTGATCCCATCGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTATATGGGCGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATCGTTTTAATTGTGAATTCTATTGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCCGCAATATTGCCGAGCTTCCCCTGGTAGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGCGCTATTCTCTTGCATCGAGAAGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCCATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTAACCAAACATCTTAAAGAGGTGCAGCTCACCCTCTTCAACAAAACATCAGTGCTGGAAAAGATGGTGCAGGCGACAGAATGA

Protein sequence

>MsaT003192.1

MGEEAVCVQELVDGKTENTEESRLELKRDYNQCVADTETNVPPNKKQAKEVSNDELRSEVTNPNVSATEHAQTFHDISSQPTESENVSHAECGELTSNGLENSSSHDTVSDEAGVRNNDNDNINNLCQNDKGTSSNDAVSRVVMEIPKHASSTGIRKITFKFSKKKEDYDDYQTPTGYTDGSGSDYGYSYGNGSGYGYGYGYHGDDDYLANDDYNSGLVESSYGRGYVPYEDSELYSGNMELKMSKKVVPNAFPNNVKKLLSTGILDGAAVKYIYNPGKVELDGIIGDGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTATNSTPDEVIKNVAGSSINEGSFQVWKESLLQSSKKVPTQKKYSTKYTGMPHTYNSQSIESASSFSSLRVRNHFEQQMYVNQTADEWKRVVKKPSTYTYYSGIPQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYASNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLHSVPESGWHCLNCEDNTGDERGARPIMIRLTRVDKEPEYEVGGCVVCRANDFSVDKFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHEDRGLCTYGDMNDIQWRILSGKSRYAEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNIAELPLVATSREHQGKGYFQALFSCIEKLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLTKHLKEVQLTLFNKTSVLEKMVQATE*