AlfalfaGEDB | MsaG003192

M. sativa ssp. caerulea / MsaG003192

KEGG: -
GO: -
PFAM: PF16135.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003192	XP_013468340.1	98.439	897	13	1	1	896	1	897	0.0	1842

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003192	sp\|F4IXE7\|IDM1_ARATH	29.384	422	231	13	489	892	651	1023	7.70e-43	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003192	tr\|G7ZZK5\|G7ZZK5_MEDTR	98.439	897	13	1	1	896	1	897	0.0	1842

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003192	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG003192	0.802400	9.592578e-49	1.369533e-46
MsaG000071	MsaG003192	0.815779	1.344916e-51	2.651605e-49
MsaG000107	MsaG003192	0.806120	1.626006e-49	2.530513e-47
MsaG000115	MsaG003192	0.809396	3.297767e-50	5.550014e-48
MsaG000180	MsaG003192	0.815172	1.832752e-51	3.558289e-49
MsaG000190	MsaG003192	0.846621	3.645639e-59	1.762630e-56
MsaG000206	MsaG003192	0.802245	1.032464e-48	1.468717e-46
MsaG000236	MsaG003192	0.892955	2.192467e-74	7.559590e-71
MsaG000242	MsaG003192	0.809149	3.722484e-50	6.227781e-48
MsaG000250	MsaG003192	0.860641	3.528345e-63	2.811546e-60

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003192	MtrunA17_Chr1g0182481	98.439	897	13	1	1	896	1	897	0.0	1842
MsaG003192	MtrunA17_Chr7g0265211	53.632	468	195	6	445	892	482	947	1.79e-169	517
MsaG003192	MtrunA17_Chr7g0265211	27.933	358	222	11	27	364	19	360	1.08e-18	91.7
MsaG003192	MtrunA17_Chr1g0179841	51.641	457	200	5	456	892	347	802	7.69e-153	469
MsaG003192	MtrunA17_Chr4g0028111	39.093	463	218	9	458	862	102	558	2.15e-97	318
MsaG003192	MtrunA17_Chr2g0320451	36.750	517	262	11	253	712	226	734	4.82e-94	319
MsaG003192	MtrunA17_Chr2g0320451	53.684	190	78	4	712	892	835	1023	9.33e-54	202
MsaG003192	MtrunA17_Chr4g0025251	35.262	553	256	14	429	890	158	699	9.89e-92	305
MsaG003192	MtrunA17_Chr4g0027811	33.786	515	249	9	398	890	132	576	2.26e-85	285
MsaG003192	MtrunA17_Chr1g0205451	29.909	438	240	10	476	892	621	1012	5.10e-51	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003192	AT2G37520.1	54.374	903	313	16	1	892	1	815	0.0	948
MsaG003192	AT3G53680.2	51.366	915	340	17	1	892	1	833	0.0	880
MsaG003192	AT3G53680.1	51.313	914	340	17	1	892	1	831	0.0	880
MsaG003192	AT2G36720.1	39.917	724	359	13	246	894	253	975	1.33e-160	496
MsaG003192	AT2G36720.2	39.917	724	359	13	246	894	253	975	1.33e-160	496
MsaG003192	AT2G27980.1	36.103	698	388	10	246	894	371	1059	4.28e-142	449
MsaG003192	AT4G14920.3	27.854	438	236	12	482	894	603	985	8.05e-49	188
MsaG003192	AT4G14920.2	27.854	438	236	12	482	894	603	985	8.56e-49	188
MsaG003192	AT4G14920.1	27.854	438	236	12	482	894	603	985	8.56e-49	188
MsaG003192	AT5G58610.4	30.508	413	233	11	495	892	404	777	1.93e-45	177

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Find 226 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAATCTTTCGAATAC+CGG	0.420888	1:+53256160	None:intergenic
AAAGAACCAGAATATGAAGT+GGG	0.639564	1:-53250556	MsaT003192.1:CDS
AAATACAGCACAAAGTATAC+TGG	0.455013	1:-53254182	MsaT003192.1:CDS
AAATACCGAGGAATCAAGGT+TGG	0.565993	1:-53256567	MsaT003192.1:CDS
AAATGGTCAAAACCTTACTA+CGG	0.559162	1:-53251111	MsaT003192.1:CDS
AACACCAGCTTCATCACTCA+CGG	0.612359	1:+53256295	None:intergenic
AACAGTAATAATTTGTGATC+AGG	0.437855	1:-53250081	MsaT003192.1:intron
AACATCAGTGCTGGAAAAGA+TGG	0.491255	1:-53247397	MsaT003192.1:CDS
AACTACTCACGGTTGACGTC+TGG	0.405856	1:+53251258	None:intergenic
AAGCTGGTGCTCCCTGCTGC+AGG	0.415428	1:-53247710	MsaT003192.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	53247380	53256639	53247380	ID=MsaG003192
Chr1	mRNA	53247380	53256639	53247380	ID=MsaT003192.1;Parent=MsaG003192
Chr1	exon	53247380	53247463	53247380	ID=MsaT003192.1.exon19;Parent=MsaT003192.1
Chr1	CDS	53247380	53247463	53247380	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53247652	53247792	53247652	ID=MsaT003192.1.exon18;Parent=MsaT003192.1
Chr1	CDS	53247652	53247792	53247652	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53247938	53248031	53247938	ID=MsaT003192.1.exon17;Parent=MsaT003192.1
Chr1	CDS	53247938	53248031	53247938	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53248114	53248170	53248114	ID=MsaT003192.1.exon16;Parent=MsaT003192.1
Chr1	CDS	53248114	53248170	53248114	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53248780	53248841	53248780	ID=MsaT003192.1.exon15;Parent=MsaT003192.1
Chr1	CDS	53248780	53248841	53248780	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53249605	53249853	53249605	ID=MsaT003192.1.exon14;Parent=MsaT003192.1
Chr1	CDS	53249605	53249853	53249605	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53249942	53249998	53249942	ID=MsaT003192.1.exon13;Parent=MsaT003192.1
Chr1	CDS	53249942	53249998	53249942	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53250082	53250139	53250082	ID=MsaT003192.1.exon12;Parent=MsaT003192.1
Chr1	CDS	53250082	53250139	53250082	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53250538	53250694	53250538	ID=MsaT003192.1.exon11;Parent=MsaT003192.1
Chr1	CDS	53250538	53250694	53250538	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53251027	53251193	53251027	ID=MsaT003192.1.exon10;Parent=MsaT003192.1
Chr1	CDS	53251027	53251193	53251027	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53251268	53251320	53251268	ID=MsaT003192.1.exon9;Parent=MsaT003192.1
Chr1	CDS	53251268	53251320	53251268	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53251413	53251472	53251413	ID=MsaT003192.1.exon8;Parent=MsaT003192.1
Chr1	CDS	53251413	53251472	53251413	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53251569	53251650	53251569	ID=MsaT003192.1.exon7;Parent=MsaT003192.1
Chr1	CDS	53251569	53251650	53251569	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53251787	53251855	53251787	ID=MsaT003192.1.exon6;Parent=MsaT003192.1
Chr1	CDS	53251787	53251855	53251787	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53252002	53252112	53252002	ID=MsaT003192.1.exon5;Parent=MsaT003192.1
Chr1	CDS	53252002	53252112	53252002	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53254161	53254245	53254161	ID=MsaT003192.1.exon4;Parent=MsaT003192.1
Chr1	CDS	53254161	53254245	53254161	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53255374	53255572	53255374	ID=MsaT003192.1.exon3;Parent=MsaT003192.1
Chr1	CDS	53255374	53255572	53255374	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53255657	53255725	53255657	ID=MsaT003192.1.exon2;Parent=MsaT003192.1
Chr1	CDS	53255657	53255725	53255657	ID=cds.MsaT003192.1;Parent=MsaT003192.1
Chr1	exon	53255803	53256639	53255803	ID=MsaT003192.1.exon1;Parent=MsaT003192.1
Chr1	CDS	53255803	53256639	53255803	ID=cds.MsaT003192.1;Parent=MsaT003192.1

Gene Sequence

>MsaT003192.1

ATGGGAGAAGAAGCAGTTTGTGTGCAAGAATTGGTTGATGGAAAGACGGAAAATACCGAGGAATCAAGGTTGGAATTGAAACGTGATTATAACCAATGTGTTGCTGATACTGAAACAAATGTTCCGCCTAATAAAAAACAAGCTAAAGAAGTATCAAATGATGAATTGCGTTCGGAAGTTACAAATCCAAATGTTTCTGCAACAGAACATGCACAAACCTTTCATGATATCAGCAGCCAACCGACGGAATCTGAGAATGTTAGCCATGCAGAGTGTGGGGAACTGACATCTAATGGTTTGGAGAATTCCAGTTCTCATGATACCGTGAGTGATGAAGCTGGTGTTCGGAATAATGATAATGATAATATTAATAATTTGTGTCAGAATGATAAAGGTACGAGTAGTAACGATGCAGTGTCCCGTGTTGTGATGGAAATCCCGAAGCATGCTAGTTCAACCGGTATTCGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGATTATGATGATTACCAAACACCTACTGGCTATACCGATGGCAGTGGCAGTGACTATGGATATAGCTATGGGAATGGCAGTGGATATGGCTATGGATATGGTTATCACGGGGATGATGATTATTTGGCAAATGATGATTATAATAGTGGGTTGGTAGAGAGCTCGTATGGCAGGGGATATGTTCCTTATGAAGATTCGGAGTTGTATTCTGGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTTCCAAACGCCTTCCCCAATAATGTGAAAAAACTATTATCAACCGGTATCCTTGATGGAGCTGCAGTGAAATATATTTATAACCCTGGAAAGGTTGAGCTCGATGGGATTATTGGTGATGGTGGATATCTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATACATGAAATAAAAACTGCCACAAACAGCACGCCAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTATCAACGAGGGATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAGCAAGAAGGTTCCAACTCAAAAAAAATACAGCACAAAGTATACTGGCATGCCTCATACATACAACAGTCAATCTATAGAAAGTGCGAGCTCCTTCTCATCTTTGCGTGTGCGAAATCATTTTGAGCAGCAAATGTATGTGAACCAGACAGCTGATGAGTGGAAACGAGTCGTAAAGAAACCAAGCACCTACACTTACTACTCAGGTATACCGCAGAAGAGAAGTGCTGATGGTTGCACTAAGAAAAGGGACAACGATTTGCACAGGTTACTTTTTATGCCTAATGGCCTACCAGATGGTGCCGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCGCAGTTTGAAGCCCATGCTGGAATGGCGGCCAGACGTCAACCTTACCGCCACATATATGCTTCCAATGGATTGACACTTCATGATATAGCTCTCTCTTTAGCAAATGGTCAAAACCTTACTACGGGAGATAGTGACGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACACAGTGTACCAGAGAGTGGTTGGCATTGTCTAAATTGTGAAGATAATACCGGTGATGAAAGAGGTGCGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAGAACCAGAATATGAAGTGGGTGGATGCGTTGTTTGCAGGGCAAATGATTTCAGTGTTGATAAATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGTGACGACTGCAATCGAATATATGTGGCTCTGCAGAACTCAGTTTCTGCTGGAGCAGATACCATACCATCTTCCTTGTCGGAACTAATAATCAGGAAGCATGAGGACAGGGGATTATGTACGTATGGAGACATGAATGATATCCAATGGAGAATTTTAAGTGGAAAAAGTCGTTATGCAGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGCTTTGATCCCATCGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTATATGGGCGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATCGTTTTAATTGTGAATTCTATTGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCCGCAATATTGCCGAGCTTCCCCTGGTAGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGCGCTATTCTCTTGCATCGAGAAGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCCATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTAACCAAACATCTTAAAGAGGTGCAGCTCACCCTCTTCAACAAAACATCAGTGCTGGAAAAGATGGTGCAGGCGACAGAATGA

Protein sequence

>MsaT003192.1

MGEEAVCVQELVDGKTENTEESRLELKRDYNQCVADTETNVPPNKKQAKEVSNDELRSEVTNPNVSATEHAQTFHDISSQPTESENVSHAECGELTSNGLENSSSHDTVSDEAGVRNNDNDNINNLCQNDKGTSSNDAVSRVVMEIPKHASSTGIRKITFKFSKKKEDYDDYQTPTGYTDGSGSDYGYSYGNGSGYGYGYGYHGDDDYLANDDYNSGLVESSYGRGYVPYEDSELYSGNMELKMSKKVVPNAFPNNVKKLLSTGILDGAAVKYIYNPGKVELDGIIGDGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTATNSTPDEVIKNVAGSSINEGSFQVWKESLLQSSKKVPTQKKYSTKYTGMPHTYNSQSIESASSFSSLRVRNHFEQQMYVNQTADEWKRVVKKPSTYTYYSGIPQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYASNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLHSVPESGWHCLNCEDNTGDERGARPIMIRLTRVDKEPEYEVGGCVVCRANDFSVDKFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHEDRGLCTYGDMNDIQWRILSGKSRYAEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNIAELPLVATSREHQGKGYFQALFSCIEKLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLTKHLKEVQLTLFNKTSVLEKMVQATE*