Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG003205 | XP_013468354.1 | 90.365 | 602 | 47 | 2 | 1 | 597 | 1 | 596 | 0.0 | 1080 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG003205 | sp|F4KCE9|KNL2_ARATH | 43.590 | 117 | 61 | 4 | 17 | 130 | 11 | 125 | 1.56e-20 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG003205 | tr|A0A072VLC9|A0A072VLC9_MEDTR | 90.365 | 602 | 47 | 2 | 1 | 597 | 1 | 596 | 0.0 | 1080 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG003205 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG001010 | MsaG003205 | 0.825552 | 7.826111e-54 | 1.998807e-51 |
| MsaG001011 | MsaG003205 | 0.804834 | 3.016264e-49 | 4.555332e-47 |
| MsaG001403 | MsaG003205 | 0.830474 | 5.177420e-55 | 1.518758e-52 |
| MsaG002201 | MsaG003205 | 0.807970 | 6.628818e-50 | 1.077968e-47 |
| MsaG003067 | MsaG003205 | 0.803940 | 4.621412e-49 | 6.836298e-47 |
| MsaG003188 | MsaG003205 | 0.806778 | 1.182986e-49 | 1.869947e-47 |
| MsaG003205 | MsaG006884 | 0.825894 | 6.498052e-54 | 1.675551e-51 |
| MsaG003205 | MsaG007035 | 0.800659 | 2.173525e-48 | 2.982896e-46 |
| MsaG003205 | MsaG007798 | 0.816121 | 1.129500e-51 | 2.246340e-49 |
| MsaG003205 | MsaG008592 | 0.810527 | 1.886799e-50 | 3.263874e-48 |
| MsaG003205 | MsaG012331 | 0.818437 | 3.421229e-52 | 7.221860e-50 |
| MsaG003205 | MsaG016231 | 0.822599 | 3.831348e-53 | 9.029364e-51 |
| MsaG003205 | MsaG017614 | 0.810211 | 2.206265e-50 | 3.787046e-48 |
| MsaG003205 | MsaG019430 | 0.801036 | 1.821997e-48 | 2.521715e-46 |
| MsaG003205 | MsaG021311 | 0.825452 | 8.262074e-54 | 2.104302e-51 |
| MsaG003205 | MsaG022597 | 0.800100 | 2.821249e-48 | 3.823100e-46 |
| MsaG003205 | MsaG023277 | 0.801149 | 1.727889e-48 | 2.397586e-46 |
| MsaG003205 | MsaG027177 | 0.805366 | 2.336643e-49 | 3.572744e-47 |
| MsaG003205 | MsaG027359 | 0.807081 | 1.021541e-49 | 1.626269e-47 |
| MsaG003205 | MsaG027692 | 0.846382 | 4.233618e-59 | 2.030692e-56 |
| MsaG003205 | MsaG028043 | 0.802637 | 8.576676e-49 | 1.231146e-46 |
| MsaG003205 | MsaG028091 | 0.829547 | 8.691692e-55 | 2.483054e-52 |
| MsaG003205 | MsaG030334 | 0.808881 | 4.246461e-50 | 7.058769e-48 |
| MsaG003205 | MsaG033568 | 0.804638 | 3.313076e-49 | 4.980708e-47 |
| MsaG003205 | MsaG034248 | 0.800639 | 2.194567e-48 | 3.010370e-46 |
| MsaG003205 | MsaG034398 | 0.825639 | 7.461975e-54 | 1.910381e-51 |
| MsaG003205 | MsaG039843 | 0.803244 | 6.434624e-49 | 9.366391e-47 |
| MsaG003205 | MsaG042122 | 0.806203 | 1.562230e-49 | 2.436140e-47 |
| MsaG003205 | MsaG042546 | 0.802856 | 7.732984e-49 | 1.115571e-46 |
| MsaG003205 | MsaG044390 | 0.814626 | 2.419389e-51 | 4.632911e-49 |
| MsaG003205 | MsaG046214 | 0.803818 | 4.898715e-49 | 7.225904e-47 |
| MsaG003205 | MsaG009207 | 0.804203 | 4.078524e-49 | 6.070087e-47 |
| MsaG003205 | MsaG033085 | 0.804463 | 3.602053e-49 | 5.393212e-47 |
| MsaG003205 | MsaG031850 | 0.828488 | 1.564806e-54 | 4.338388e-52 |
| MsaG003205 | MsaG038622 | 0.840024 | 2.060149e-57 | 8.048856e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG003205 | MtrunA17_Chr1g0182621 | 90.365 | 602 | 47 | 2 | 1 | 597 | 1 | 596 | 0.0 | 1080 |
| MsaG003205 | MtrunA17_Chr1g0182611 | 67.908 | 349 | 106 | 2 | 241 | 583 | 131 | 479 | 4.13e-149 | 439 |
| MsaG003205 | MtrunA17_Chr1g0182611 | 59.599 | 349 | 132 | 3 | 1 | 343 | 1 | 346 | 3.72e-132 | 395 |
| MsaG003205 | MtrunA17_Chr7g0231611 | 38.028 | 142 | 71 | 6 | 1 | 133 | 1 | 134 | 6.25e-17 | 82.8 |
| MsaG003205 | MtrunA17_Chr5g0416851 | 38.028 | 142 | 71 | 6 | 1 | 133 | 1 | 134 | 6.91e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG003205 | AT5G02520.1 | 43.590 | 117 | 61 | 4 | 17 | 130 | 11 | 125 | 1.58e-21 | 99.4 |
| MsaG003205 | AT5G02520.2 | 43.590 | 117 | 61 | 4 | 17 | 130 | 11 | 125 | 1.64e-21 | 99.4 |
| MsaG003205 | AT5G02520.3 | 43.590 | 117 | 61 | 4 | 17 | 130 | 11 | 125 | 2.52e-21 | 98.6 |
| MsaG003205 | AT1G58210.1 | 36.522 | 115 | 64 | 3 | 5 | 114 | 41 | 151 | 2.53e-15 | 77.4 |
Find 144 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAGATAATATTTC+TGG | 0.175942 | 1:+53366049 | None:intergenic |
| TTACCATCAAATGATATTTC+TGG | 0.188236 | 1:+53366462 | None:intergenic |
| AATGGAGTCTTGCAATTCTC+TGG | 0.210078 | 1:+53366729 | None:intergenic |
| CAGTAGCAGGTTGCTTCTTC+TGG | 0.230387 | 1:+53365731 | None:intergenic |
| CATATGCAGGCTGCTTCTTC+TGG | 0.231464 | 1:+53366176 | None:intergenic |
| CAATTCTCTGGGGCCTCTTC+AGG | 0.246287 | 1:+53366741 | None:intergenic |
| TTCTACCTCCCTTAGAGTTT+TGG | 0.256165 | 1:-53365091 | MsaT003205.1:CDS |
| TGGTAATAGTAATTGTTTAC+TGG | 0.271707 | 1:-53364621 | MsaT003205.1:CDS |
| TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1:+53365703 | None:intergenic |
| AGATTTGCTGGTACATTATC+AGG | 0.278683 | 1:+53366486 | None:intergenic |
| ATTGGAAAATTTACCAGATC+TGG | 0.281653 | 1:+53365342 | None:intergenic |
| TGATTCGGGCAATGCTGTTT+TGG | 0.283336 | 1:-53366953 | MsaT003205.1:CDS |
| GATATTTCTGGAAGATTTGC+TGG | 0.294734 | 1:+53366474 | None:intergenic |
| AAATTCTGTTCCTACGTCTT+TGG | 0.304145 | 1:-53366329 | MsaT003205.1:CDS |
| TCACATACCATGTTATAAAT+AGG | 0.311211 | 1:+53365056 | None:intergenic |
| CTATTTGATCAGCTTTGTTA+TGG | 0.322509 | 1:-53364654 | MsaT003205.1:intron |
| TTTGTTATGGTTATTGCTAT+TGG | 0.326229 | 1:-53364641 | MsaT003205.1:CDS |
| ACATATCTTGTTCATCTTCA+AGG | 0.335841 | 1:+53366281 | None:intergenic |
| CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1:-53364957 | MsaT003205.1:CDS |
| TTGATTGCGCCAAAACTCTA+AGG | 0.343897 | 1:+53365082 | None:intergenic |
| AGATTCGTTGATACATTATC+AGG | 0.360747 | 1:+53366073 | None:intergenic |
| GTAGAGCTCTGCTCTTTCTC+TGG | 0.362481 | 1:+53366136 | None:intergenic |
| CTTCCAGAAATATCATTTGA+TGG | 0.363684 | 1:-53366465 | MsaT003205.1:intron |
| GGAAGAGTAAACACAATGTC+TGG | 0.368000 | 1:-53365601 | MsaT003205.1:CDS |
| GCAGAGATCTGGTCTTTATC+TGG | 0.371673 | 1:+53365691 | None:intergenic |
| TGAGACTTTGCATTCATCTC+CGG | 0.373003 | 1:+53366704 | None:intergenic |
| GGTTGTGGAAAATCATGATT+TGG | 0.381883 | 1:-53366107 | MsaT003205.1:CDS |
| AATGATGAAGAGCCTCTAAA+AGG | 0.383621 | 1:+53364914 | None:intergenic |
| ATCAGAAACCGGTACTGATT+CGG | 0.388923 | 1:-53366968 | MsaT003205.1:CDS |
| TCAGAAACCGGTACTGATTC+GGG | 0.390167 | 1:-53366967 | MsaT003205.1:CDS |
| ACATATCCCGTTCATCTTTG+AGG | 0.399307 | 1:+53365836 | None:intergenic |
| AAACAGTGCACACTGGATAA+TGG | 0.412705 | 1:-53367192 | MsaT003205.1:CDS |
| GTTGATATTGCTTGTGGTAG+TGG | 0.415196 | 1:-53366666 | MsaT003205.1:CDS |
| AGGATTTAACATTATGCATC+CGG | 0.417454 | 1:+53365755 | None:intergenic |
| GGGTGTGCAATTAGAAGAAC+TGG | 0.418914 | 1:+53367863 | None:intergenic |
| ATGGAGTCTTGCAATTCTCT+GGG | 0.433444 | 1:+53366730 | None:intergenic |
| ATTCAGGGAAGAAGCGGTTC+GGG | 0.436156 | 1:-53367307 | MsaT003205.1:intron |
| TCCTACTTCTTTGTTATCAC+CGG | 0.437184 | 1:-53365890 | MsaT003205.1:CDS |
| GATTCAGGGAAGAAGCGGTT+CGG | 0.441206 | 1:-53367308 | MsaT003205.1:intron |
| TTTAGAGGCTCTTCATCATT+GGG | 0.442092 | 1:-53364911 | MsaT003205.1:CDS |
| GATCTCTGCCTCAGCAGCCT+TGG | 0.442994 | 1:-53365677 | MsaT003205.1:CDS |
| GACCATGGGAGATCGCAATA+AGG | 0.444355 | 1:-53365863 | MsaT003205.1:CDS |
| CAGAAGAAGCAACCTGCTAC+TGG | 0.444849 | 1:-53365730 | MsaT003205.1:CDS |
| GGCACTCCTCAAAGATGAAC+GGG | 0.449784 | 1:-53365842 | MsaT003205.1:CDS |
| AGTGAGGTCAACGATGTTCA+TGG | 0.454444 | 1:-53366247 | MsaT003205.1:CDS |
| AACACCCGTTCAATCACAAA+AGG | 0.455345 | 1:-53365623 | MsaT003205.1:CDS |
| CAGAAGAAGCAGCCTGCATA+TGG | 0.461694 | 1:-53366175 | MsaT003205.1:CDS |
| GGTAATAGTAATTGTTTACT+GGG | 0.467495 | 1:-53364620 | MsaT003205.1:CDS |
| GAGACTTTGCATTCATCTCC+GGG | 0.467675 | 1:+53366705 | None:intergenic |
| CGATCTCCCATGGTCTTATC+CGG | 0.467896 | 1:+53365871 | None:intergenic |
| TTGCATTCATCTCCGGGGAA+TGG | 0.473283 | 1:+53366711 | None:intergenic |
| ACGGCCTTTGAGGTAGAGCT+TGG | 0.476441 | 1:+53366537 | None:intergenic |
| GAGCTCTACCTTGAAGGTTG+TGG | 0.482477 | 1:-53366122 | MsaT003205.1:CDS |
| GAACGGTTACATTATACGAT+TGG | 0.482529 | 1:-53367812 | MsaT003205.1:CDS |
| CTCGATGTAGGATGCTGCTT+CGG | 0.487404 | 1:+53366588 | None:intergenic |
| AGGCTGCTGAGGCAGAGATC+TGG | 0.487795 | 1:+53365680 | None:intergenic |
| GTCAACGATGTTCATGGTAG+TGG | 0.490994 | 1:-53366241 | MsaT003205.1:CDS |
| GTCAATGTTGTTCATTGTAG+TGG | 0.492574 | 1:-53365796 | MsaT003205.1:CDS |
| TTATCAGGAACAACAGTATC+CGG | 0.501961 | 1:+53366501 | None:intergenic |
| TTCTTCTTGCTTCCAACGAA+CGG | 0.503942 | 1:-53367829 | MsaT003205.1:CDS |
| TCTTTCTCTGGATTCTTGAG+AGG | 0.504491 | 1:+53366148 | None:intergenic |
| GGCCGTCGAAAATCATGATC+CGG | 0.505332 | 1:-53366520 | MsaT003205.1:CDS |
| AGAGCAGAGCTCTACCTTGA+AGG | 0.508453 | 1:-53366128 | MsaT003205.1:CDS |
| AGTCCTTAGTACTATGCAAC+CGG | 0.517646 | 1:+53366200 | None:intergenic |
| GAGGCTCTTCATCATTGGGC+AGG | 0.522623 | 1:-53364907 | MsaT003205.1:intron |
| TGCCTTATTGCGATCTCCCA+TGG | 0.525598 | 1:+53365861 | None:intergenic |
| ACCGGCCACTACGTCTAGTC+CGG | 0.527410 | 1:+53366218 | None:intergenic |
| CGTATAATGTAACCGTTCGT+TGG | 0.528108 | 1:+53367817 | None:intergenic |
| AGCATTGCCCGAATCAGTAC+CGG | 0.533197 | 1:+53366960 | None:intergenic |
| CGGTTACATTATACGATTGG+TGG | 0.540059 | 1:-53367809 | MsaT003205.1:CDS |
| TTGAGAGGATCTCCATATGC+AGG | 0.543432 | 1:+53366163 | None:intergenic |
| GGAAATGACTGATGGAGGAC+TGG | 0.545081 | 1:-53365656 | MsaT003205.1:CDS |
| ATGTTGTTCATTGTAGTGGC+GGG | 0.548066 | 1:-53365792 | MsaT003205.1:CDS |
| GACTTTAATATTATGCAACC+TGG | 0.548218 | 1:+53366626 | None:intergenic |
| TATCAAGGAACTTTCTCTGA+CGG | 0.548904 | 1:-53366913 | MsaT003205.1:intron |
| AGACGCCGGAGATGGCTAAA+CGG | 0.549320 | 1:+53367757 | None:intergenic |
| TCAGGCAATACCGACGAAGT+AGG | 0.550175 | 1:+53366759 | None:intergenic |
| AGCAGGTTGCTTCTTCTGGT+AGG | 0.553452 | 1:+53365735 | None:intergenic |
| CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1:+53364957 | None:intergenic |
| TGGCCGGTTGCATAGTACTA+AGG | 0.554205 | 1:-53366203 | MsaT003205.1:CDS |
| AAGTCTCAAAGAAGATGAGT+GGG | 0.555389 | 1:-53366689 | MsaT003205.1:CDS |
| GTTAGAGAACAATCAGAAAC+CGG | 0.557595 | 1:-53366979 | MsaT003205.1:CDS |
| AACCACCGTTTAGCCATCTC+CGG | 0.558688 | 1:-53367762 | MsaT003205.1:CDS |
| GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1:+53365718 | None:intergenic |
| GCAGCCTTGGAAATGACTGA+TGG | 0.560856 | 1:-53365664 | MsaT003205.1:CDS |
| TGTGGAAGAGACGCCGGAGA+TGG | 0.563212 | 1:+53367749 | None:intergenic |
| GCGGGAATAGACGTAGTGCC+CGG | 0.565247 | 1:-53365774 | MsaT003205.1:CDS |
| AGTAAACACAATGTCTGGGC+AGG | 0.565926 | 1:-53365596 | MsaT003205.1:CDS |
| TCCGGTGATAACAAAGAAGT+AGG | 0.566020 | 1:+53365889 | None:intergenic |
| TTGAGAGGACCTCTCGATGT+AGG | 0.566402 | 1:+53366576 | None:intergenic |
| CGGGATATGTCAATTAAGAC+GGG | 0.568225 | 1:-53365823 | MsaT003205.1:CDS |
| ACGGGATATGTCAATTAAGA+CGG | 0.571346 | 1:-53365824 | MsaT003205.1:CDS |
| ATATGTCAATTAAGACGGGT+AGG | 0.573298 | 1:-53365819 | MsaT003205.1:CDS |
| AATTGCAAGACTCCATTCCC+CGG | 0.573734 | 1:-53366723 | MsaT003205.1:CDS |
| CTGTAAAATCTCCTCAAGGA+AGG | 0.576048 | 1:-53365441 | MsaT003205.1:CDS |
| TCTTCATCTGAACGCTTGAG+AGG | 0.576282 | 1:+53366561 | None:intergenic |
| AGTGGGGTTGATATTGCTTG+TGG | 0.577027 | 1:-53366672 | MsaT003205.1:CDS |
| CAATACCGACGAAGTAGGAA+TGG | 0.577162 | 1:+53366764 | None:intergenic |
| GAATGTAAGTCACTCAAACA+AGG | 0.580926 | 1:-53365419 | MsaT003205.1:CDS |
| TGACTTACATTCCTTCCTTG+AGG | 0.581463 | 1:+53365430 | None:intergenic |
| GGATTTAACATTATGCATCC+GGG | 0.586374 | 1:+53365756 | None:intergenic |
| AATGTTGTTCATTGTAGTGG+CGG | 0.586527 | 1:-53365793 | MsaT003205.1:CDS |
| ACGATGTTCATGGTAGTGGC+CGG | 0.588769 | 1:-53366237 | MsaT003205.1:CDS |
| AGTCATTTCCAAGGCTGCTG+AGG | 0.594162 | 1:+53365669 | None:intergenic |
| CTTCCAGAAATATTATCTGA+TGG | 0.594536 | 1:-53366052 | MsaT003205.1:intron |
| GAAGAGTAAACACAATGTCT+GGG | 0.597995 | 1:-53365600 | MsaT003205.1:CDS |
| CATTAATAAACAGTGCACAC+TGG | 0.598333 | 1:-53367199 | MsaT003205.1:CDS |
| ACACCCGTTCAATCACAAAA+GGG | 0.599424 | 1:-53365622 | MsaT003205.1:CDS |
| TCCTCCATCAGTCATTTCCA+AGG | 0.602323 | 1:+53365660 | None:intergenic |
| AGGCACTCCTCAAAGATGAA+CGG | 0.602783 | 1:-53365843 | MsaT003205.1:CDS |
| TGATTGCGCCAAAACTCTAA+GGG | 0.604798 | 1:+53365083 | None:intergenic |
| GTTATCACCGGATAAGACCA+TGG | 0.605592 | 1:-53365878 | MsaT003205.1:CDS |
| TGGAAGCAAGAAGAAGAAGA+AGG | 0.606225 | 1:+53367837 | None:intergenic |
| AATGTAAGTCACTCAAACAA+GGG | 0.606573 | 1:-53365418 | MsaT003205.1:CDS |
| GCCTTGGAAATGACTGATGG+AGG | 0.606817 | 1:-53365661 | MsaT003205.1:CDS |
| GTTTCCCTTGAGACTGTCGA+TGG | 0.607459 | 1:-53367246 | MsaT003205.1:CDS |
| ATATACCATCGACAGTCTCA+AGG | 0.611734 | 1:+53367241 | None:intergenic |
| AAAGTCCATTCCTACTTCGT+CGG | 0.616794 | 1:-53366769 | MsaT003205.1:CDS |
| GTTGTGATTCAGGGAAGAAG+CGG | 0.620242 | 1:-53367313 | MsaT003205.1:intron |
| AGAGCCAAGCTCTACCTCAA+AGG | 0.621891 | 1:-53366541 | MsaT003205.1:CDS |
| AAAGTCTCAAAGAAGATGAG+TGG | 0.624361 | 1:-53366690 | MsaT003205.1:CDS |
| TATGTCAATTAAGACGGGTA+GGG | 0.624553 | 1:-53365818 | MsaT003205.1:CDS |
| TTATCACCGGATAAGACCAT+GGG | 0.624895 | 1:-53365877 | MsaT003205.1:CDS |
| TTACTTTGTGGAAGAGACGC+CGG | 0.624985 | 1:+53367743 | None:intergenic |
| TATTATCAAAAGATATGATG+AGG | 0.626070 | 1:-53367268 | MsaT003205.1:CDS |
| TCTTCTGTAAAATCTCCTCA+AGG | 0.626237 | 1:-53365445 | MsaT003205.1:CDS |
| TTCGTCGGTATTGCCTGAAG+AGG | 0.626897 | 1:-53366754 | MsaT003205.1:CDS |
| TATACCATCGACAGTCTCAA+GGG | 0.636705 | 1:+53367242 | None:intergenic |
| CAATGACTCTGGAGAAACTG+TGG | 0.637102 | 1:+53365378 | None:intergenic |
| GCCGGACTAGACGTAGTGGC+CGG | 0.638720 | 1:-53366219 | MsaT003205.1:CDS |
| TCAACAACCTATTTATAACA+TGG | 0.640146 | 1:-53365063 | MsaT003205.1:intron |
| GAGATTACAGAAATTCAGGA+AGG | 0.641599 | 1:-53364953 | MsaT003205.1:CDS |
| GGCGACAATTGAAACAGAAG+CGG | 0.644820 | 1:-53365500 | MsaT003205.1:CDS |
| TGGCTCGTTAAATCATGTCA+AGG | 0.652527 | 1:-53367789 | MsaT003205.1:CDS |
| TGGAGTCTTGCAATTCTCTG+GGG | 0.655923 | 1:+53366731 | None:intergenic |
| AAGCAGCATCCTACATCGAG+AGG | 0.662773 | 1:-53366585 | MsaT003205.1:CDS |
| TATGTCAATTAAGATGAGTG+AGG | 0.667369 | 1:-53366263 | MsaT003205.1:CDS |
| CGCCGGAGATGGCTAAACGG+TGG | 0.689679 | 1:+53367760 | None:intergenic |
| AGACTTTGCATTCATCTCCG+GGG | 0.700085 | 1:+53366706 | None:intergenic |
| TTGCGCCAAAACTCTAAGGG+AGG | 0.703796 | 1:+53365086 | None:intergenic |
| AGTGGCCGGACTAGACGTAG+TGG | 0.713698 | 1:-53366223 | MsaT003205.1:CDS |
| AGTCTCAAAGAAGATGAGTG+GGG | 0.750570 | 1:-53366688 | MsaT003205.1:CDS |
| TCTCTCGTGACCAAAGACGT+AGG | 0.753414 | 1:+53366319 | None:intergenic |
| GGTGTGCAATTAGAAGAACT+GGG | 0.781722 | 1:+53367864 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 53364610 | 53367901 | 53364610 | ID=MsaG003205 |
| Chr1 | mRNA | 53364610 | 53367901 | 53364610 | ID=MsaT003205.1;Parent=MsaG003205 |
| Chr1 | exon | 53364610 | 53364664 | 53364610 | ID=MsaT003205.1.exon9;Parent=MsaT003205.1 |
| Chr1 | CDS | 53364610 | 53364664 | 53364610 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53364908 | 53364981 | 53364908 | ID=MsaT003205.1.exon8;Parent=MsaT003205.1 |
| Chr1 | CDS | 53364908 | 53364981 | 53364908 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53365064 | 53365122 | 53365064 | ID=MsaT003205.1.exon7;Parent=MsaT003205.1 |
| Chr1 | CDS | 53365064 | 53365122 | 53365064 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53365356 | 53365928 | 53365356 | ID=MsaT003205.1.exon6;Parent=MsaT003205.1 |
| Chr1 | CDS | 53365356 | 53365928 | 53365356 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53366053 | 53366358 | 53366053 | ID=MsaT003205.1.exon5;Parent=MsaT003205.1 |
| Chr1 | CDS | 53366053 | 53366358 | 53366053 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53366466 | 53366798 | 53366466 | ID=MsaT003205.1.exon4;Parent=MsaT003205.1 |
| Chr1 | CDS | 53366466 | 53366798 | 53366466 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53366914 | 53367061 | 53366914 | ID=MsaT003205.1.exon3;Parent=MsaT003205.1 |
| Chr1 | CDS | 53366914 | 53367061 | 53366914 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53367179 | 53367323 | 53367179 | ID=MsaT003205.1.exon2;Parent=MsaT003205.1 |
| Chr1 | CDS | 53367179 | 53367323 | 53367179 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Chr1 | exon | 53367747 | 53367901 | 53367747 | ID=MsaT003205.1.exon1;Parent=MsaT003205.1 |
| Chr1 | CDS | 53367747 | 53367901 | 53367747 | ID=cds.MsaT003205.1;Parent=MsaT003205.1 |
| Gene Sequence |
| Protein sequence |