Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003223 | XP_024641248.2 | 73.117 | 770 | 191 | 5 | 1 | 765 | 1 | 759 | 0.0 | 1150 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003223 | sp|Q9SY66|FRS11_ARATH | 49.206 | 630 | 309 | 4 | 48 | 672 | 42 | 665 | 0.0 | 642 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003223 | tr|A0A396JX52|A0A396JX52_MEDTR | 73.117 | 770 | 191 | 5 | 1 | 765 | 1 | 759 | 0.0 | 1150 |
Gene ID | Type | Classification |
---|---|---|
MsaG003223 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003223 | MtrunA17_Chr1g0198761 | 73.117 | 770 | 191 | 5 | 1 | 765 | 1 | 759 | 0.0 | 1150 |
MsaG003223 | MtrunA17_Chr5g0431001 | 75.052 | 481 | 110 | 2 | 1 | 471 | 1 | 481 | 0.0 | 745 |
MsaG003223 | MtrunA17_Chr2g0276841 | 48.036 | 662 | 320 | 7 | 19 | 672 | 42 | 687 | 0.0 | 654 |
MsaG003223 | MtrunA17_Chr2g0294841 | 42.507 | 734 | 381 | 10 | 34 | 739 | 25 | 745 | 0.0 | 600 |
MsaG003223 | MtrunA17_Chr2g0290391 | 46.772 | 635 | 299 | 9 | 53 | 666 | 50 | 666 | 0.0 | 564 |
MsaG003223 | MtrunA17_Chr1g0202341 | 30.795 | 604 | 395 | 10 | 19 | 614 | 20 | 608 | 2.02e-86 | 288 |
MsaG003223 | MtrunA17_Chr5g0448761 | 31.552 | 580 | 363 | 13 | 54 | 614 | 60 | 624 | 1.59e-81 | 277 |
MsaG003223 | MtrunA17_Chr3g0080351 | 29.202 | 589 | 351 | 14 | 54 | 616 | 76 | 624 | 3.78e-76 | 263 |
MsaG003223 | MtrunA17_Chr2g0296781 | 29.472 | 682 | 429 | 20 | 60 | 716 | 3 | 657 | 1.23e-74 | 257 |
MsaG003223 | MtrunA17_Chr5g0441581 | 29.635 | 685 | 421 | 22 | 52 | 711 | 30 | 678 | 8.96e-72 | 248 |
MsaG003223 | MtrunA17_Chr1g0203051 | 27.636 | 550 | 368 | 10 | 66 | 603 | 91 | 622 | 2.35e-69 | 241 |
MsaG003223 | MtrunA17_Chr2g0329031 | 27.221 | 709 | 439 | 20 | 60 | 733 | 20 | 686 | 4.26e-69 | 242 |
MsaG003223 | MtrunA17_Chr6g0458391 | 29.361 | 579 | 372 | 9 | 46 | 616 | 217 | 766 | 8.31e-69 | 242 |
MsaG003223 | MtrunA17_Chr1g0207551 | 30.261 | 575 | 371 | 12 | 54 | 616 | 34 | 590 | 1.15e-68 | 242 |
MsaG003223 | MtrunA17_Chr2g0287651 | 28.722 | 571 | 371 | 13 | 60 | 614 | 81 | 631 | 1.98e-66 | 237 |
MsaG003223 | MtrunA17_Chr2g0287061 | 28.547 | 578 | 336 | 15 | 54 | 614 | 183 | 700 | 2.72e-66 | 235 |
MsaG003223 | MtrunA17_Chr8g0363841 | 28.348 | 575 | 381 | 12 | 55 | 614 | 18 | 576 | 9.47e-66 | 231 |
MsaG003223 | MtrunA17_Chr6g0477261 | 31.397 | 551 | 340 | 16 | 184 | 710 | 4 | 540 | 2.03e-65 | 230 |
MsaG003223 | MtrunA17_Chr5g0440451 | 26.170 | 684 | 425 | 17 | 54 | 697 | 43 | 686 | 4.36e-64 | 231 |
MsaG003223 | MtrunA17_Chr3g0082121 | 29.479 | 614 | 374 | 23 | 43 | 636 | 32 | 606 | 9.80e-63 | 223 |
MsaG003223 | MtrunA17_Chr2g0324011 | 27.491 | 582 | 393 | 14 | 46 | 614 | 2 | 567 | 1.44e-59 | 212 |
MsaG003223 | MtrunA17_Chr1g0196541 | 27.310 | 725 | 451 | 22 | 60 | 750 | 3 | 685 | 6.18e-58 | 211 |
MsaG003223 | MtrunA17_Chr1g0203721 | 26.170 | 577 | 391 | 11 | 57 | 616 | 66 | 624 | 6.26e-57 | 209 |
MsaG003223 | MtrunA17_Chr5g0448511 | 32.011 | 378 | 250 | 3 | 239 | 610 | 16 | 392 | 1.23e-55 | 200 |
MsaG003223 | MtrunA17_Chr3g0118611 | 30.189 | 424 | 284 | 6 | 193 | 610 | 79 | 496 | 1.13e-54 | 202 |
MsaG003223 | MtrunA17_Chr2g0291581 | 23.449 | 661 | 424 | 14 | 53 | 674 | 70 | 687 | 2.19e-49 | 185 |
MsaG003223 | MtrunA17_Chr3g0081281 | 87.097 | 93 | 12 | 0 | 199 | 291 | 1 | 93 | 2.52e-48 | 165 |
MsaG003223 | MtrunA17_Chr5g0430921 | 79.545 | 88 | 15 | 1 | 669 | 756 | 1 | 85 | 4.31e-41 | 145 |
MsaG003223 | MtrunA17_Chr2g0291591 | 24.953 | 533 | 347 | 14 | 54 | 563 | 64 | 566 | 2.72e-40 | 157 |
MsaG003223 | MtrunA17_Chr1g0164591 | 32.524 | 206 | 137 | 2 | 250 | 454 | 104 | 308 | 3.75e-34 | 133 |
MsaG003223 | MtrunA17_Chr7g0258861 | 25.253 | 297 | 207 | 6 | 46 | 337 | 2 | 288 | 2.30e-23 | 101 |
MsaG003223 | MtrunA17_Chr2g0308841 | 26.126 | 222 | 154 | 5 | 408 | 623 | 14 | 231 | 2.25e-17 | 83.2 |
MsaG003223 | MtrunA17_Chr1g0171741 | 32.203 | 118 | 68 | 3 | 60 | 174 | 139 | 247 | 6.18e-14 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003223 | AT1G10240.2 | 49.206 | 630 | 309 | 4 | 48 | 672 | 42 | 665 | 0.0 | 642 |
MsaG003223 | AT1G10240.1 | 49.206 | 630 | 309 | 4 | 48 | 672 | 42 | 665 | 0.0 | 642 |
MsaG003223 | AT5G28530.3 | 43.407 | 675 | 338 | 11 | 25 | 678 | 28 | 679 | 0.0 | 547 |
MsaG003223 | AT5G28530.2 | 43.407 | 675 | 338 | 11 | 25 | 678 | 28 | 679 | 0.0 | 547 |
MsaG003223 | AT5G28530.1 | 43.407 | 675 | 342 | 11 | 25 | 678 | 28 | 683 | 0.0 | 547 |
MsaG003223 | AT5G28530.4 | 38.797 | 665 | 324 | 12 | 25 | 678 | 28 | 620 | 3.99e-148 | 448 |
MsaG003223 | AT5G28530.5 | 38.797 | 665 | 320 | 12 | 25 | 678 | 28 | 616 | 4.01e-148 | 448 |
MsaG003223 | AT4G38180.1 | 30.743 | 592 | 386 | 10 | 38 | 617 | 59 | 638 | 6.35e-84 | 284 |
MsaG003223 | AT4G15090.1 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 2.66e-81 | 278 |
MsaG003223 | AT4G15090.5 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 2.66e-81 | 278 |
MsaG003223 | AT4G15090.3 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 2.66e-81 | 278 |
MsaG003223 | AT4G15090.2 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 2.66e-81 | 278 |
MsaG003223 | AT4G15090.4 | 28.716 | 693 | 443 | 16 | 54 | 721 | 51 | 717 | 2.66e-81 | 278 |
MsaG003223 | AT1G76320.3 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 3.89e-67 | 236 |
MsaG003223 | AT1G76320.2 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 8.85e-67 | 236 |
MsaG003223 | AT1G76320.1 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 9.52e-67 | 236 |
MsaG003223 | AT1G76320.4 | 28.850 | 565 | 360 | 11 | 60 | 610 | 3 | 539 | 9.52e-67 | 236 |
MsaG003223 | AT3G22170.2 | 25.547 | 685 | 429 | 20 | 54 | 705 | 70 | 706 | 7.00e-66 | 235 |
MsaG003223 | AT3G22170.1 | 25.547 | 685 | 429 | 20 | 54 | 705 | 70 | 706 | 7.00e-66 | 235 |
MsaG003223 | AT5G18960.2 | 26.014 | 592 | 364 | 13 | 39 | 616 | 198 | 729 | 5.33e-59 | 215 |
MsaG003223 | AT5G18960.1 | 26.014 | 592 | 364 | 13 | 39 | 616 | 198 | 729 | 5.33e-59 | 215 |
MsaG003223 | AT3G06250.2 | 25.997 | 577 | 352 | 12 | 54 | 616 | 190 | 705 | 3.09e-58 | 212 |
MsaG003223 | AT3G06250.1 | 25.997 | 577 | 352 | 12 | 54 | 616 | 190 | 705 | 3.09e-58 | 212 |
MsaG003223 | AT3G06250.3 | 25.997 | 577 | 352 | 12 | 54 | 616 | 190 | 705 | 3.09e-58 | 212 |
MsaG003223 | AT2G27110.2 | 25.896 | 614 | 403 | 13 | 54 | 658 | 49 | 619 | 5.36e-55 | 204 |
MsaG003223 | AT2G27110.1 | 25.896 | 614 | 403 | 13 | 54 | 658 | 49 | 619 | 5.36e-55 | 204 |
MsaG003223 | AT2G27110.3 | 28.637 | 433 | 291 | 9 | 235 | 658 | 51 | 474 | 1.03e-50 | 190 |
MsaG003223 | AT2G32250.5 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 6.03e-49 | 185 |
MsaG003223 | AT4G19990.5 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 7.35e-49 | 185 |
MsaG003223 | AT4G19990.6 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 8.32e-49 | 185 |
MsaG003223 | AT4G19990.2 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 8.32e-49 | 185 |
MsaG003223 | AT4G19990.3 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 9.04e-49 | 185 |
MsaG003223 | AT4G19990.4 | 26.451 | 586 | 354 | 14 | 56 | 614 | 23 | 558 | 9.04e-49 | 185 |
MsaG003223 | AT4G19990.7 | 26.451 | 586 | 354 | 14 | 56 | 614 | 37 | 572 | 1.12e-48 | 184 |
MsaG003223 | AT2G32250.2 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 1.21e-48 | 185 |
MsaG003223 | AT2G32250.4 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 1.21e-48 | 185 |
MsaG003223 | AT2G32250.6 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 1.25e-48 | 185 |
MsaG003223 | AT2G32250.1 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 1.25e-48 | 185 |
MsaG003223 | AT2G32250.3 | 24.518 | 571 | 361 | 11 | 57 | 615 | 41 | 553 | 1.25e-48 | 185 |
MsaG003223 | AT1G52520.1 | 25.685 | 584 | 380 | 17 | 53 | 613 | 84 | 636 | 1.67e-48 | 183 |
MsaG003223 | AT2G32250.8 | 24.472 | 568 | 359 | 11 | 60 | 615 | 3 | 512 | 1.69e-48 | 184 |
MsaG003223 | AT2G32250.7 | 24.472 | 568 | 359 | 11 | 60 | 615 | 3 | 512 | 2.05e-48 | 184 |
MsaG003223 | AT4G38170.1 | 27.027 | 481 | 318 | 10 | 267 | 726 | 45 | 513 | 6.55e-46 | 173 |
MsaG003223 | AT1G80010.1 | 24.876 | 603 | 372 | 18 | 54 | 613 | 95 | 659 | 8.36e-46 | 176 |
MsaG003223 | AT4G19990.1 | 26.248 | 541 | 337 | 12 | 86 | 614 | 11 | 501 | 1.58e-44 | 171 |
MsaG003223 | AT3G59470.3 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 2.12e-13 | 71.2 |
MsaG003223 | AT3G59470.1 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 2.12e-13 | 71.2 |
MsaG003223 | AT3G59470.2 | 37.273 | 110 | 61 | 3 | 54 | 163 | 82 | 183 | 2.79e-13 | 71.2 |
Find 113 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAGATAATTTGATTTATT+TGG | 0.093166 | 1:+53623925 | MsaT003223.1:CDS |
TCTACTCTCATCGTCAATTT+TGG | 0.121901 | 1:+53623122 | MsaT003223.1:CDS |
TACAGGTAACTTACCATTTC+TGG | 0.139830 | 1:+53622350 | MsaT003223.1:CDS |
TTGACTATATGACTGCATTT+TGG | 0.141368 | 1:-53623761 | None:intergenic |
ACATCATAACCATCATTATT+TGG | 0.153794 | 1:-53623968 | None:intergenic |
CTAAAGGCTTTGAAGGAAAA+TGG | 0.187093 | 1:+53622148 | MsaT003223.1:CDS |
TTCATTCAGATGGGCTTTAA+AGG | 0.197395 | 1:+53622704 | MsaT003223.1:CDS |
ACAAACTAGAGCATATTATT+TGG | 0.199763 | 1:+53622511 | MsaT003223.1:CDS |
ACAATCAGAACTTACTTATT+AGG | 0.237831 | 1:-53624169 | None:intergenic |
TGAACGAGAATGGGAATTAA+TGG | 0.241089 | 1:+53623057 | MsaT003223.1:CDS |
ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 1:-53623917 | None:intergenic |
GAGCATATTATTTGGGCATT+TGG | 0.276151 | 1:+53622519 | MsaT003223.1:CDS |
ATTCGAGCATATGAATCTTT+TGG | 0.301566 | 1:+53622549 | MsaT003223.1:CDS |
TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 1:-53623418 | None:intergenic |
AGTACCATAATTCTCTAATT+AGG | 0.305229 | 1:+53623414 | MsaT003223.1:CDS |
TGATTGGTTCCGCCGCAATT+TGG | 0.306685 | 1:-53624088 | None:intergenic |
GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 1:-53624062 | None:intergenic |
AATCATCTATAGATTCTAAA+TGG | 0.332504 | 1:-53623033 | None:intergenic |
GAATTAATGGTTGCACAATT+TGG | 0.333830 | 1:+53623070 | MsaT003223.1:CDS |
TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 1:-53623446 | None:intergenic |
GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 1:-53624040 | None:intergenic |
AAATTCCTCCGACAGATAAA+AGG | 0.354413 | 1:+53623890 | MsaT003223.1:CDS |
CATATAGTCAAATGCAATAA+TGG | 0.354919 | 1:+53623773 | MsaT003223.1:CDS |
ACTTTAAACAGGAGTTTCAT+AGG | 0.356852 | 1:+53623005 | MsaT003223.1:CDS |
CTAATATCCTTCTCCAGAAA+TGG | 0.365717 | 1:-53622363 | None:intergenic |
TGCCACTTGGAATGTGGATT+GGG | 0.366378 | 1:+53622619 | MsaT003223.1:CDS |
CAAACTAGAGCATATTATTT+GGG | 0.370107 | 1:+53622512 | MsaT003223.1:CDS |
TCAGTCTCTAATTCGATGTT+TGG | 0.382120 | 1:+53623811 | MsaT003223.1:CDS |
TTGGTTTCTAAAGGCTTTGA+AGG | 0.384106 | 1:+53622141 | MsaT003223.1:CDS |
TTCAACTTAAGAACAATTGT+AGG | 0.397129 | 1:-53624321 | None:intergenic |
GAGATATATTGACTTTAAAC+AGG | 0.399521 | 1:+53622994 | MsaT003223.1:CDS |
TTTGCTGGGATGACGACAAC+TGG | 0.403764 | 1:+53623172 | MsaT003223.1:CDS |
ATGTAAAAGTCTGAAAGATA+TGG | 0.416400 | 1:+53622449 | MsaT003223.1:CDS |
TAAAGGCTTTGAAGGAAAAT+GGG | 0.419353 | 1:+53622149 | MsaT003223.1:CDS |
AAGTTGAAGATAATGAATAT+TGG | 0.420264 | 1:+53624336 | MsaT003223.1:CDS |
TCATGAACAGTACTAGTTCC+AGG | 0.424449 | 1:-53621853 | None:intergenic |
AAATACATTGTAAAATTCAT+AGG | 0.433492 | 1:-53621920 | None:intergenic |
TTTGGAACATCGGGTACATT+GGG | 0.437206 | 1:-53623950 | None:intergenic |
TTGGGGCCTAGCTTATTTGA+AGG | 0.438270 | 1:+53623141 | MsaT003223.1:CDS |
GCAAAGTTGTTGGTTTCTAA+AGG | 0.440350 | 1:+53622132 | MsaT003223.1:CDS |
GAACTAGTACTGTTCATGAA+TGG | 0.450674 | 1:+53621857 | MsaT003223.1:CDS |
CCATGAGTTATTAGATGATA+AGG | 0.455510 | 1:+53622200 | MsaT003223.1:CDS |
TGGATTAACTCAAACGCATA+TGG | 0.457746 | 1:-53623479 | None:intergenic |
CCATCATTATTTGGAACATC+GGG | 0.457944 | 1:-53623959 | None:intergenic |
ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 1:-53624104 | None:intergenic |
TTGTTGCAAAGTTGTCTAGT+TGG | 0.463573 | 1:+53622951 | MsaT003223.1:CDS |
TAGACGACCACCATCAACTT+TGG | 0.465253 | 1:-53623573 | None:intergenic |
TAGTTGTAGCGCAAAGTTGT+TGG | 0.465803 | 1:+53622122 | MsaT003223.1:CDS |
CTTTCTCTTCTCCATCGAAA+AGG | 0.467284 | 1:-53623728 | None:intergenic |
AGAAGAAATCTTCATTCAGA+TGG | 0.469575 | 1:+53622694 | MsaT003223.1:CDS |
AACTAGTACTGTTCATGAAT+GGG | 0.472834 | 1:+53621858 | MsaT003223.1:CDS |
AAATATGCTGCCATTCATAC+AGG | 0.475969 | 1:+53623524 | MsaT003223.1:CDS |
TTAGAGAAATCAATAGATAC+AGG | 0.477570 | 1:+53622333 | MsaT003223.1:CDS |
CGACATCATACCAAAGTTGA+TGG | 0.478069 | 1:+53623563 | MsaT003223.1:CDS |
ATTTGGAACATCGGGTACAT+TGG | 0.482649 | 1:-53623951 | None:intergenic |
TAAGAAATAGTGCTAGTGAT+TGG | 0.489143 | 1:+53621737 | MsaT003223.1:CDS |
ATAATTGTTACCTGTATGAA+TGG | 0.491038 | 1:-53623534 | None:intergenic |
AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 1:+53624010 | MsaT003223.1:CDS |
CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 1:+53624025 | MsaT003223.1:CDS |
GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 1:+53622000 | MsaT003223.1:CDS |
ATATTATTGTTATCAAAAGC+AGG | 0.503849 | 1:+53622276 | MsaT003223.1:CDS |
ATGCCACTTGGAATGTGGAT+TGG | 0.511770 | 1:+53622618 | MsaT003223.1:CDS |
ACCATCATTATTTGGAACAT+CGG | 0.512682 | 1:-53623960 | None:intergenic |
TGATCCGTAAGGATTGTTTG+TGG | 0.512910 | 1:-53622857 | None:intergenic |
GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 1:+53622036 | MsaT003223.1:CDS |
CCAGGCTGAGGTTCTTGATG+TGG | 0.518896 | 1:-53621835 | None:intergenic |
TGGATTGGGGTTGATAATCA+TGG | 0.518964 | 1:+53622633 | MsaT003223.1:CDS |
CCCGATGTTCCAAATAATGA+TGG | 0.520874 | 1:+53623959 | MsaT003223.1:CDS |
ATTTGGCAATTCCTTTGCAA+TGG | 0.524413 | 1:-53622900 | None:intergenic |
CATCTAATAACTCATGGTTG+TGG | 0.528510 | 1:-53622194 | None:intergenic |
TAGACAATTCAATCTCATGT+TGG | 0.528559 | 1:-53623499 | None:intergenic |
CTTTAAACAGGAGTTTCATA+GGG | 0.528837 | 1:+53623006 | MsaT003223.1:CDS |
AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 1:+53624017 | MsaT003223.1:CDS |
ACTCTCATTATGAGACTCAC+AGG | 0.531933 | 1:-53622303 | None:intergenic |
TAACTTACCATTTCTGGAGA+AGG | 0.534997 | 1:+53622356 | MsaT003223.1:CDS |
TTCCAAGTGGCATATCATAA+CGG | 0.535191 | 1:-53622608 | None:intergenic |
AATAGTCCTTCAAATAAGCT+AGG | 0.536211 | 1:-53623147 | None:intergenic |
ATGGTGGTCGTCTAGTAAGC+TGG | 0.537867 | 1:+53623582 | MsaT003223.1:CDS |
TGGATAGGATCACAAAGGGT+TGG | 0.538952 | 1:+53624256 | MsaT003223.1:intron |
CCACATCAAGAACCTCAGCC+TGG | 0.539330 | 1:+53621835 | MsaT003223.1:CDS |
CCTTATCATCTAATAACTCA+TGG | 0.545462 | 1:-53622200 | None:intergenic |
ATATCCACAAACAATCCTTA+CGG | 0.547845 | 1:+53622853 | MsaT003223.1:CDS |
TGAAGATAATGAATATTGGA+TGG | 0.550060 | 1:+53624340 | MsaT003223.1:CDS |
AACCGTTATGATATGCCACT+TGG | 0.555362 | 1:+53622606 | MsaT003223.1:CDS |
CGTTGTCACGTTCCAAATTG+CGG | 0.556435 | 1:+53624076 | MsaT003223.1:CDS |
GAAGAAATCTTCATTCAGAT+GGG | 0.559436 | 1:+53622695 | MsaT003223.1:CDS |
ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 1:-53622237 | None:intergenic |
TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 1:+53623376 | MsaT003223.1:CDS |
GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 1:+53623368 | MsaT003223.1:CDS |
TGCACAATTTGGTCTAAGCA+AGG | 0.581324 | 1:+53623081 | MsaT003223.1:CDS |
TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 1:+53624002 | MsaT003223.1:CDS |
CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 1:+53623998 | MsaT003223.1:CDS |
AATTGGGATGTTACGATAAG+CGG | 0.587373 | 1:-53622238 | None:intergenic |
TTCCTGGATAGGATCACAAA+GGG | 0.596754 | 1:+53624252 | MsaT003223.1:intron |
ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 1:+53623841 | MsaT003223.1:CDS |
GTGCAAGATCTTGATCCGTA+AGG | 0.602894 | 1:-53622868 | None:intergenic |
ATGATATGCCACTTGGAATG+TGG | 0.611489 | 1:+53622613 | MsaT003223.1:CDS |
ACAGTACTAGTTCCAGGCTG+AGG | 0.619979 | 1:-53621847 | None:intergenic |
TGAGTTATTAGATGATAAGG+AGG | 0.622448 | 1:+53622203 | MsaT003223.1:CDS |
AGGCTTTGAAGGAAAATGGG+TGG | 0.631084 | 1:+53622152 | MsaT003223.1:CDS |
AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 1:+53624028 | MsaT003223.1:CDS |
AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 1:+53623840 | MsaT003223.1:CDS |
TCAATATATCTCGAACCCAA+CGG | 0.634921 | 1:-53622983 | None:intergenic |
TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 1:-53624157 | None:intergenic |
GCCACTTGGAATGTGGATTG+GGG | 0.646236 | 1:+53622620 | MsaT003223.1:CDS |
ACCCCAATCCACATTCCAAG+TGG | 0.654914 | 1:-53622621 | None:intergenic |
ACTTACAGAAGCCATTGCAA+AGG | 0.657210 | 1:+53622889 | MsaT003223.1:CDS |
CATCTTCAAATGTGTGTGAG+TGG | 0.665385 | 1:+53624286 | MsaT003223.1:CDS |
GCGGAACCAATCATGACTCG+CGG | 0.676119 | 1:+53624098 | MsaT003223.1:CDS |
CTCTCATTATGAGACTCACA+GGG | 0.677592 | 1:-53622302 | None:intergenic |
GTTCCTGGATAGGATCACAA+AGG | 0.678518 | 1:+53624251 | MsaT003223.1:intron |
CATCATACCAAAGTTGATGG+TGG | 0.683172 | 1:+53623566 | MsaT003223.1:CDS |
TGTCACGTTCCAAATTGCGG+CGG | 0.703136 | 1:+53624079 | MsaT003223.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 53621724 | 53624374 | 53621724 | ID=MsaG003223 |
Chr1 | mRNA | 53621724 | 53624374 | 53621724 | ID=MsaT003223.1;Parent=MsaG003223 |
Chr1 | exon | 53621724 | 53622725 | 53621724 | ID=MsaT003223.1.exon1;Parent=MsaT003223.1 |
Chr1 | CDS | 53621724 | 53622725 | 53621724 | ID=cds.MsaT003223.1;Parent=MsaT003223.1 |
Chr1 | exon | 53622827 | 53623270 | 53622827 | ID=MsaT003223.1.exon2;Parent=MsaT003223.1 |
Chr1 | CDS | 53622827 | 53623270 | 53622827 | ID=cds.MsaT003223.1;Parent=MsaT003223.1 |
Chr1 | exon | 53623356 | 53624176 | 53623356 | ID=MsaT003223.1.exon3;Parent=MsaT003223.1 |
Chr1 | CDS | 53623356 | 53624176 | 53623356 | ID=cds.MsaT003223.1;Parent=MsaT003223.1 |
Chr1 | exon | 53624263 | 53624374 | 53624263 | ID=MsaT003223.1.exon4;Parent=MsaT003223.1 |
Chr1 | CDS | 53624263 | 53624374 | 53624263 | ID=cds.MsaT003223.1;Parent=MsaT003223.1 |
Gene Sequence |
Protein sequence |