AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003248

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003248 MtrunA17_Chr8g0354661 48.980 98 50 0 8 105 42 139 9.77e-27 102
MsaG003248 MtrunA17_Chr3g0099131 44.898 98 54 0 8 105 46 143 2.31e-24 95.9
MsaG003248 MtrunA17_Chr4g0048511 43.878 98 55 0 8 105 18 115 5.56e-24 93.6
MsaG003248 MtrunA17_Chr8g0349261 46.226 106 56 1 1 105 11 116 1.38e-23 91.7
MsaG003248 MtrunA17_Chr1g0203411 47.475 99 52 0 7 105 16 114 1.42e-23 91.7
MsaG003248 MtrunA17_Chr3g0080861 44.898 98 54 0 8 105 42 139 1.48e-23 93.6
MsaG003248 MtrunA17_Chr3g0103281 43.878 98 55 0 8 105 17 114 5.94e-23 90.5
MsaG003248 MtrunA17_Chr5g0441131 41.176 102 59 1 5 105 11 112 4.30e-22 85.5
MsaG003248 MtrunA17_Chr1g0167661 44.444 99 55 0 7 105 16 114 9.15e-22 85.9
MsaG003248 MtrunA17_Chr2g0281071 43.564 101 57 0 5 105 15 115 1.71e-21 86.7
MsaG003248 MtrunA17_Chr1g0167691 43.878 98 55 0 8 105 17 114 2.01e-21 85.1
MsaG003248 MtrunA17_Chr2g0309911 42.857 98 56 0 8 105 16 113 4.48e-21 85.1
MsaG003248 MtrunA17_Chr5g0400821 43.137 102 57 1 5 105 14 115 6.60e-21 84.7
MsaG003248 MtrunA17_Chr4g0070641 43.158 95 54 0 7 101 16 110 7.35e-21 81.6
MsaG003248 MtrunA17_Chr2g0322521 43.878 98 55 0 8 105 34 131 8.02e-21 85.1
MsaG003248 MtrunA17_Chr8g0343831 41.414 99 58 0 3 101 8 106 8.04e-21 83.6
MsaG003248 MtrunA17_Chr2g0323411 42.574 101 58 0 5 105 14 114 8.90e-21 84.3
MsaG003248 MtrunA17_Chr1g0193371 43.878 98 55 0 8 105 17 114 1.01e-20 84.7
MsaG003248 MtrunA17_Chr4g0039971 42.857 98 56 0 8 105 18 115 1.07e-20 84.7
MsaG003248 MtrunA17_Chr4g0060721 41.748 103 60 0 3 105 13 115 1.90e-20 83.6
MsaG003248 MtrunA17_Chr7g0217741 43.564 101 57 0 5 105 14 114 2.28e-20 83.2
MsaG003248 MtrunA17_Chr6g0453211 42.000 100 58 0 3 102 12 111 2.73e-20 83.2
MsaG003248 MtrunA17_Chr1g0152011 42.308 104 59 1 3 105 12 115 3.07e-20 83.2
MsaG003248 MtrunA17_Chr4g0044421 44.444 99 55 0 7 105 16 114 3.08e-20 80.9
MsaG003248 MtrunA17_Chr1g0187761 43.878 98 55 0 8 105 17 114 3.18e-20 82.0
MsaG003248 MtrunA17_Chr7g0254411 41.748 103 60 0 3 105 12 114 3.28e-20 83.2
MsaG003248 MtrunA17_Chr2g0328771 42.857 98 56 0 8 105 25 122 3.32e-20 82.8
MsaG003248 MtrunA17_Chr3g0092401 41.584 101 59 0 5 105 15 115 3.35e-20 82.8
MsaG003248 MtrunA17_Chr5g0395281 40.594 101 60 0 5 105 14 114 4.60e-20 82.4
MsaG003248 MtrunA17_Chr4g0042671 44.554 101 56 0 5 105 14 114 4.82e-20 83.2
MsaG003248 MtrunA17_Chr1g0168661 44.554 101 56 0 5 105 23 123 6.04e-20 81.3
MsaG003248 MtrunA17_Chr1g0154031 40.816 98 58 0 8 105 81 178 6.57e-20 82.8
MsaG003248 MtrunA17_Chr2g0327351 43.878 98 54 1 5 101 14 111 6.62e-20 82.0
MsaG003248 MtrunA17_Chr4g0028311 43.000 100 56 1 7 105 16 115 8.28e-20 82.0
MsaG003248 MtrunA17_Chr1g0203441 41.837 98 57 0 8 105 18 115 8.81e-20 81.3
MsaG003248 MtrunA17_Chr6g0470971 41.837 98 57 0 8 105 19 116 9.67e-20 81.3
MsaG003248 MtrunA17_Chr4g0070611 43.158 95 54 0 7 101 16 110 1.01e-19 81.3
MsaG003248 MtrunA17_Chr5g0410961 41.748 103 60 0 3 105 12 114 1.10e-19 81.6
MsaG003248 MtrunA17_Chr5g0435101 43.434 99 56 0 3 101 11 109 1.11e-19 79.7
MsaG003248 MtrunA17_Chr4g0072751 42.000 100 57 1 3 101 12 111 1.16e-19 81.6
MsaG003248 MtrunA17_Chr2g0330041 40.816 98 58 0 8 105 17 114 1.36e-19 82.0
MsaG003248 MtrunA17_Chr2g0311221 45.263 95 52 0 7 101 18 112 1.37e-19 81.3
MsaG003248 MtrunA17_Chr4g0032401 41.837 98 57 0 8 105 22 119 1.61e-19 81.3
MsaG003248 MtrunA17_Chr3g0117091 42.857 98 56 0 8 105 17 114 1.64e-19 81.3
MsaG003248 MtrunA17_Chr4g0055981 43.158 95 54 0 7 101 59 153 1.71e-19 79.7
MsaG003248 MtrunA17_Chr4g0022931 43.564 101 57 0 5 105 15 115 2.01e-19 80.1
MsaG003248 MtrunA17_Chr8g0385321 41.584 101 59 0 5 105 14 114 2.05e-19 80.9
MsaG003248 MtrunA17_Chr1g0180391 41.414 99 58 0 3 101 19 117 2.06e-19 79.3
MsaG003248 MtrunA17_Chr3g0115821 40.816 98 58 0 8 105 17 114 2.22e-19 80.9
MsaG003248 MtrunA17_Chr8g0342541 42.000 100 57 1 8 106 17 116 2.27e-19 80.9
MsaG003248 MtrunA17_Chr8g0346561 44.330 97 54 0 5 101 14 110 2.39e-19 80.5
MsaG003248 MtrunA17_Chr1g0211161 42.857 98 56 0 8 105 18 115 2.64e-19 79.0
MsaG003248 MtrunA17_Chr7g0217221 41.584 101 59 0 5 105 14 114 2.68e-19 79.7
MsaG003248 MtrunA17_Chr3g0135311 42.157 102 58 1 5 105 14 115 2.73e-19 80.9
MsaG003248 MtrunA17_Chr2g0327821 41.748 103 60 0 3 105 6 108 2.82e-19 79.3
MsaG003248 MtrunA17_Chr2g0323351 43.000 100 57 0 7 106 16 115 3.23e-19 79.3
MsaG003248 MtrunA17_Chr3g0121241 41.414 99 58 0 7 105 46 144 3.26e-19 80.1
MsaG003248 MtrunA17_Chr8g0387421 40.816 98 58 0 8 105 17 114 3.45e-19 80.1
MsaG003248 MtrunA17_Chr4g0037141 42.574 101 58 0 5 105 14 114 3.48e-19 79.7
MsaG003248 MtrunA17_Chr5g0397231 40.000 95 57 0 8 102 17 111 3.78e-19 80.1
MsaG003248 MtrunA17_Chr7g0275911 41.053 95 56 0 7 101 16 110 4.13e-19 79.0
MsaG003248 MtrunA17_Chr1g0209661 40.816 98 58 0 8 105 32 129 4.26e-19 79.7
MsaG003248 MtrunA17_Chr1g0186061 43.564 101 57 0 5 105 22 122 4.75e-19 79.0
MsaG003248 MtrunA17_Chr1g0194301 40.594 101 60 0 1 101 31 131 5.05e-19 79.3
MsaG003248 MtrunA17_Chr7g0274581 40.187 107 63 1 1 106 10 116 5.18e-19 77.8
MsaG003248 MtrunA17_Chr7g0264641 42.424 99 56 1 8 105 17 115 5.35e-19 79.0
MsaG003248 MtrunA17_Chr4g0054391 41.053 95 55 1 7 100 16 110 5.55e-19 79.3
MsaG003248 MtrunA17_Chr4g0022881 42.268 97 56 0 5 101 14 110 5.68e-19 78.2
MsaG003248 MtrunA17_Chr8g0342521 43.000 100 56 1 8 106 17 116 5.78e-19 79.7
MsaG003248 MtrunA17_Chr3g0088461 44.444 99 53 2 8 105 27 124 5.80e-19 79.7
MsaG003248 MtrunA17_Chr7g0228231 39.806 103 62 0 3 105 14 116 6.12e-19 77.8
MsaG003248 MtrunA17_Chr4g0022891 39.216 102 62 0 3 104 12 113 6.15e-19 78.6
MsaG003248 MtrunA17_Chr7g0228891 43.434 99 56 0 7 105 16 114 6.95e-19 78.6
MsaG003248 MtrunA17_Chr4g0058991 36.893 103 64 1 3 105 207 308 7.23e-19 80.1
MsaG003248 MtrunA17_Chr4g0057031 43.564 101 57 0 5 105 14 114 7.32e-19 78.6
MsaG003248 MtrunA17_Chr4g0068061 41.489 94 55 0 8 101 17 110 7.40e-19 79.3
MsaG003248 MtrunA17_Chr4g0022901 42.574 101 58 0 5 105 15 115 8.82e-19 78.6
MsaG003248 MtrunA17_Chr6g0453471 42.857 98 56 0 8 105 17 114 9.11e-19 79.3
MsaG003248 MtrunA17_Chr7g0270891 42.857 98 56 0 8 105 17 114 9.97e-19 79.3
MsaG003248 MtrunA17_Chr1g0193801 43.878 98 55 0 8 105 17 114 1.04e-18 79.3
MsaG003248 MtrunA17_Chr8g0342481 41.414 99 57 1 8 105 17 115 1.47e-18 79.0
MsaG003248 MtrunA17_Chr3g0131121 42.424 99 57 0 7 105 16 114 1.84e-18 77.8
MsaG003248 MtrunA17_Chr7g0247131 49.367 79 37 1 30 105 2 80 2.08e-18 77.4
MsaG003248 MtrunA17_Chr1g0194951 41.489 94 55 0 8 101 17 110 2.59e-18 78.2
MsaG003248 MtrunA17_Chr3g0117511 36.735 98 61 1 8 105 186 282 3.04e-18 78.2
MsaG003248 MtrunA17_Chr3g0110351 42.424 99 57 0 7 105 16 114 3.06e-18 77.4
MsaG003248 MtrunA17_Chr5g0434571 42.424 99 57 0 7 105 52 150 3.29e-18 77.8
MsaG003248 MtrunA17_Chr4g0058631 41.837 98 57 0 8 105 17 114 3.46e-18 77.8
MsaG003248 MtrunA17_Chr5g0440781 35.644 101 64 1 7 106 16 116 3.87e-18 75.1
MsaG003248 MtrunA17_Chr6g0450101 39.394 99 60 0 3 101 14 112 4.04e-18 75.5
MsaG003248 MtrunA17_Chr1g0194291 39.394 99 60 0 3 101 21 119 4.59e-18 76.3
MsaG003248 MtrunA17_Chr4g0022911 40.404 99 59 0 7 105 17 115 5.54e-18 76.6
MsaG003248 MtrunA17_Chr3g0133601 35.644 101 64 1 5 105 37 136 7.71e-18 75.1
MsaG003248 MtrunA17_Chr5g0434831 39.604 101 60 1 7 106 11 111 8.49e-18 74.3
MsaG003248 MtrunA17_Chr7g0261281 40.000 105 63 0 1 105 10 114 9.11e-18 75.9
MsaG003248 MtrunA17_Chr7g0220341 43.299 97 53 2 7 101 29 125 1.08e-17 75.5
MsaG003248 MtrunA17_Chr6g0452271 40.816 98 58 0 8 105 17 114 1.24e-17 76.3
MsaG003248 MtrunA17_Chr5g0440761 35.644 101 64 1 7 106 16 116 1.65e-17 75.1
MsaG003248 MtrunA17_Chr7g0271241 43.011 93 53 0 8 100 17 109 1.83e-17 75.9
MsaG003248 MtrunA17_Chr5g0441141 35.644 101 64 1 7 106 16 116 1.87e-17 75.1
MsaG003248 MtrunA17_Chr8g0360111 40.206 97 58 0 5 101 27 123 2.08e-17 74.7
MsaG003248 MtrunA17_Chr4g0008551 36.170 94 59 1 8 101 41 133 3.15e-17 75.1
MsaG003248 MtrunA17_Chr7g0240821 41.053 95 56 0 6 100 4 98 6.62e-17 72.8
MsaG003248 MtrunA17_Chr5g0434841 39.604 101 60 1 7 106 24 124 7.39e-17 73.9
MsaG003248 MtrunA17_Chr5g0434931 36.893 103 65 0 3 105 35 137 1.49e-16 72.8
MsaG003248 MtrunA17_Chr7g0228991 38.384 99 61 0 3 101 29 127 1.72e-16 72.4
MsaG003248 MtrunA17_Chr4g0030881 39.815 108 58 1 5 105 9 116 1.78e-16 72.0
MsaG003248 MtrunA17_Chr5g0401731 33.673 98 64 1 8 105 18 114 1.87e-16 72.8
MsaG003248 MtrunA17_Chr5g0417821 38.776 98 60 0 8 105 12 109 3.27e-16 71.6
MsaG003248 MtrunA17_Chr7g0269831 43.617 94 53 0 8 101 17 110 3.80e-16 72.0
MsaG003248 MtrunA17_Chr5g0434911 37.624 101 63 0 5 105 23 123 4.09e-16 71.2
MsaG003248 MtrunA17_Chr1g0192411 38.384 99 61 0 7 105 16 114 4.21e-16 72.0
MsaG003248 MtrunA17_Chr1g0151941 38.000 100 61 1 7 105 16 115 6.28e-16 70.5
MsaG003248 MtrunA17_Chr6g0454921 34.409 93 60 1 8 100 18 109 9.11e-16 69.3
MsaG003248 MtrunA17_Chr5g0397841 36.735 98 61 1 3 100 108 204 1.06e-15 71.2
MsaG003248 MtrunA17_Chr6g0487491 36.111 108 60 2 7 105 16 123 1.28e-15 69.7
MsaG003248 MtrunA17_Chr5g0437321 33.673 98 64 1 4 101 18 114 1.30e-15 70.1
MsaG003248 MtrunA17_Chr7g0238631 34.951 103 66 1 3 105 111 212 1.40e-15 70.9
MsaG003248 MtrunA17_Chr1g0157731 32.039 103 69 1 3 105 89 190 1.51e-15 70.9
MsaG003248 MtrunA17_Chr5g0429661 35.922 103 65 1 3 105 120 221 1.71e-15 70.5
MsaG003248 MtrunA17_Chr2g0293911 39.796 98 59 0 8 105 29 126 2.03e-15 70.1
MsaG003248 MtrunA17_Chr4g0013361 34.906 106 68 1 2 106 9 114 3.30e-15 68.9
MsaG003248 MtrunA17_Chr3g0139671 33.010 103 68 1 3 105 83 184 4.12e-15 69.7
MsaG003248 MtrunA17_Chr8g0334881 33.962 106 69 1 2 106 9 114 4.84e-15 68.9
MsaG003248 MtrunA17_Chr7g0238651 31.000 100 67 1 8 105 10 109 1.04e-14 68.2
MsaG003248 MtrunA17_Chr4g0068921 36.792 106 67 0 1 106 22 127 1.05e-14 66.2
MsaG003248 MtrunA17_Chr4g0053431 32.381 105 70 1 1 105 1 104 2.43e-14 66.6
MsaG003248 MtrunA17_Chr7g0233061 41.791 67 39 0 40 106 212 278 2.63e-14 67.0
MsaG003248 MtrunA17_Chr3g0099141 37.500 80 50 0 8 87 45 124 5.01e-14 63.5
MsaG003248 MtrunA17_Chr7g0228401 35.000 100 63 2 7 106 282 379 7.53e-14 65.9
MsaG003248 MtrunA17_Chr8g0362231 33.000 100 66 1 6 105 23 121 1.98e-13 64.7
MsaG003248 MtrunA17_Chr2g0323321 38.000 100 55 1 7 106 15 107 2.59e-13 60.8
MsaG003248 MtrunA17_Chr5g0416341 33.000 100 66 1 6 105 27 125 3.43e-13 63.9
MsaG003248 MtrunA17_Chr2g0294811 31.111 90 62 0 8 97 17 106 3.57e-13 60.8
MsaG003248 MtrunA17_Chr1g0177901 43.333 60 34 0 47 106 35 94 1.25e-12 61.2
MsaG003248 MtrunA17_Chr7g0228531 32.381 105 69 2 1 105 216 318 4.05e-12 60.8
MsaG003248 MtrunA17_Chr5g0434901 49.091 55 28 0 47 101 17 71 6.87e-12 57.4
MsaG003248 MtrunA17_Chr6g0480581 30.303 99 68 1 8 106 7 104 2.99e-11 57.8
MsaG003248 MtrunA17_Chr7g0229131 47.458 59 31 0 47 105 16 74 3.18e-11 57.0
MsaG003248 MtrunA17_Chr6g0460661 31.068 103 68 2 4 105 15 115 3.19e-11 56.6
MsaG003248 MtrunA17_Chr7g0229101 49.091 55 28 0 47 101 16 70 4.37e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003248 AT5G55020.1 45.455 99 54 0 8 106 31 129 9.32e-26 100
MsaG003248 AT3G11440.2 45.918 98 53 0 8 105 46 143 3.12e-25 98.2
MsaG003248 AT3G11440.3 45.918 98 53 0 8 105 46 143 7.74e-25 97.4
MsaG003248 AT3G11440.4 45.918 98 53 0 8 105 46 143 7.74e-25 97.4
MsaG003248 AT3G11440.1 45.918 98 53 0 8 105 46 143 7.74e-25 97.4
MsaG003248 AT5G06100.1 45.918 98 53 0 8 105 37 134 4.55e-24 95.1
MsaG003248 AT5G56110.1 45.918 98 53 0 8 105 17 114 5.00e-24 93.6
MsaG003248 AT2G32460.2 43.878 98 55 0 8 105 11 108 6.70e-24 94.7
MsaG003248 AT2G32460.1 43.878 98 55 0 8 105 23 120 6.98e-24 94.7
MsaG003248 AT5G06100.5 45.918 98 53 0 8 105 37 134 7.12e-24 94.7
MsaG003248 AT5G06100.2 45.918 98 53 0 8 105 37 134 7.12e-24 94.7
MsaG003248 AT5G06100.3 45.918 98 53 0 8 105 37 134 7.12e-24 94.7
MsaG003248 AT5G06100.4 45.918 98 53 0 8 105 37 134 7.12e-24 94.7
MsaG003248 AT3G61250.1 46.535 101 54 0 5 105 14 114 1.06e-23 92.4
MsaG003248 AT2G26960.1 43.434 99 56 0 8 106 25 123 2.67e-23 92.8
MsaG003248 AT1G22640.1 46.154 104 56 0 2 105 11 114 6.89e-23 89.4
MsaG003248 AT4G21440.1 42.857 98 56 0 8 105 17 114 1.56e-22 89.7
MsaG003248 AT4G26930.1 42.857 98 56 0 8 105 24 121 1.98e-22 90.1
MsaG003248 AT5G52600.1 42.000 100 58 0 2 101 11 110 5.58e-22 85.9
MsaG003248 AT5G10280.1 42.857 98 56 0 8 105 17 114 1.67e-21 87.0
MsaG003248 AT5G59780.3 45.545 101 55 0 5 105 10 110 1.68e-21 85.5
MsaG003248 AT3G46130.1 45.545 101 55 0 5 105 11 111 1.97e-21 85.5
MsaG003248 AT4G34990.1 45.545 101 55 0 5 105 14 114 2.07e-21 85.9
MsaG003248 AT4G37780.1 42.453 106 60 1 1 105 10 115 4.77e-21 85.5
MsaG003248 AT3G27920.1 43.617 94 53 0 8 101 19 112 6.83e-21 83.6
MsaG003248 AT1G18570.1 42.574 101 58 0 5 105 15 115 7.57e-21 85.5
MsaG003248 AT5G26660.1 43.878 98 55 0 8 105 17 114 7.65e-21 85.5
MsaG003248 AT5G14750.1 42.553 94 54 0 8 101 21 114 9.30e-21 82.8
MsaG003248 AT2G26950.1 36.275 102 65 0 5 106 18 119 1.10e-20 85.1
MsaG003248 AT3G13540.1 40.952 105 62 0 1 105 21 125 1.19e-20 83.6
MsaG003248 AT5G15310.4 43.564 101 57 0 5 105 14 114 1.49e-20 83.2
MsaG003248 AT3G01140.2 44.554 101 56 0 5 105 14 114 1.56e-20 84.3
MsaG003248 AT3G01140.1 44.554 101 56 0 5 105 57 157 1.58e-20 84.7
MsaG003248 AT2G16720.1 43.269 104 59 0 2 105 11 114 2.08e-20 83.2
MsaG003248 AT3G13890.2 40.816 98 58 0 8 105 17 114 2.54e-20 84.0
MsaG003248 AT4G17785.2 40.777 103 61 0 3 105 13 115 2.59e-20 84.0
MsaG003248 AT4G17785.1 40.777 103 61 0 3 105 13 115 3.00e-20 84.0
MsaG003248 AT4G01680.3 43.878 98 55 0 8 105 17 114 3.89e-20 82.0
MsaG003248 AT5G15310.2 43.564 101 57 0 5 105 14 114 4.18e-20 82.8
MsaG003248 AT3G47600.1 41.748 103 60 0 3 105 12 114 4.20e-20 83.2
MsaG003248 AT5G15310.1 43.564 101 57 0 5 105 14 114 4.35e-20 83.2
MsaG003248 AT5G12870.1 42.857 98 56 0 8 105 23 120 5.03e-20 82.4
MsaG003248 AT1G74430.1 43.878 98 55 0 8 105 17 114 5.31e-20 82.0
MsaG003248 AT3G28910.1 41.748 103 60 0 3 105 12 114 5.69e-20 82.8
MsaG003248 AT1G08810.1 41.748 103 60 0 3 105 12 114 5.76e-20 82.0
MsaG003248 AT5G54230.1 41.748 103 60 0 3 105 12 114 5.81e-20 82.8
MsaG003248 AT3G24310.1 44.554 101 56 0 5 105 20 120 6.57e-20 81.6
MsaG003248 AT5G40330.1 41.489 94 55 0 8 101 17 110 7.11e-20 80.9
MsaG003248 AT3G12820.1 43.434 99 56 0 7 105 18 116 7.24e-20 81.3
MsaG003248 AT1G25340.1 40.816 98 58 0 8 105 23 120 7.30e-20 82.0
MsaG003248 AT1G74650.1 40.952 105 62 0 1 105 10 114 7.39e-20 82.4
MsaG003248 AT5G61420.2 39.604 101 61 0 5 105 14 114 7.41e-20 82.8
MsaG003248 AT5G62470.1 42.718 103 58 1 3 105 12 113 8.74e-20 82.4
MsaG003248 AT5G62470.2 41.748 103 60 0 3 105 12 114 8.99e-20 82.4
MsaG003248 AT1G35515.1 41.346 104 61 0 2 105 11 114 9.97e-20 80.1
MsaG003248 AT4G05100.1 41.584 101 59 0 5 105 15 115 1.03e-19 82.0
MsaG003248 AT1G74080.1 40.594 101 60 0 5 105 14 114 1.12e-19 82.0
MsaG003248 AT5G35550.1 41.414 99 58 0 7 105 18 116 1.22e-19 80.9
MsaG003248 AT3G49690.1 42.308 104 59 1 3 105 12 115 1.27e-19 81.6
MsaG003248 AT1G34670.1 41.837 98 57 0 8 105 17 114 1.28e-19 82.0
MsaG003248 AT2G47460.1 42.553 94 54 0 8 101 17 110 1.29e-19 82.0
MsaG003248 AT1G16490.1 43.878 98 55 0 8 105 19 116 1.30e-19 80.9
MsaG003248 AT1G63910.1 40.816 98 58 0 8 105 17 114 1.47e-19 82.0
MsaG003248 AT5G65230.1 42.574 101 58 0 5 105 14 114 1.82e-19 81.3
MsaG003248 AT4G09460.1 42.574 101 58 0 5 105 14 114 2.09e-19 79.7
MsaG003248 AT4G01680.1 43.878 98 55 0 8 105 17 114 2.17e-19 81.3
MsaG003248 AT1G57560.2 41.837 98 57 0 8 105 17 114 2.22e-19 80.5
MsaG003248 AT4G12350.1 42.857 105 60 0 1 105 10 114 2.33e-19 80.5
MsaG003248 AT4G22680.1 43.564 101 57 0 5 105 14 114 2.38e-19 80.1
MsaG003248 AT3G02940.2 42.424 99 57 0 7 105 16 114 2.43e-19 80.9
MsaG003248 AT3G02940.1 42.574 101 58 0 5 105 14 114 2.85e-19 80.9
MsaG003248 AT3G02940.3 42.574 101 58 0 5 105 14 114 2.85e-19 80.9
MsaG003248 AT5G07700.1 38.614 101 62 0 5 105 14 114 2.93e-19 80.9
MsaG003248 AT5G07700.2 38.614 101 62 0 5 105 14 114 2.93e-19 80.9
MsaG003248 AT1G56160.1 43.434 99 56 0 7 105 18 116 2.94e-19 80.5
MsaG003248 AT3G30210.1 42.574 101 58 0 5 105 29 129 3.28e-19 80.1
MsaG003248 AT5G65790.1 41.346 104 60 1 3 105 12 115 3.47e-19 80.9
MsaG003248 AT1G57560.1 41.837 98 57 0 8 105 17 114 4.59e-19 80.1
MsaG003248 AT4G28110.1 38.835 103 63 0 3 105 12 114 5.20e-19 79.7
MsaG003248 AT4G38620.1 44.330 97 54 0 5 101 14 110 5.36e-19 79.7
MsaG003248 AT2G47190.1 39.806 103 62 0 3 105 20 122 6.54e-19 79.3
MsaG003248 AT5G16770.4 41.584 101 59 0 5 105 14 114 7.59e-19 79.7
MsaG003248 AT5G16770.3 41.584 101 59 0 5 105 14 114 7.59e-19 79.7
MsaG003248 AT5G49330.1 42.553 94 54 0 8 101 17 110 7.71e-19 79.7
MsaG003248 AT3G08500.1 42.857 98 56 0 8 105 35 132 7.85e-19 79.7
MsaG003248 AT5G16770.1 41.584 101 59 0 5 105 14 114 8.31e-19 79.7
MsaG003248 AT5G16770.2 41.584 101 59 0 5 105 14 114 8.31e-19 79.7
MsaG003248 AT1G09540.1 42.857 98 56 0 8 105 17 114 8.35e-19 79.7
MsaG003248 AT3G01530.1 39.394 99 60 0 3 101 25 123 9.06e-19 77.8
MsaG003248 AT5G52260.1 43.878 98 55 0 8 105 17 114 9.79e-19 78.6
MsaG003248 AT3G48920.1 41.837 98 57 0 8 105 23 120 1.04e-18 78.6
MsaG003248 AT4G13480.1 42.574 101 58 0 5 105 8 108 1.22e-18 78.2
MsaG003248 AT3G62610.1 40.404 99 59 0 3 101 12 110 1.50e-18 79.0
MsaG003248 AT4G25560.1 41.837 98 57 0 8 105 15 112 1.60e-18 78.2
MsaG003248 AT3G23250.1 40.000 105 63 0 1 105 10 114 1.62e-18 78.2
MsaG003248 AT2G31180.1 40.000 105 63 0 1 105 10 114 1.74e-18 77.8
MsaG003248 AT1G68320.1 39.796 98 59 0 8 105 24 121 2.16e-18 77.8
MsaG003248 AT3G12720.1 38.776 98 60 0 8 105 27 124 2.24e-18 78.2
MsaG003248 AT1G79180.1 42.424 99 57 0 7 105 18 116 2.39e-18 77.8
MsaG003248 AT5G26660.2 55.072 69 31 0 37 105 15 83 2.55e-18 78.2
MsaG003248 AT1G18710.1 38.776 98 60 0 8 105 17 114 3.17e-18 77.4
MsaG003248 AT3G27810.1 37.864 103 64 0 3 105 20 122 3.91e-18 76.3
MsaG003248 AT5G07690.1 39.216 102 62 0 5 106 14 115 4.27e-18 77.8
MsaG003248 AT4G32730.5 36.893 103 64 1 3 105 85 186 4.46e-18 78.6
MsaG003248 AT4G32730.4 36.893 103 64 1 3 105 85 186 4.46e-18 78.6
MsaG003248 AT4G32730.3 36.893 103 64 1 3 105 85 186 4.46e-18 78.6
MsaG003248 AT4G32730.2 36.893 103 64 1 3 105 85 186 4.46e-18 78.6
MsaG003248 AT3G28470.1 40.426 94 56 0 8 101 17 110 5.19e-18 77.4
MsaG003248 AT1G66230.1 41.414 99 58 0 7 105 16 114 5.58e-18 76.6
MsaG003248 AT1G06180.1 40.816 98 58 0 8 105 17 114 6.35e-18 76.3
MsaG003248 AT5G16600.1 43.564 101 57 0 5 105 14 114 7.04e-18 77.0
MsaG003248 AT5G60890.1 41.748 103 60 0 3 105 12 114 9.39e-18 76.3
MsaG003248 AT4G32730.1 36.893 103 64 1 3 105 85 186 1.07e-17 77.4
MsaG003248 AT1G48000.1 38.776 98 60 0 8 105 37 134 1.12e-17 75.5
MsaG003248 AT5G40350.1 38.384 99 61 0 3 101 17 115 1.17e-17 74.7
MsaG003248 AT5G14340.1 41.414 99 58 0 7 105 28 126 1.33e-17 75.9
MsaG003248 AT4G18770.1 36.893 103 64 1 3 105 215 316 1.43e-17 76.6
MsaG003248 AT3G13890.1 37.383 107 58 1 8 105 17 123 1.50e-17 76.6
MsaG003248 AT5G23000.1 41.000 100 58 1 7 105 16 115 1.66e-17 75.9
MsaG003248 AT5G57620.1 40.385 104 61 1 3 105 12 115 2.51e-17 75.5
MsaG003248 AT5G11510.3 35.922 103 65 1 3 105 79 180 2.54e-17 76.3
MsaG003248 AT5G11510.1 35.922 103 65 1 3 105 79 180 2.54e-17 76.3
MsaG003248 AT5G11510.4 35.922 103 65 1 3 105 79 180 2.54e-17 76.3
MsaG003248 AT5G11510.2 35.922 103 65 1 3 105 79 180 3.32e-17 75.9
MsaG003248 AT5G40360.1 37.500 104 64 1 3 106 156 258 3.55e-17 75.5
MsaG003248 AT1G25340.2 39.604 101 56 1 5 105 20 115 4.04e-17 74.3
MsaG003248 AT5G11510.5 35.922 103 65 1 3 105 79 180 4.23e-17 75.5
MsaG003248 AT1G25340.3 39.796 98 54 1 8 105 23 115 5.08e-17 74.7
MsaG003248 AT5G02320.1 34.951 103 66 1 3 105 125 226 6.80e-17 75.1
MsaG003248 AT5G02320.2 34.951 103 66 1 3 105 125 226 6.80e-17 75.1
MsaG003248 AT2G36890.1 41.000 100 58 1 7 105 16 115 7.00e-17 73.9
MsaG003248 AT2G36890.2 41.000 100 58 1 7 105 57 156 9.80e-17 73.9
MsaG003248 AT3G27785.1 39.423 104 60 2 3 105 187 288 1.06e-16 74.3
MsaG003248 AT5G02320.3 34.951 103 66 1 3 105 65 166 1.51e-16 73.9
MsaG003248 AT3G09230.1 37.234 94 58 1 8 101 58 150 1.77e-16 73.6
MsaG003248 AT5G62320.1 39.815 108 58 1 5 105 15 122 2.14e-16 72.0
MsaG003248 AT4G01680.2 53.623 69 32 0 37 105 58 126 2.44e-16 73.2
MsaG003248 AT5G58850.1 34.951 103 66 1 3 105 103 204 2.61e-16 73.2
MsaG003248 AT1G66370.1 38.947 95 58 0 7 101 12 106 4.06e-16 71.2
MsaG003248 AT3G55730.1 38.298 94 57 1 8 101 59 151 4.28e-16 72.4
MsaG003248 AT3G60460.1 35.238 105 67 1 3 106 11 115 8.68e-16 71.2
MsaG003248 AT3G53200.1 38.776 98 60 0 8 105 14 111 9.94e-16 70.1
MsaG003248 AT3G09370.3 34.951 103 66 1 3 105 141 242 1.11e-15 71.6
MsaG003248 AT3G09370.2 34.951 103 66 1 3 105 133 234 1.31e-15 71.2
MsaG003248 AT3G09370.1 34.951 103 66 1 3 105 128 229 1.42e-15 71.2
MsaG003248 AT5G11050.1 35.922 103 65 1 3 105 103 204 1.53e-15 70.9
MsaG003248 AT2G25230.1 35.577 104 66 1 3 106 24 126 2.13e-15 69.3
MsaG003248 AT3G06490.1 40.000 105 63 0 1 105 17 121 2.71e-15 70.1
MsaG003248 AT2G39880.1 38.298 94 57 1 8 101 53 145 2.89e-15 70.1
MsaG003248 AT2G02820.2 33.000 100 66 1 6 105 31 129 4.12e-15 69.7
MsaG003248 AT2G02820.1 33.000 100 66 1 6 105 31 129 6.42e-15 69.3
MsaG003248 AT2G23290.1 34.286 105 68 1 1 105 9 112 7.85e-15 68.6
MsaG003248 AT5G14750.3 54.545 55 25 0 47 101 26 80 1.00e-14 66.2
MsaG003248 AT5G67300.1 33.663 101 66 1 5 105 6 105 1.26e-14 68.2
MsaG003248 AT3G47600.2 55.932 59 26 0 47 105 50 108 1.27e-14 68.2
MsaG003248 AT3G46130.3 47.887 71 37 0 35 105 9 79 1.51e-14 67.0
MsaG003248 AT5G35550.2 47.826 69 36 0 37 105 51 119 1.62e-14 67.4
MsaG003248 AT3G46130.4 49.275 69 35 0 37 105 21 89 1.80e-14 66.6
MsaG003248 AT5G59780.2 49.275 69 35 0 37 105 21 89 1.92e-14 66.2
MsaG003248 AT1G66380.1 40.206 97 58 0 5 101 10 106 2.17e-14 64.7
MsaG003248 AT4G37260.1 32.381 105 70 1 1 105 9 112 2.20e-14 67.4
MsaG003248 AT5G49620.1 38.095 105 65 0 1 105 24 128 2.60e-14 67.0
MsaG003248 AT2G02820.3 33.000 100 66 1 6 105 31 129 3.06e-14 67.0
MsaG003248 AT3G53200.2 46.377 69 37 0 37 105 10 78 3.78e-14 65.5
MsaG003248 AT1G71030.1 41.026 78 45 1 28 105 6 82 4.40e-14 65.1
MsaG003248 AT1G71030.2 44.928 69 37 1 37 105 1 68 6.81e-14 64.3
MsaG003248 AT5G40430.1 34.615 104 66 2 3 106 52 153 7.05e-14 65.5
MsaG003248 AT3G12820.2 54.237 59 27 0 47 105 10 68 9.91e-14 64.3
MsaG003248 AT1G14350.2 32.000 100 67 1 6 105 26 124 1.02e-13 65.9
MsaG003248 AT1G14350.1 32.000 100 67 1 6 105 26 124 1.02e-13 65.9
MsaG003248 AT3G50060.1 32.353 102 68 1 4 105 5 105 2.35e-13 64.3
MsaG003248 AT1G22640.3 55.357 56 25 0 50 105 2 57 2.37e-13 63.2
MsaG003248 AT4G33450.1 34.043 94 61 1 8 101 22 114 2.48e-13 63.9
MsaG003248 AT5G14750.4 51.786 56 27 0 50 105 2 57 2.97e-13 62.0
MsaG003248 AT5G14750.2 51.786 56 27 0 50 105 2 57 2.97e-13 62.0
MsaG003248 AT1G56650.1 38.947 95 58 0 7 101 12 106 6.71e-13 62.8
MsaG003248 AT4G00540.1 35.577 104 63 2 5 105 101 203 7.04e-13 63.5
MsaG003248 AT4G00540.2 35.577 104 63 2 5 105 103 205 7.38e-13 63.5
MsaG003248 AT3G27810.2 44.928 69 38 0 37 105 5 73 7.47e-13 61.6
MsaG003248 AT1G79180.2 52.542 59 28 0 47 105 91 149 1.08e-12 62.8
MsaG003248 AT5G40350.2 46.154 65 35 0 37 101 6 70 1.67e-12 60.5
MsaG003248 AT1G66390.1 39.175 97 59 0 5 101 10 106 2.24e-12 61.2
MsaG003248 AT2G37630.1 29.000 100 69 1 8 105 7 106 1.22e-11 60.1
MsaG003248 AT1G17950.1 31.683 101 68 1 1 101 1 100 1.70e-11 58.9
MsaG003248 AT1G18960.1 37.624 101 60 2 5 105 10 107 3.98e-11 58.2
MsaG003248 AT1G69560.2 31.183 93 63 1 8 100 126 217 7.69e-11 57.8
MsaG003248 AT5G49620.2 33.613 119 65 1 1 105 24 142 8.18e-11 57.4
MsaG003248 AT3G23250.2 50.000 56 28 0 50 105 2 57 8.26e-11 57.0

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATTCCATTAAAATTTAT+TGG 0.165190 1:-53900952 MsaT003248.1:CDS
TAAAAGAGCGTGGACTTTAC+AGG 0.289074 1:-53901315 MsaT003248.1:intron
TTAAAATTTATTGGAATACA+TGG 0.398376 1:-53900943 MsaT003248.1:CDS
TGTTTCCTCGTTGGCATCAA+AGG 0.399980 1:+53901148 None:intergenic
CACATTCTCCAGTATGTTGT+AGG 0.418140 1:+53901219 None:intergenic
ATGCAGCTTCCAGGCCGATC+AGG 0.438084 1:-53900974 MsaT003248.1:intron
AAGGGCCCTGTCTTCAAACC+TGG 0.463397 1:+53901167 None:intergenic
CTCCGCCCAGGTTTGAAGAC+AGG 0.466135 1:-53901173 MsaT003248.1:CDS
GTTTCCTCGTTGGCATCAAA+GGG 0.474169 1:+53901149 None:intergenic
AACATACTGGAGAATGTGGC+TGG 0.485380 1:-53901214 MsaT003248.1:CDS
GACACGAGCCTACAACATAC+TGG 0.508300 1:-53901227 MsaT003248.1:CDS
TGTAAACAACACGCAGCTCT+AGG 0.516136 1:-53901119 MsaT003248.1:CDS
CAGGAGGACAATCTGTTGAA+AGG 0.523173 1:-53901296 MsaT003248.1:CDS
ATGGAATTACCTGATCGGCC+TGG 0.526795 1:+53900965 None:intergenic
ACAGATCAGTGTTTCCTCGT+TGG 0.528620 1:+53901139 None:intergenic
GAATTGGAAATTCCTTCAGC+GGG 0.530854 1:-53901249 MsaT003248.1:CDS
GTAGGCTCGTGTCCCGCTGA+AGG 0.531529 1:+53901237 None:intergenic
ACGCAGCTCTAGGAAATCGC+TGG 0.560123 1:-53901109 MsaT003248.1:CDS
AGGGCCCTGTCTTCAAACCT+GGG 0.564909 1:+53901168 None:intergenic
GAACATCTTGCAGATATACA+TGG 0.568033 1:+53901409 None:intergenic
CATACTGGAGAATGTGGCTG+GGG 0.587020 1:-53901212 MsaT003248.1:CDS
TCCGCCCAGGTTTGAAGACA+GGG 0.592883 1:-53901172 MsaT003248.1:CDS
ACATACTGGAGAATGTGGCT+GGG 0.595637 1:-53901213 MsaT003248.1:CDS
CTACAACATACTGGAGAATG+TGG 0.602375 1:-53901218 MsaT003248.1:CDS
TGGCACGATTATCTCCGCCC+AGG 0.613914 1:-53901185 MsaT003248.1:CDS
AGAATTGGAAATTCCTTCAG+CGG 0.617192 1:-53901250 MsaT003248.1:CDS
AACATCTTGCAGATATACAT+GGG 0.640898 1:+53901410 None:intergenic
GCCCTGTCTTCAAACCTGGG+CGG 0.681570 1:+53901171 None:intergenic
AAGAGCGTGGACTTTACAGG+AGG 0.683958 1:-53901312 MsaT003248.1:CDS
ATACTGGAGAATGTGGCTGG+GGG 0.714709 1:-53901211 MsaT003248.1:CDS
AGGGCCCTTTGATGCCAACG+AGG 0.728345 1:-53901153 MsaT003248.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 53900928 53901429 53900928 ID=MsaG003248
Chr1 mRNA 53900928 53901429 53900928 ID=MsaT003248.1;Parent=MsaG003248
Chr1 exon 53900928 53900990 53900928 ID=MsaT003248.1.exon3;Parent=MsaT003248.1
Chr1 CDS 53900928 53900990 53900928 ID=cds.MsaT003248.1;Parent=MsaT003248.1
Chr1 exon 53901091 53901331 53901091 ID=MsaT003248.1.exon2;Parent=MsaT003248.1
Chr1 CDS 53901091 53901331 53901091 ID=cds.MsaT003248.1;Parent=MsaT003248.1
Chr1 exon 53901413 53901429 53901413 ID=MsaT003248.1.exon1;Parent=MsaT003248.1
Chr1 CDS 53901413 53901429 53901413 ID=cds.MsaT003248.1;Parent=MsaT003248.1
Gene Sequence

>MsaT003248.1

ATGTATATCTGCAAGATAGCGTGGACTTTACAGGAGGACAATCTGTTGAAAGGTTTTGTAGAGAAAAACAAAGGGAAGAATTGGAAATTCCTTCAGCGGGACACGAGCCTACAACATACTGGAGAATGTGGCTGGGGGCGTTGGCACGATTATCTCCGCCCAGGTTTGAAGACAGGGCCCTTTGATGCCAACGAGGAAACACTGATCTGTAAACAACACGCAGCTCTAGGAAATCGCTGGATAGAAATAGCAAAAATGCTTCCAGGCCGATCAGGTAATTCCATTAAAATTTATTGGAATACATGGAAAAAAAAGGTGTAA
Protein sequence

>MsaT003248.1

MYICKIAWTLQEDNLLKGFVEKNKGKNWKFLQRDTSLQHTGECGWGRWHDYLRPGLKTGPFDANEETLICKQHAALGNRWIEIAKMLPGRSGNSIKIYWNTWKKKV*