AlfalfaGEDB | MsaG003248

M. sativa ssp. caerulea / MsaG003248

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003248	XP_040380052.1	48.980	98	50	0	8	105	48	145	7.73e-24	105

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003248	sp\|Q94FL7\|MY120_ARATH	45.455	99	54	0	8	106	31	129	9.17e-25	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003248	tr\|A0A287G2L6\|A0A287G2L6_HORVV	46.939	98	52	0	8	105	45	142	3.69e-23	102

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003248	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003248	MtrunA17_Chr8g0354661	48.980	98	50	0	8	105	42	139	9.77e-27	102
MsaG003248	MtrunA17_Chr3g0099131	44.898	98	54	0	8	105	46	143	2.31e-24	95.9
MsaG003248	MtrunA17_Chr4g0048511	43.878	98	55	0	8	105	18	115	5.56e-24	93.6
MsaG003248	MtrunA17_Chr8g0349261	46.226	106	56	1	1	105	11	116	1.38e-23	91.7
MsaG003248	MtrunA17_Chr1g0203411	47.475	99	52	0	7	105	16	114	1.42e-23	91.7
MsaG003248	MtrunA17_Chr3g0080861	44.898	98	54	0	8	105	42	139	1.48e-23	93.6
MsaG003248	MtrunA17_Chr3g0103281	43.878	98	55	0	8	105	17	114	5.94e-23	90.5
MsaG003248	MtrunA17_Chr5g0441131	41.176	102	59	1	5	105	11	112	4.30e-22	85.5
MsaG003248	MtrunA17_Chr1g0167661	44.444	99	55	0	7	105	16	114	9.15e-22	85.9
MsaG003248	MtrunA17_Chr2g0281071	43.564	101	57	0	5	105	15	115	1.71e-21	86.7

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003248	AT5G55020.1	45.455	99	54	8	106	31	129	9.32e-26	100
MsaG003248	AT3G11440.2	45.918	98	53	8	105	46	143	3.12e-25	98.2
MsaG003248	AT3G11440.3	45.918	98	53	8	105	46	143	7.74e-25	97.4
MsaG003248	AT3G11440.4	45.918	98	53	8	105	46	143	7.74e-25	97.4
MsaG003248	AT3G11440.1	45.918	98	53	8	105	46	143	7.74e-25	97.4
MsaG003248	AT5G06100.1	45.918	98	53	8	105	37	134	4.55e-24	95.1
MsaG003248	AT5G56110.1	45.918	98	53	8	105	17	114	5.00e-24	93.6
MsaG003248	AT2G32460.2	43.878	98	55	8	105	11	108	6.70e-24	94.7
MsaG003248	AT2G32460.1	43.878	98	55	8	105	23	120	6.98e-24	94.7
MsaG003248	AT5G06100.5	45.918	98	53	8	105	37	134	7.12e-24	94.7

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Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATACTGGAGAATGTGGC+TGG	0.485380	1:-53901214	MsaT003248.1:CDS
AACATCTTGCAGATATACAT+GGG	0.640898	1:+53901410	None:intergenic
AAGAGCGTGGACTTTACAGG+AGG	0.683958	1:-53901312	MsaT003248.1:CDS
AAGGGCCCTGTCTTCAAACC+TGG	0.463397	1:+53901167	None:intergenic
ACAGATCAGTGTTTCCTCGT+TGG	0.528620	1:+53901139	None:intergenic
ACATACTGGAGAATGTGGCT+GGG	0.595637	1:-53901213	MsaT003248.1:CDS
ACGCAGCTCTAGGAAATCGC+TGG	0.560123	1:-53901109	MsaT003248.1:CDS
AGAATTGGAAATTCCTTCAG+CGG	0.617192	1:-53901250	MsaT003248.1:CDS
AGGGCCCTGTCTTCAAACCT+GGG	0.564909	1:+53901168	None:intergenic
AGGGCCCTTTGATGCCAACG+AGG	0.728345	1:-53901153	MsaT003248.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	53900928	53901429	53900928	ID=MsaG003248
Chr1	mRNA	53900928	53901429	53900928	ID=MsaT003248.1;Parent=MsaG003248
Chr1	exon	53900928	53900990	53900928	ID=MsaT003248.1.exon3;Parent=MsaT003248.1
Chr1	CDS	53900928	53900990	53900928	ID=cds.MsaT003248.1;Parent=MsaT003248.1
Chr1	exon	53901091	53901331	53901091	ID=MsaT003248.1.exon2;Parent=MsaT003248.1
Chr1	CDS	53901091	53901331	53901091	ID=cds.MsaT003248.1;Parent=MsaT003248.1
Chr1	exon	53901413	53901429	53901413	ID=MsaT003248.1.exon1;Parent=MsaT003248.1
Chr1	CDS	53901413	53901429	53901413	ID=cds.MsaT003248.1;Parent=MsaT003248.1

Gene Sequence	>MsaT003248.1 ATGTATATCTGCAAGATAGCGTGGACTTTACAGGAGGACAATCTGTTGAAAGGTTTTGTAGAGAAAAACAAAGGGAAGAATTGGAAATTCCTTCAGCGGGACACGAGCCTACAACATACTGGAGAATGTGGCTGGGGGCGTTGGCACGATTATCTCCGCCCAGGTTTGAAGACAGGGCCCTTTGATGCCAACGAGGAAACACTGATCTGTAAACAACACGCAGCTCTAGGAAATCGCTGGATAGAAATAGCAAAAATGCTTCCAGGCCGATCAGGTAATTCCATTAAAATTTATTGGAATACATGGAAAAAAAAGGTGTAA
Protein sequence	>MsaT003248.1 MYICKIAWTLQEDNLLKGFVEKNKGKNWKFLQRDTSLQHTGECGWGRWHDYLRPGLKTGPFDANEETLICKQHAALGNRWIEIAKMLPGRSGNSIKIYWNTWKKKV*