AlfalfaGEDB | MsaG003265

M. sativa ssp. caerulea / MsaG003265

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032259 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0071704 GO:0080188 GO:0090304 GO:1901360
PFAM: PF10440.12

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003265	XP_013468439.1	96.260	722	27	0	1	722	1	722	0.0	1451

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003265	sp\|Q9FNC7\|SUVR2_ARATH	40.445	764	325	23	5	722	3	682	7.87e-159	480

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003265	tr\|A0A072VLI9\|A0A072VLI9_MEDTR	96.260	722	27	0	1	722	1	722	0.0	1451

TFs/TRs:

Gene ID	Type	Classification
MsaG003265	TR	SET

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002700	MsaG003265	0.833740	8.136409e-56	2.625030e-53
MsaG002758	MsaG003265	0.806792	1.174776e-49	1.857550e-47
MsaG003043	MsaG003265	0.833473	9.479456e-56	3.034414e-53
MsaG003265	MsaG004802	0.835847	2.414138e-56	8.294035e-54
MsaG003265	MsaG005098	0.807265	9.341418e-50	1.493590e-47
MsaG003265	MsaG005707	0.803481	5.749948e-49	8.415620e-47
MsaG003265	MsaG006188	0.837538	8.987680e-57	3.250042e-54
MsaG003265	MsaG006279	0.811750	1.027812e-50	1.831921e-48
MsaG003265	MsaG006832	0.904015	4.471824e-79	2.902113e-75
MsaG003265	MsaG008253	0.815580	1.489031e-51	2.920980e-49
MsaG003265	MsaG008419	0.802333	9.904083e-49	1.411815e-46
MsaG003265	MsaG009109	0.810450	1.960887e-50	3.385638e-48
MsaG003265	MsaG009580	0.836532	1.620439e-56	5.683059e-54
MsaG003265	MsaG010646	0.817289	6.196180e-52	1.269857e-49
MsaG003265	MsaG010958	0.884511	3.871948e-71	8.659047e-68
MsaG003265	MsaG011507	0.822453	4.141426e-53	9.721434e-51
MsaG003265	MsaG012185	0.924079	2.981472e-89	7.598379e-85
MsaG003265	MsaG014087	0.815788	1.338837e-51	2.640222e-49
MsaG003265	MsaG015664	0.818493	3.323841e-52	7.026391e-50
MsaG003265	MsaG016420	0.815506	1.546395e-51	3.027752e-49
MsaG003265	MsaG016670	0.830876	4.131575e-55	1.226091e-52
MsaG003265	MsaG017241	0.824111	1.704986e-53	4.186125e-51
MsaG003265	MsaG017522	0.828199	1.836395e-54	5.049969e-52
MsaG003265	MsaG017623	0.863567	4.514234e-64	4.028873e-61
MsaG003265	MsaG017881	0.910255	5.560829e-82	5.338501e-78
MsaG003265	MsaG019164	0.806607	1.284961e-49	2.023010e-47
MsaG003265	MsaG019416	0.803394	5.992125e-49	8.752547e-47
MsaG003265	MsaG020341	0.826919	3.712995e-54	9.850699e-52
MsaG003265	MsaG022105	0.846713	3.441626e-59	1.669240e-56
MsaG003265	MsaG022106	0.827995	2.055546e-54	5.620331e-52
MsaG003265	MsaG022205	0.844015	1.835235e-58	8.140899e-56
MsaG003265	MsaG023726	0.854300	2.602112e-61	1.639686e-58
MsaG003265	MsaG023847	0.811772	1.016741e-50	1.813157e-48
MsaG003265	MsaG024363	0.806888	1.121502e-49	1.777286e-47
MsaG003265	MsaG025064	0.830829	4.242778e-55	1.257349e-52
MsaG003265	MsaG025778	0.811225	1.334867e-50	2.348792e-48
MsaG003265	MsaG025949	0.828585	1.482961e-54	4.122596e-52
MsaG003265	MsaG028082	0.849204	7.131076e-60	3.761646e-57
MsaG003265	MsaG028565	0.836208	1.956374e-56	6.795015e-54
MsaG003265	MsaG028652	0.820359	1.253541e-52	2.783361e-50
MsaG003265	MsaG028784	0.847349	2.308813e-59	1.143881e-56
MsaG003265	MsaG029094	0.842473	4.708950e-58	1.988201e-55
MsaG003265	MsaG029279	0.914702	3.484758e-84	4.506118e-80
MsaG003265	MsaG029301	0.847178	2.571188e-59	1.266636e-56
MsaG003265	MsaG029746	0.842293	5.253428e-58	2.205124e-55
MsaG003265	MsaG030321	0.819960	1.545219e-52	3.395007e-50
MsaG003265	MsaG032184	0.816371	9.936583e-52	1.988826e-49
MsaG003265	MsaG033280	0.912268	5.793176e-83	6.352938e-79
MsaG003265	MsaG033710	0.835410	3.110376e-56	1.054715e-53
MsaG003265	MsaG033895	0.847041	2.801684e-59	1.373845e-56
MsaG003265	MsaG034021	0.885226	2.102860e-71	4.871031e-68
MsaG003265	MsaG036039	0.812487	7.111073e-51	1.290758e-48
MsaG003265	MsaG037003	0.846289	4.487566e-59	2.145949e-56
MsaG003265	MsaG037470	0.860238	4.668716e-63	3.663477e-60
MsaG003265	MsaG038018	0.802404	9.575238e-49	1.367175e-46
MsaG003265	MsaG039168	0.862058	1.311231e-63	1.102970e-60
MsaG003265	MsaG040486	0.802785	7.998547e-49	1.151988e-46
MsaG003265	MsaG041274	0.826594	4.434379e-54	1.165845e-51
MsaG003265	MsaG041694	0.884122	5.384162e-71	1.181820e-67
MsaG003265	MsaG042516	0.816825	7.867251e-52	1.593107e-49
MsaG003265	MsaG043122	0.828320	1.717299e-54	4.738536e-52
MsaG003265	MsaG045937	0.814193	3.013486e-51	5.708123e-49
MsaG003265	MsaG046073	0.886717	5.815799e-72	1.449925e-68
MsaG003265	MsaG046305	0.886857	5.147431e-72	1.292029e-68
MsaG003265	MsaG004914	0.866045	7.615579e-65	7.501897e-62
MsaG003265	MsaG005679	0.907043	1.847489e-80	1.443514e-76
MsaG003265	MsaG013013	0.839939	2.168316e-57	8.448477e-55
MsaG003265	MsaG018476	0.835026	3.885114e-56	1.302417e-53
MsaG003265	MsaG019926	0.864304	2.668758e-64	2.452417e-61
MsaG003265	MsaG019850	0.875285	7.205239e-68	1.049246e-64
MsaG003265	MsaG027739	0.847883	1.648928e-59	8.318392e-57
MsaG003265	MsaG029558	0.826861	3.831749e-54	1.014945e-51
MsaG003265	MsaG027614	0.848781	9.334063e-60	4.852721e-57
MsaG003265	MsaG028631	0.809053	3.901734e-50	6.512737e-48
MsaG003265	MsaG030720	0.879568	2.360452e-69	4.176631e-66
MsaG003265	MsaG032666	0.865982	7.969186e-65	7.830578e-62
MsaG003265	MsaG030834	0.817123	6.749867e-52	1.377422e-49
MsaG003265	MsaG030259	0.814794	2.221267e-51	4.271703e-49
MsaG003265	MsaG031555	0.863895	3.573338e-64	3.230317e-61
MsaG003265	MsaG032992	0.869317	6.877244e-66	7.744605e-63
MsaG003265	MsaG032829	0.818940	2.634089e-52	5.633871e-50
MsaG003265	MsaG036525	0.835164	3.587362e-56	1.207498e-53
MsaG003265	MsaG035088	0.873720	2.434723e-67	3.310373e-64
MsaG003265	MsaG036727	0.808157	6.051670e-50	9.885379e-48
MsaG003265	MsaG041261	0.891243	1.048832e-73	3.298865e-70

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003265	MtrunA17_Chr1g0183321	96.260	722	27	0	1	722	1	722	0.0	1451
MsaG003265	MtrunA17_Chr7g0262001	49.665	747	272	21	5	720	3	676	0.0	603
MsaG003265	MtrunA17_Chr1g0190311	59.740	308	119	5	418	722	315	620	1.24e-131	405
MsaG003265	MtrunA17_Chr1g0190311	47.945	73	34	2	6	74	4	76	1.70e-11	67.8
MsaG003265	MtrunA17_Chr8g0392541	50.698	215	82	6	418	629	106	299	1.74e-62	211
MsaG003265	MtrunA17_Chr5g0399801	29.934	304	146	10	428	718	809	1058	1.74e-29	125
MsaG003265	MtrunA17_Chr7g0255181	29.739	306	143	8	430	722	436	682	2.13e-28	121
MsaG003265	MtrunA17_Chr8g0373821	38.750	160	91	4	561	718	361	515	3.38e-28	119
MsaG003265	MtrunA17_Chr3g0080761	28.205	312	156	9	428	721	374	635	1.06e-26	116
MsaG003265	MtrunA17_Chr8g0354821	28.247	308	156	9	428	720	401	658	8.38e-26	113
MsaG003265	MtrunA17_Chr5g0403241	36.364	165	100	4	561	723	1327	1488	2.82e-25	112
MsaG003265	MtrunA17_Chr4g0003511	28.616	318	150	13	428	727	772	1030	7.62e-25	110
MsaG003265	MtrunA17_Chr4g0003501	28.707	317	145	13	428	725	677	931	1.32e-24	110
MsaG003265	MtrunA17_Chr4g0075321	37.126	167	96	5	561	723	884	1045	1.72e-24	110
MsaG003265	MtrunA17_Chr1g0170651	29.073	313	148	11	428	733	293	538	2.84e-21	98.6
MsaG003265	MtrunA17_Chr6g0476111	27.528	356	181	11	395	727	371	672	3.32e-21	99.0
MsaG003265	MtrunA17_Chr7g0252211	32.632	190	102	4	559	727	551	735	6.08e-21	98.2
MsaG003265	MtrunA17_Chr8g0368901	26.688	311	148	12	430	720	507	757	1.08e-20	97.4
MsaG003265	MtrunA17_Chr6g0476121	26.966	356	183	11	395	727	320	621	9.69e-20	94.0
MsaG003265	MtrunA17_Chr8g0368911	25.150	334	162	13	430	735	500	773	1.09e-19	94.4
MsaG003265	MtrunA17_Chr1g0163051	25.080	311	153	11	430	720	396	646	1.87e-18	90.1
MsaG003265	MtrunA17_Chr6g0460921	32.500	160	102	3	563	719	241	397	4.56e-18	87.4
MsaG003265	MtrunA17_Chr6g0467381	29.545	176	109	4	559	721	392	565	7.70e-18	87.8
MsaG003265	MtrunA17_Chr6g0467531	29.545	176	109	4	559	721	392	565	7.77e-18	87.8
MsaG003265	MtrunA17_Chr6g0467421	29.545	176	109	4	559	721	392	565	9.10e-18	87.4
MsaG003265	MtrunA17_Chr6g0467411	29.545	176	109	4	559	721	310	483	1.78e-17	86.3
MsaG003265	MtrunA17_Chr6g0467401	28.977	176	110	4	559	721	392	565	1.55e-16	83.6
MsaG003265	MtrunA17_Chr2g0306961	28.736	174	109	4	561	721	293	464	9.38e-16	80.5
MsaG003265	MtrunA17_Chr7g0232981	31.548	168	94	6	568	718	322	485	6.30e-14	75.1
MsaG003265	MtrunA17_Chr1g0201621	30.000	160	84	5	569	722	67	204	6.16e-13	72.0
MsaG003265	MtrunA17_Chr7g0232841	29.744	195	77	8	568	718	319	497	1.02e-12	71.2
MsaG003265	MtrunA17_Chr1g0201311	29.375	160	85	5	569	722	67	204	2.92e-12	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003265	AT5G43990.3	40.445	764	325	23	5	722	3	682	8.00e-160	480
MsaG003265	AT5G43990.11	40.445	764	325	23	5	722	3	682	8.00e-160	480
MsaG003265	AT5G43990.1	40.445	764	325	23	5	722	3	682	8.00e-160	480
MsaG003265	AT5G43990.4	40.445	764	325	23	5	722	3	682	8.00e-160	480
MsaG003265	AT5G43990.9	40.445	764	325	23	5	722	26	705	2.70e-159	479
MsaG003265	AT5G43990.2	40.445	764	325	23	5	722	26	705	2.70e-159	479
MsaG003265	AT5G43990.16	40.562	747	328	21	5	722	3	662	1.57e-156	471
MsaG003265	AT5G43990.5	40.562	747	328	21	5	722	3	662	1.57e-156	471
MsaG003265	AT5G43990.17	40.562	747	328	21	5	722	3	662	1.57e-156	471
MsaG003265	AT5G43990.14	40.562	747	328	21	5	722	3	662	1.57e-156	471
MsaG003265	AT5G43990.15	40.562	747	328	21	5	722	26	685	3.93e-156	470
MsaG003265	AT5G43990.10	40.562	747	328	21	5	722	26	685	3.93e-156	470
MsaG003265	AT5G43990.8	40.145	690	297	22	63	722	10	613	3.68e-140	427
MsaG003265	AT5G43990.12	40.145	690	297	22	63	722	10	613	3.68e-140	427
MsaG003265	AT5G43990.6	40.145	690	297	22	63	722	10	613	3.68e-140	427
MsaG003265	AT5G43990.13	40.145	690	297	22	63	722	10	613	3.68e-140	427
MsaG003265	AT5G43990.7	40.267	673	300	20	63	722	10	593	2.31e-137	419
MsaG003265	AT3G04380.2	52.695	334	151	7	393	722	81	411	3.13e-117	361
MsaG003265	AT3G04380.6	52.695	334	151	7	393	722	81	411	4.56e-117	360
MsaG003265	AT3G04380.1	53.704	324	143	7	403	722	118	438	4.65e-117	362
MsaG003265	AT3G04380.3	53.704	324	143	7	403	722	102	422	6.16e-117	361
MsaG003265	AT3G04380.5	52.695	334	151	7	393	722	65	395	8.26e-117	359
MsaG003265	AT3G04380.4	53.704	324	143	7	403	722	118	438	9.54e-117	361
MsaG003265	AT1G04050.3	54.829	321	135	6	406	722	281	595	1.00e-113	357
MsaG003265	AT1G04050.3	31.977	172	95	7	228	380	176	344	1.59e-11	68.2
MsaG003265	AT1G04050.2	54.829	321	135	6	406	722	385	699	5.41e-113	359
MsaG003265	AT1G04050.2	31.977	172	95	7	228	380	280	448	1.53e-11	68.6
MsaG003265	AT1G04050.1	54.829	321	135	6	406	722	385	699	5.41e-113	359
MsaG003265	AT1G04050.1	31.977	172	95	7	228	380	280	448	1.53e-11	68.6
MsaG003265	AT2G23740.3	41.875	160	88	4	562	719	1200	1356	4.08e-28	122
MsaG003265	AT2G23740.6	41.875	160	88	4	562	719	1200	1356	4.08e-28	122
MsaG003265	AT2G23740.2	41.875	160	88	4	562	719	1200	1356	4.08e-28	122
MsaG003265	AT2G23740.1	41.875	160	88	4	562	719	1193	1349	4.14e-28	122
MsaG003265	AT1G73100.1	31.148	305	145	12	430	720	386	639	8.37e-26	113
MsaG003265	AT2G35160.5	29.066	289	137	10	430	718	507	727	4.32e-24	108
MsaG003265	AT2G35160.2	29.066	289	137	10	430	718	543	763	4.33e-24	108
MsaG003265	AT2G35160.3	29.066	289	137	10	430	718	543	763	4.33e-24	108
MsaG003265	AT2G35160.1	29.066	289	137	10	430	718	543	763	4.33e-24	108
MsaG003265	AT2G35160.4	29.066	289	137	10	430	718	543	763	4.33e-24	108
MsaG003265	AT2G22740.2	28.146	302	153	9	430	718	509	759	2.58e-22	103
MsaG003265	AT2G22740.1	28.146	302	153	9	430	718	509	759	2.58e-22	103
MsaG003265	AT5G04940.2	27.869	305	154	11	430	720	388	640	4.61e-22	102
MsaG003265	AT5G04940.1	27.869	305	154	11	430	720	388	640	4.61e-22	102
MsaG003265	AT2G23740.4	43.220	118	63	3	562	677	1200	1315	1.09e-20	98.2
MsaG003265	AT2G23740.5	43.220	118	63	3	562	677	1200	1315	1.09e-20	98.2
MsaG003265	AT1G17770.1	33.523	176	105	5	558	723	491	664	1.20e-20	97.4
MsaG003265	AT3G03750.2	34.940	166	87	6	564	719	169	323	1.87e-20	94.4
MsaG003265	AT4G13460.1	26.791	321	154	15	421	720	378	638	3.01e-18	89.7
MsaG003265	AT4G13460.2	26.791	321	154	15	421	720	378	638	3.01e-18	89.7
MsaG003265	AT2G33290.1	25.484	310	154	11	430	720	388	639	4.11e-16	82.8
MsaG003265	AT2G33290.3	25.484	310	154	11	430	720	388	639	4.11e-16	82.8
MsaG003265	AT2G33290.4	25.484	310	154	11	430	720	388	639	4.11e-16	82.8
MsaG003265	AT2G33290.2	25.484	310	154	11	430	720	388	639	4.11e-16	82.8
MsaG003265	AT2G24740.1	31.098	164	100	5	571	723	566	727	2.01e-14	77.8
MsaG003265	AT1G76710.2	29.375	160	85	5	569	722	72	209	9.15e-14	75.1
MsaG003265	AT1G76710.1	29.375	160	85	5	569	722	72	209	9.15e-14	75.1
MsaG003265	AT1G76710.4	29.375	160	85	5	569	722	72	209	1.28e-13	74.7
MsaG003265	AT1G76710.3	29.375	160	85	5	569	722	72	209	1.38e-13	74.3

Find 177 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCATGCGCTGCTATGTTTC+TGG	0.156141	1:-54125725	None:intergenic
CCTCTCATGCAACTCTTTAA+TGG	0.157207	1:-54124343	None:intergenic
CTATGTTTCTGGTGGTAAAA+AGG	0.198580	1:-54125714	None:intergenic
GAGCTGCAGCTCAGCTCTTC+AGG	0.210314	1:+54123008	MsaT003265.1:CDS
ACTACTAAACTGAGTGAATT+TGG	0.220484	1:-54123474	None:intergenic
AGAGAACTATAGAGCTTTAT+TGG	0.221245	1:+54121548	MsaT003265.1:CDS
TCATCAACGGGCTCAGATTT+AGG	0.222684	1:-54122124	None:intergenic
ACATTTCTCTATCTCGTATT+GGG	0.243654	1:+54123673	MsaT003265.1:CDS
AACATGAAATGTGCTGAAAA+TGG	0.265651	1:+54124366	MsaT003265.1:CDS
CTCCAGGCAATGACAGAGTT+TGG	0.318416	1:+54121447	MsaT003265.1:CDS
CCACTTCTTTACGTGTGTTA+TGG	0.320200	1:-54122933	None:intergenic
TCTGGACACTCAATTTGAAT+TGG	0.327457	1:-54125554	None:intergenic
GAATAGCGCCTTAAGCTTGA+TGG	0.331994	1:-54122853	None:intergenic
CTCTGATGGGCTGGTGAAAA+GGG	0.332393	1:-54123357	None:intergenic
AACATTTCTCTATCTCGTAT+TGG	0.338243	1:+54123672	MsaT003265.1:CDS
TGTGCCTGTACATATAAAAC+TGG	0.340913	1:+54123750	MsaT003265.1:CDS
TTGAAAAGATTGAGATTAAG+AGG	0.343197	1:+54121884	MsaT003265.1:CDS
CATCTCGGAACACAAGGTTT+TGG	0.345064	1:-54123641	None:intergenic
CTCTTCAAGTGTCCTTTACA+TGG	0.346446	1:-54123918	None:intergenic
CATTGTGGGCAGTAAGGATT+TGG	0.349231	1:+54123263	MsaT003265.1:CDS
TACAGCTCAAGGCCTAATTA+AGG	0.350606	1:+54123788	MsaT003265.1:CDS
GTCAAAGAGTGATGGTTGTT+TGG	0.362693	1:+54123893	MsaT003265.1:CDS
CTGGACACTCAATTTGAATT+GGG	0.363904	1:-54125553	None:intergenic
GAAAGTTTATTAAAGAATGT+TGG	0.367343	1:+54123940	MsaT003265.1:CDS
TGCTTAGATGCAGCGTCCTT+TGG	0.374054	1:+54124459	MsaT003265.1:CDS
ATGGTGTTTCTGCAGGATTA+TGG	0.382711	1:+54126103	MsaT003265.1:intron
CACTCCGCATCCAGTAGAAC+TGG	0.383967	1:-54124402	None:intergenic
TGAGTAGGCATGCGGAAATC+TGG	0.394448	1:-54123033	None:intergenic
GCTCTGATGGGCTGGTGAAA+AGG	0.396124	1:-54123358	None:intergenic
ACCAGCCCATCAGAGCAGTT+TGG	0.397557	1:+54123365	MsaT003265.1:CDS
GATGACACTGCGTTGTTTCG+AGG	0.400594	1:-54122001	None:intergenic
TCCAGGCAATGACAGAGTTT+GGG	0.403416	1:+54121448	MsaT003265.1:CDS
TACTGGTTTCCGAGATGAAC+AGG	0.403963	1:+54123397	MsaT003265.1:CDS
TCTATGTGAGACTTCTTCAA+TGG	0.406075	1:-54121941	None:intergenic
CAGATGTTCTGATGCAAACT+TGG	0.408144	1:+54125523	MsaT003265.1:intron
AAGAGAATAATCAAATTTCA+TGG	0.413531	1:+54123568	MsaT003265.1:CDS
GCATTTGTGTGTGAGTTTGC+TGG	0.417110	1:+54124309	MsaT003265.1:CDS
CAGCGCATGAAGAGCTCACT+TGG	0.418578	1:+54125737	MsaT003265.1:CDS
TCACACACAAATGCTCCTTT+TGG	0.419691	1:-54124300	None:intergenic
ATCTACTTACCCAGTTCTAC+TGG	0.430711	1:+54124392	MsaT003265.1:CDS
TGGAATAACATACAACTTGC+AGG	0.432287	1:+54124010	MsaT003265.1:CDS
AGTCTACAGAAGATCGTATA+AGG	0.434173	1:+54123511	MsaT003265.1:CDS
TCCTGAAGCAAAAGTGAAAC+GGG	0.434933	1:+54121473	MsaT003265.1:CDS
CTATGTGAGACTTCTTCAAT+GGG	0.437903	1:-54121940	None:intergenic
CATCATCCAAACTGCTCTGA+TGG	0.438786	1:-54123371	None:intergenic
ATGGGGACTTCGTACCTTAG+AGG	0.440946	1:+54124272	MsaT003265.1:CDS
ATGCAGAACCATCAAGCTTA+AGG	0.443752	1:+54122845	MsaT003265.1:intron
CAAGCTTAAGGCGCTATTCA+AGG	0.444240	1:+54122857	MsaT003265.1:CDS
TCCAAACTGCTCTGATGGGC+TGG	0.448015	1:-54123366	None:intergenic
CAGTTTGGATGATGCTGTAC+TGG	0.448999	1:+54123380	MsaT003265.1:CDS
GAGGACAGTTGTTCCTGTAT+AGG	0.451056	1:+54123699	MsaT003265.1:CDS
ACGGGTTCTCACTCATCAAA+TGG	0.451201	1:+54123288	MsaT003265.1:CDS
TCCTTACTGCCCACAATGGC+GGG	0.451219	1:-54123258	None:intergenic
TCATAATCTTCCTCATCAAC+GGG	0.455912	1:-54122136	None:intergenic
TCCCAAACTCTGTCATTGCC+TGG	0.460190	1:-54121449	None:intergenic
GATGGCACACCCGCCATTGT+GGG	0.460269	1:+54123249	MsaT003265.1:CDS
GCCATCAACCTCAGATTCCT+TGG	0.460375	1:-54123232	None:intergenic
AACATTTAACGGAGCATCCT+CGG	0.461944	1:-54121846	None:intergenic
AGCTGCAGCTCAGCTCTTCA+GGG	0.466371	1:+54123009	MsaT003265.1:CDS
CAGTAAAAGCAATGCTGTTG+AGG	0.466634	1:-54123849	None:intergenic
TTGGATGCTATATTTGAAGA+AGG	0.467640	1:+54121567	MsaT003265.1:CDS
TCCGAGATGAACAGGACAAT+TGG	0.468652	1:+54123405	MsaT003265.1:CDS
CAAGATGCAACTTCCTATAC+AGG	0.475226	1:-54123712	None:intergenic
TAAGAAGCATGCGGTGATGC+AGG	0.478397	1:-54122088	None:intergenic
TGGGGTATGTAGTTGAAAGG+TGG	0.478541	1:-54123621	None:intergenic
TTTGGAGACACGGGATCCTC+CGG	0.478825	1:-54123456	None:intergenic
TGTGATAGCCTCTTCAGCTC+AGG	0.484761	1:+54122966	MsaT003265.1:CDS
AGAACAACTTCTAAAGATGA+TGG	0.485289	1:+54123056	MsaT003265.1:CDS
ACAGTTTGACAGGTTGATCA+TGG	0.487440	1:-54126140	None:intergenic
CGAGCAGATTCAACATTTAA+CGG	0.488022	1:-54121857	None:intergenic
ACCCGCCATTGTGGGCAGTA+AGG	0.490950	1:+54123257	MsaT003265.1:CDS
ACATGATAGTAGTAACGATC+TGG	0.492019	1:-54125572	None:intergenic
TTTAGAAGTTGTTCTTGAGT+AGG	0.492209	1:-54123048	None:intergenic
ATGGGGAAGAAGCTGAGCTA+GGG	0.492408	1:-54121922	None:intergenic
GGAAGAAGAGATGGAGGCCG+AGG	0.496811	1:+54121829	MsaT003265.1:intron
TACTTCTCCCTGAGCTGAAG+AGG	0.498970	1:-54122974	None:intergenic
GAAGAAGTCTCACATAGAAA+AGG	0.499568	1:+54121946	MsaT003265.1:CDS
TTCCTGAAGCAAAAGTGAAA+CGG	0.501547	1:+54121472	MsaT003265.1:CDS
GATGTTAGTGACCTTACAAA+AGG	0.503486	1:+54123543	MsaT003265.1:CDS
TGCGAGATGCTAGTTATGAC+AGG	0.503811	1:+54122056	MsaT003265.1:CDS
AATGGGGAAGAAGCTGAGCT+AGG	0.506879	1:-54121923	None:intergenic
TGATGGCACACCCGCCATTG+TGG	0.514482	1:+54123248	MsaT003265.1:CDS
ACATGAAATGTGCTGAAAAT+GGG	0.514519	1:+54124367	MsaT003265.1:CDS
CTCATAATCTTCCTCATCAA+CGG	0.516381	1:-54122137	None:intergenic
GGCAGTAAGGATTTGGACAC+GGG	0.517393	1:+54123270	MsaT003265.1:CDS
TTGCACTGGAACAGTTTGAC+AGG	0.517685	1:-54126150	None:intergenic
GAAAAGGACACAGCACTTGA+AGG	0.519631	1:+54121962	MsaT003265.1:CDS
TCTATCTCGTATTGGGGCTG+AGG	0.521876	1:+54123680	MsaT003265.1:CDS
TTGCTAGATTTATCAATCAC+AGG	0.526124	1:+54124487	MsaT003265.1:CDS
TCACTCTTTGACCTTTCAAG+TGG	0.526254	1:-54123882	None:intergenic
AGTTCTACTGGATGCGGAGT+GGG	0.529585	1:+54124404	MsaT003265.1:CDS
CACATCCGAAGGAAAAGGAT+GGG	0.533153	1:+54124254	MsaT003265.1:CDS
AATGTGGCAGTAAGTTCTGC+AGG	0.533366	1:+54126172	MsaT003265.1:CDS
ACTTACTGCCACATTTGCAC+TGG	0.535307	1:-54126164	None:intergenic
ATCATCCAAACTGCTCTGAT+GGG	0.536390	1:-54123370	None:intergenic
ACCAATTGTCCTGTTCATCT+CGG	0.540540	1:-54123406	None:intergenic
GCAAAGATTGTCCACTTGAA+AGG	0.541466	1:+54123871	MsaT003265.1:CDS
TGCATTCTAACATCACTTTG+TGG	0.547428	1:-54123432	None:intergenic
CAGAAGCATCTCGGAACACA+AGG	0.547625	1:-54123647	None:intergenic
TTACGTGTGTTATGGTGTGA+TGG	0.548330	1:-54122925	None:intergenic
CATTTCTCTATCTCGTATTG+GGG	0.549601	1:+54123674	MsaT003265.1:CDS
AAACTCTGTCATTGCCTGGA+GGG	0.550126	1:-54121445	None:intergenic
ATCCTTACTGCCCACAATGG+CGG	0.550791	1:-54123259	None:intergenic
TCACATCCGAAGGAAAAGGA+TGG	0.551509	1:+54124253	MsaT003265.1:CDS
AGGCGCTATTCAAGGAAGAA+TGG	0.557745	1:+54122865	MsaT003265.1:CDS
CCATTAAAGAGTTGCATGAG+AGG	0.561929	1:+54124343	MsaT003265.1:CDS
TGAGCGGCGTCCCCTTGCAA+TGG	0.562017	1:+54122156	MsaT003265.1:CDS
GGTATGTAGTTGAAAGGTGG+TGG	0.563966	1:-54123618	None:intergenic
GTTATGGTGTGATGGTGTCA+TGG	0.564381	1:-54122917	None:intergenic
AAGTGATGTTAGAATGCAGC+CGG	0.565115	1:+54123437	MsaT003265.1:CDS
TTATACGATCTTCTGTAGAC+TGG	0.565319	1:-54123509	None:intergenic
ATATAACCAGGAAGAAGAGA+TGG	0.566148	1:+54121820	MsaT003265.1:intron
AGAGAATAATCAAATTTCAT+GGG	0.566667	1:+54123569	MsaT003265.1:CDS
AGTAAAAGCAATGCTGTTGA+GGG	0.566678	1:-54123848	None:intergenic
GTGATGGTGTCATGGAGACA+TGG	0.568469	1:-54122909	None:intergenic
ACCTTAGAGGAACTGCCAAA+AGG	0.569461	1:+54124285	MsaT003265.1:CDS
TGTTGGAGCAAATGTGGCTG+TGG	0.569633	1:+54123957	MsaT003265.1:CDS
GTGCCTGTACATATAAAACT+GGG	0.569930	1:+54123751	MsaT003265.1:CDS
AAATTTGCATATACAGCTCA+AGG	0.570666	1:+54123777	MsaT003265.1:CDS
CAGTGTCATCTGATGTGAAT+GGG	0.571710	1:+54122014	MsaT003265.1:CDS
TCTGCCTTGGTTTCACCTCG+AGG	0.574171	1:+54123333	MsaT003265.1:CDS
ATCAAGCATAGATGTGTCCA+AGG	0.576306	1:+54123215	MsaT003265.1:CDS
TAAATCTGAGCCCGTTGATG+AGG	0.579697	1:+54122126	MsaT003265.1:CDS
TCTGATGGGCTGGTGAAAAG+GGG	0.580258	1:-54123356	None:intergenic
CCATAACACACGTAAAGAAG+TGG	0.582122	1:+54122933	MsaT003265.1:CDS
AAATGTTAACAGAAGCATCT+CGG	0.583016	1:-54123656	None:intergenic
GTGGGATTCAACATTTGTGA+AGG	0.586586	1:+54124422	MsaT003265.1:CDS
CTGAGTGAATTTGGAGACAC+GGG	0.587085	1:-54123465	None:intergenic
GTGATAGCCTCTTCAGCTCA+GGG	0.595212	1:+54122967	MsaT003265.1:CDS
AAATCTAGCAATGTTGCCAA+AGG	0.600969	1:-54124475	None:intergenic
GGGCAGTAAGGATTTGGACA+CGG	0.606855	1:+54123269	MsaT003265.1:CDS
GTCATAACTAGCATCTCGCA+TGG	0.608733	1:-54122053	None:intergenic
TTACCCAGTTCTACTGGATG+CGG	0.610406	1:+54124398	MsaT003265.1:CDS
AGATATATGTGATTGCATGT+TGG	0.610959	1:+54123143	MsaT003265.1:CDS
TCAAACGATAACTCACAAGA+AGG	0.613211	1:+54123180	MsaT003265.1:CDS
TCCAAGGAATCTGAGGTTGA+TGG	0.617576	1:+54123231	MsaT003265.1:CDS
CTTGAAAGGTCAAAGAGTGA+TGG	0.617940	1:+54123885	MsaT003265.1:CDS
GCAGTGTCATCTGATGTGAA+TGG	0.620539	1:+54122013	MsaT003265.1:CDS
TCATAACTAGCATCTCGCAT+GGG	0.621862	1:-54122052	None:intergenic
AGATGTGTCCAAGGAATCTG+AGG	0.622003	1:+54123224	MsaT003265.1:CDS
ACATCCGAAGGAAAAGGATG+GGG	0.623345	1:+54124255	MsaT003265.1:CDS
GGTTGTTTGGAACCATGTAA+AGG	0.624624	1:+54123906	MsaT003265.1:CDS
CAGTTCTACTGGATGCGGAG+TGG	0.627446	1:+54124403	MsaT003265.1:CDS
AAACTGTTCCAGTGCAAATG+TGG	0.628078	1:+54126156	MsaT003265.1:CDS
CAAATCCTTACTGCCCACAA+TGG	0.629154	1:-54123262	None:intergenic
GCTGGTGAAAAGGGGCCTCG+AGG	0.629263	1:-54123348	None:intergenic
AGTTGTATGTTATTCCACGC+TGG	0.629403	1:-54124004	None:intergenic
AAAGAATGTTGGAGCAAATG+TGG	0.629844	1:+54123951	MsaT003265.1:CDS
GCGAGATGCTAGTTATGACA+GGG	0.630984	1:+54122057	MsaT003265.1:CDS
ATGCGCTGCTATGTTTCTGG+TGG	0.632146	1:-54125722	None:intergenic
TGGGGAAGAAGCTGAGCTAG+GGG	0.632319	1:-54121921	None:intergenic
AACGGGCTCAGATTTAGGTA+CGG	0.633960	1:-54122119	None:intergenic
TCTTCTGTAGACTGGTGATG+TGG	0.636889	1:-54123501	None:intergenic
CAAACTCTGTCATTGCCTGG+AGG	0.639593	1:-54121446	None:intergenic
ACTGATTATAAATGGCGCCA+AGG	0.643115	1:+54121400	None:intergenic
GTTGTTCTTGAGTAGGCATG+CGG	0.647576	1:-54123041	None:intergenic
AGCGCATGAAGAGCTCACTT+GGG	0.648600	1:+54125738	MsaT003265.1:CDS
AATGGTGTTACTGAAAAGCA+AGG	0.651736	1:+54122883	MsaT003265.1:CDS
TGTCATCTGATGTGAATGGG+AGG	0.652442	1:+54122017	MsaT003265.1:CDS
TGATGGTGTCATGGAGACAT+GGG	0.657309	1:-54122908	None:intergenic
ACTGAGTGAATTTGGAGACA+CGG	0.658366	1:-54123466	None:intergenic
ACTCCGCATCCAGTAGAACT+GGG	0.662392	1:-54124401	None:intergenic
ACAACTTCTAAAGATGATGG+AGG	0.666072	1:+54123059	MsaT003265.1:CDS
GCCTGTACATATAAAACTGG+GGG	0.669381	1:+54123753	MsaT003265.1:CDS
TAACCAGGAAGAAGAGATGG+AGG	0.670725	1:+54121823	MsaT003265.1:intron
GTTGGAGCAAATGTGGCTGT+GGG	0.672821	1:+54123958	MsaT003265.1:CDS
TGCCTGTACATATAAAACTG+GGG	0.672868	1:+54123752	MsaT003265.1:CDS
TGATGTTAGAATGCAGCCGG+AGG	0.679721	1:+54123440	MsaT003265.1:CDS
TGTGGCTGTGGGAAACAATG+TGG	0.681976	1:+54123969	MsaT003265.1:CDS
GTCATCTGATGTGAATGGGA+GGG	0.682522	1:+54122018	MsaT003265.1:CDS
AAGGACACAGCACTTGAAGG+CGG	0.696062	1:+54121965	MsaT003265.1:CDS
GGAAATCGCGTTATCCAGCG+TGG	0.696912	1:+54123990	MsaT003265.1:CDS
GTCAATTCATAAGAAGCATG+CGG	0.698287	1:-54122097	None:intergenic
GGGGCCTCGAGGTGAAACCA+AGG	0.711820	1:-54123337	None:intergenic
CGAGATGCTAGTTATGACAG+GGG	0.714402	1:+54122058	MsaT003265.1:CDS
TTGATGAGGAAGATTATGAG+CGG	0.719615	1:+54122140	MsaT003265.1:CDS
TATGTGAGACTTCTTCAATG+GGG	0.720248	1:-54121939	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	54121411	54126201	54121411	ID=MsaG003265
Chr1	mRNA	54121411	54126201	54121411	ID=MsaT003265.1;Parent=MsaG003265
Chr1	exon	54121411	54121602	54121411	ID=MsaT003265.1.exon1;Parent=MsaT003265.1
Chr1	CDS	54121411	54121602	54121411	ID=cds.MsaT003265.1;Parent=MsaT003265.1
Chr1	exon	54121691	54121726	54121691	ID=MsaT003265.1.exon2;Parent=MsaT003265.1
Chr1	CDS	54121691	54121726	54121691	ID=cds.MsaT003265.1;Parent=MsaT003265.1
Chr1	exon	54121830	54122187	54121830	ID=MsaT003265.1.exon3;Parent=MsaT003265.1
Chr1	CDS	54121830	54122187	54121830	ID=cds.MsaT003265.1;Parent=MsaT003265.1
Chr1	exon	54122851	54124031	54122851	ID=MsaT003265.1.exon4;Parent=MsaT003265.1
Chr1	CDS	54122851	54124031	54122851	ID=cds.MsaT003265.1;Parent=MsaT003265.1
Chr1	exon	54124246	54124508	54124246	ID=MsaT003265.1.exon5;Parent=MsaT003265.1
Chr1	CDS	54124246	54124508	54124246	ID=cds.MsaT003265.1;Parent=MsaT003265.1
Chr1	exon	54125526	54125592	54125526	ID=MsaT003265.1.exon6;Parent=MsaT003265.1
Chr1	CDS	54125526	54125592	54125526	ID=cds.MsaT003265.1;Parent=MsaT003265.1
Chr1	exon	54125709	54125759	54125709	ID=MsaT003265.1.exon7;Parent=MsaT003265.1
Chr1	CDS	54125709	54125759	54125709	ID=cds.MsaT003265.1;Parent=MsaT003265.1
Chr1	exon	54126118	54126201	54126118	ID=MsaT003265.1.exon8;Parent=MsaT003265.1
Chr1	CDS	54126118	54126201	54126118	ID=cds.MsaT003265.1;Parent=MsaT003265.1

Gene Sequence

>MsaT003265.1

ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCCTCCAGGCAATGACAGAGTTTGGGATTCCTGAAGCAAAAGTGAAACGGGCGCTAAAGAAACTCCTTAAGTTGTTTGATAAAAACTGGCAACTTATCGAGGAAGAGAACTATAGAGCTTTATTGGATGCTATATTTGAAGAAGGCGATGATTTTGAGGAGCCAGAACCACAAAAGAAAAACAAGAGAGTGAATGAAGAAGAGATGGAGGCCGAGGATGCTCCGTTAAATGTTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCATTGAAGAAGTCTCACATAGAAAAGGACACAGCACTTGAAGGCGGCTCTTCACAGCAGCCTCGAAACAACGCAGTGTCATCTGATGTGAATGGGAGGGTTGCAGCACGTCCCATGCGAGATGCTAGTTATGACAGGGGAAAGCAACCTGCATCACCGCATGCTTCTTATGAATTGACCGTACCTAAATCTGAGCCCGTTGATGAGGAAGATTATGAGCGGCGTCCCCTTGCAATGGTTCCCCCTGAACCATCAAGCTTAAGGCGCTATTCAAGGAAGAATGGTGTTACTGAAAAGCAAGGTGCCCATGTCTCCATGACACCATCACACCATAACACACGTAAAGAAGTGGTTTCTGATGTTGTGATAGCCTCTTCAGCTCAGGGAGAAGTAAAACTCTCTCTGAGCTGCAGCTCAGCTCTTCAGGGACCAGATTTCCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATCATCGACCCAAATTTTTCTGTCGGAAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTTAGTACTGATTCAAACGATAACTCACAAGAAGGTTCAATGTCAAAATCAAGCATAGATGTGTCCAAGGAATCTGAGGTTGATGGCACACCCGCCATTGTGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCACCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCGAGATGAACAGGACAATTGGTATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCACTCAGTTTAGTAGTTGTTCCACATCACCAGTCTACAGAAGATCGTATAAGGTCTTATCATGATGTTAGTGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCATCTACTAACGACTTTCCACCACCTTTCAACTACATACCCCAAAACCTTGTGTTCCGAGATGCTTCTGTTAACATTTCTCTATCTCGTATTGGGGCTGAGGACAGTTGTTCCTGTATAGGAAGTTGCATCTTGTTGTCAGACACACATTGTGCCTGTACATATAAAACTGGGGGCAAATTTGCATATACAGCTCAAGGCCTAATTAAGGAAGAATTTTTGGAAGAGTGTATTGCTATCAGTCACAACCCTCAACAGCATTGCTTTTACTGCAAAGATTGTCCACTTGAAAGGTCAAAGAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGAAATCGCGTTATCCAGCGTGGAATAACATACAACTTGCAGGTATTTTTCACATCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGAACTGCCAAAAGGAGCATTTGTGTGTGAGTTTGCTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGTGCTGAAAATGGGAAATCTACTTACCCAGTTCTACTGGATGCGGAGTGGGATTCAACATTTGTGAAGGATGAAGAAGCTCTATGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATTGAGTGTCCAGATCGTTACTACTATCATTTTGCCCTTTTTACCACCAGAAACATAGCAGCGCATGAAGAGCTCACTTGGGATTATGGCATTGACTTTGTGACCATGATCAACCTGTCAAACTGTTCCAGTGCAAATGTGGCAGTAAGTTCTGCAGGAATATGA

Protein sequence

>MsaT003265.1

MAPRPNPKIAAALQAMTEFGIPEAKVKRALKKLLKLFDKNWQLIEEENYRALLDAIFEEGDDFEEPEPQKKNKRVNEEEMEAEDAPLNVESARPLKRLRLRGQENNSPSSASSPLKKSHIEKDTALEGGSSQQPRNNAVSSDVNGRVAARPMRDASYDRGKQPASPHASYELTVPKSEPVDEEDYERRPLAMVPPEPSSLRRYSRKNGVTEKQGAHVSMTPSHHNTRKEVVSDVVIASSAQGEVKLSLSCSSALQGPDFRMPTQEQLLKMMEDKCLRSYKIIDPNFSVGKMLRDICDCMLEFSTDSNDNSQEGSMSKSSIDVSKESEVDGTPAIVGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSEMNRTIGIPQSDVRMQPEDPVSPNSLSLVVVPHHQSTEDRIRSYHDVSDLTKGEENNQISWVNESSTNDFPPPFNYIPQNLVFRDASVNISLSRIGAEDSCSCIGSCILLSDTHCACTYKTGGKFAYTAQGLIKEEFLEECIAISHNPQQHCFYCKDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEGKGWGLRTLEELPKGAFVCEFAGEILTIKELHERNMKCAENGKSTYPVLLDAEWDSTFVKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQIECPDRYYYHFALFTTRNIAAHEELTWDYGIDFVTMINLSNCSSANVAVSSAGI*