AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003267


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003267 MtrunA17_Chr4g0052061 62.581 155 55 1 1 155 1 152 2.57e-61 186
MsaG003267 MtrunA17_Chr4g0052081 65.823 158 51 1 1 155 1 158 1.22e-57 177
MsaG003267 MtrunA17_Chr8g0376821 40.361 166 86 3 1 155 1 164 9.52e-30 106
MsaG003267 MtrunA17_Chr1g0169761 38.922 167 87 5 1 155 1 164 1.16e-27 101
MsaG003267 MtrunA17_Chr1g0175611 40.000 170 81 5 1 155 1 164 3.94e-27 99.8
MsaG003267 MtrunA17_Chr8g0356071 37.037 162 91 3 1 155 1 158 1.92e-26 97.8
MsaG003267 MtrunA17_Chr1g0175601 39.157 166 82 5 1 152 1 161 2.77e-26 97.8
MsaG003267 MtrunA17_Chr1g0180591 36.686 169 88 3 1 155 1 164 7.34e-26 96.7
MsaG003267 MtrunA17_Chr4g0074101 34.615 182 91 4 1 155 1 181 1.11e-24 94.4
MsaG003267 MtrunA17_Chr3g0119901 36.774 155 84 3 1 141 8 162 1.21e-24 94.4
MsaG003267 MtrunA17_Chr8g0357771 36.585 164 95 2 1 155 1 164 1.69e-24 93.2
MsaG003267 MtrunA17_Chr1g0208581 36.424 151 82 2 2 138 9 159 1.95e-23 91.7
MsaG003267 MtrunA17_Chr1g0206991 34.731 167 95 4 2 154 9 175 4.85e-22 87.0
MsaG003267 MtrunA17_Chr3g0089141 34.641 153 82 3 2 138 9 159 3.77e-21 85.9
MsaG003267 MtrunA17_Chr2g0325971 35.099 151 84 2 2 138 9 159 4.47e-21 85.5
MsaG003267 MtrunA17_Chr1g0208561 34.641 153 82 3 2 138 9 159 5.46e-21 85.5
MsaG003267 MtrunA17_Chr3g0085241 35.669 157 83 4 1 141 40 194 7.53e-21 85.5
MsaG003267 MtrunA17_Chr5g0419601 33.333 156 82 3 1 138 8 159 2.64e-20 83.6
MsaG003267 MtrunA17_Chr4g0018951 34.375 128 82 2 17 142 27 154 5.71e-20 81.3
MsaG003267 MtrunA17_Chr8g0355091 32.934 167 98 4 2 154 9 175 1.54e-19 81.6
MsaG003267 MtrunA17_Chr5g0427401 34.507 142 74 3 1 135 1 130 1.61e-19 81.3
MsaG003267 MtrunA17_Chr3g0099421 33.136 169 95 3 2 154 34 200 1.72e-19 82.0
MsaG003267 MtrunA17_Chr8g0351041 34.783 138 82 2 1 135 1 133 4.79e-19 79.0
MsaG003267 MtrunA17_Chr2g0333981 33.784 148 88 3 1 138 11 158 6.19e-19 79.0
MsaG003267 MtrunA17_Chr3g0099411 38.462 117 66 2 2 112 9 125 9.82e-19 79.3
MsaG003267 MtrunA17_Chr7g0246431 34.783 138 81 3 1 135 1 132 1.19e-18 79.0
MsaG003267 MtrunA17_Chr1g0206721 35.664 143 81 4 2 134 9 150 1.25e-18 79.3
MsaG003267 MtrunA17_Chr1g0206701 32.934 167 98 4 2 154 9 175 1.26e-18 79.3
MsaG003267 MtrunA17_Chr2g0279821 45.238 84 44 1 1 84 1 82 2.34e-18 78.6
MsaG003267 MtrunA17_Chr5g0422421 37.931 116 63 1 2 117 9 115 2.62e-18 78.6
MsaG003267 MtrunA17_Chr8g0351031 34.783 138 82 2 1 135 1 133 2.78e-18 78.2
MsaG003267 MtrunA17_Chr3g0077501 36.719 128 61 3 1 108 1 128 7.87e-18 77.0
MsaG003267 MtrunA17_Chr4g0049541 33.594 128 66 2 1 109 1 128 1.31e-17 76.3
MsaG003267 MtrunA17_Chr1g0149391 29.940 167 103 3 2 154 9 175 1.58e-17 76.3
MsaG003267 MtrunA17_Chr2g0292791 34.000 150 88 4 2 142 9 156 3.11e-17 75.5
MsaG003267 MtrunA17_Chr3g0097101 31.111 135 90 1 1 135 16 147 3.24e-17 75.9
MsaG003267 MtrunA17_Chr1g0187361 42.308 78 45 0 2 79 9 86 3.75e-17 75.5
MsaG003267 MtrunA17_Chr3g0089151 36.190 105 65 1 2 104 9 113 5.25e-17 72.8
MsaG003267 MtrunA17_Chr7g0220121 32.117 137 83 4 1 136 1 128 2.48e-16 73.6
MsaG003267 MtrunA17_Chr2g0317451 35.000 120 62 2 2 114 9 119 3.38e-16 72.8
MsaG003267 MtrunA17_Chr2g0317481 35.000 120 62 2 2 114 9 119 3.49e-16 72.8
MsaG003267 MtrunA17_Chr8g0379021 44.444 72 40 0 2 73 12 83 3.78e-16 71.6
MsaG003267 MtrunA17_Chr4g0061691 32.414 145 87 3 1 144 1 135 4.12e-16 72.4
MsaG003267 MtrunA17_Chr1g0188671 40.230 87 43 1 2 88 47 124 7.62e-16 72.4
MsaG003267 MtrunA17_Chr2g0300421 35.135 111 70 1 2 110 9 119 9.11e-16 70.5
MsaG003267 MtrunA17_Chr5g0427921 51.667 60 29 0 1 60 1 60 1.39e-15 67.0
MsaG003267 MtrunA17_Chr5g0422941 36.522 115 67 2 2 114 9 119 1.40e-15 71.2
MsaG003267 MtrunA17_Chr2g0300441 35.714 112 70 1 2 111 9 120 1.48e-15 71.2
MsaG003267 MtrunA17_Chr4g0020221 44.872 78 43 0 1 78 1 78 1.69e-15 71.2
MsaG003267 MtrunA17_Chr5g0412461 31.915 141 81 3 1 135 1 132 1.78e-15 70.9
MsaG003267 MtrunA17_Chr3g0142191 53.333 60 28 0 1 60 1 60 1.85e-15 70.9
MsaG003267 MtrunA17_Chr1g0173161 47.692 65 34 0 1 65 1 65 2.16e-15 67.0
MsaG003267 MtrunA17_Chr3g0125241 45.205 73 38 1 1 71 26 98 2.25e-15 70.1
MsaG003267 MtrunA17_Chr5g0411691 46.377 69 37 0 1 69 1 69 2.48e-15 70.5
MsaG003267 MtrunA17_Chr5g0412271 31.915 141 81 3 1 135 1 132 2.54e-15 70.5
MsaG003267 MtrunA17_Chr8g0351051 45.070 71 39 0 1 71 1 71 3.51e-15 70.5
MsaG003267 MtrunA17_Chr5g0404951 43.662 71 38 1 1 69 1 71 4.31e-15 69.7
MsaG003267 MtrunA17_Chr1g0187351 47.619 63 33 0 11 73 1 63 5.72e-15 65.9
MsaG003267 MtrunA17_Chr4g0049901 33.929 112 68 1 1 106 27 138 6.67e-15 69.3
MsaG003267 MtrunA17_Chr6g0455511 33.557 149 79 5 1 144 1 134 7.41e-15 69.3
MsaG003267 MtrunA17_Chr7g0220111 43.421 76 42 1 1 75 1 76 1.05e-14 68.9
MsaG003267 MtrunA17_Chr4g0057151 44.928 69 38 0 1 69 1 69 1.37e-14 68.2
MsaG003267 MtrunA17_Chr4g0071601 31.250 176 99 4 1 155 11 185 1.62e-14 67.4
MsaG003267 MtrunA17_Chr1g0164791 41.333 75 42 1 1 73 1 75 2.12e-14 67.8
MsaG003267 MtrunA17_Chr6g0474371 29.697 165 90 4 1 143 1 161 3.48e-14 66.6
MsaG003267 MtrunA17_Chr1g0204111 42.029 69 40 0 1 69 17 85 4.23e-14 67.4
MsaG003267 MtrunA17_Chr3g0134451 42.683 82 46 1 1 81 1 82 5.68e-14 67.8
MsaG003267 MtrunA17_Chr2g0308251 38.028 71 43 1 1 70 1 71 7.09e-14 63.2
MsaG003267 MtrunA17_Chr1g0159661 43.077 65 37 0 1 65 1 65 8.53e-14 65.5
MsaG003267 MtrunA17_Chr5g0420091 40.789 76 44 1 1 75 1 76 1.13e-13 65.9
MsaG003267 MtrunA17_Chr8g0366231 37.895 95 52 3 1 90 1 93 1.16e-13 66.2
MsaG003267 MtrunA17_Chr5g0420081 44.444 63 35 0 1 63 1 63 1.96e-13 65.5
MsaG003267 MtrunA17_Chr1g0206691 34.906 106 63 2 11 110 1 106 3.33e-13 64.7
MsaG003267 MtrunA17_Chr4g0061671 37.662 77 47 1 1 76 1 77 4.12e-13 63.5
MsaG003267 MtrunA17_Chr8g0380021 25.000 152 111 1 1 152 17 165 5.31e-13 64.3
MsaG003267 MtrunA17_Chr7g0246381 45.902 61 33 0 1 61 1 61 6.46e-13 60.5
MsaG003267 MtrunA17_Chr3g0122251 43.750 64 36 0 1 64 1 64 1.03e-12 63.5
MsaG003267 MtrunA17_Chr4g0018421 39.474 76 45 1 1 75 1 76 1.39e-12 62.4
MsaG003267 MtrunA17_Chr5g0425191 54.902 51 23 0 1 51 1 51 2.23e-12 60.1
MsaG003267 MtrunA17_Chr2g0284911 42.029 69 40 0 1 69 16 84 2.52e-12 62.8
MsaG003267 MtrunA17_Chr5g0417661 40.845 71 41 1 1 70 56 126 3.87e-12 60.1
MsaG003267 MtrunA17_Chr1g0166611 57.447 47 20 0 13 59 17 63 4.43e-12 60.1
MsaG003267 MtrunA17_Chr8g0377561 47.368 57 30 0 1 57 1 57 6.38e-12 58.5
MsaG003267 MtrunA17_Chr4g0044071 51.923 52 25 0 1 52 1 52 6.49e-12 58.9
MsaG003267 MtrunA17_Chr7g0238991 31.126 151 81 4 19 146 38 188 1.05e-11 60.8
MsaG003267 MtrunA17_Chr4g0060841 50.000 54 27 0 1 54 1 54 1.35e-11 61.2
MsaG003267 MtrunA17_Chr8g0345001 30.625 160 88 5 3 144 19 173 1.48e-11 59.7
MsaG003267 MtrunA17_Chr3g0111841 46.429 56 30 0 11 66 5 60 3.06e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003267 AT2G34440.1 35.838 173 90 4 1 153 1 172 8.80e-28 102
MsaG003267 AT3G66656.1 50.000 86 43 0 1 86 1 86 2.94e-22 87.8
MsaG003267 AT2G45660.2 34.815 135 85 1 1 135 1 132 3.99e-22 87.0
MsaG003267 AT2G45660.1 34.815 135 85 1 1 135 1 132 1.53e-21 87.0
MsaG003267 AT2G24840.1 34.177 158 85 5 1 141 62 217 1.98e-21 87.4
MsaG003267 AT3G57230.2 35.556 135 83 3 1 135 1 131 7.59e-21 83.2
MsaG003267 AT3G57230.1 35.556 135 83 3 1 135 1 131 4.68e-20 83.6
MsaG003267 AT3G57230.4 35.556 135 83 3 1 135 1 131 4.68e-20 83.6
MsaG003267 AT4G09960.2 35.938 128 62 3 1 108 1 128 2.21e-18 78.6
MsaG003267 AT4G09960.6 35.938 128 62 3 1 108 2 129 2.40e-18 79.0
MsaG003267 AT4G09960.1 35.938 128 62 3 1 108 1 128 2.46e-18 79.0
MsaG003267 AT1G47760.1 34.965 143 77 4 1 139 1 131 2.69e-18 77.8
MsaG003267 AT4G09960.5 35.938 128 62 3 1 108 11 138 3.15e-18 78.6
MsaG003267 AT3G54340.1 34.307 137 80 3 1 135 1 129 5.08e-18 77.8
MsaG003267 AT4G09960.3 35.938 128 62 3 1 108 27 154 5.31e-18 78.2
MsaG003267 AT1G28460.1 46.377 69 37 0 2 70 8 76 6.42e-18 76.6
MsaG003267 AT4G09960.4 35.938 128 62 3 1 108 96 223 7.07e-18 79.0
MsaG003267 AT1G29962.1 44.928 69 38 0 2 70 8 76 7.13e-18 76.6
MsaG003267 AT4G24540.1 34.043 141 78 3 1 135 1 132 2.54e-17 75.9
MsaG003267 AT5G10140.2 47.143 70 36 1 1 69 1 70 3.45e-17 74.3
MsaG003267 AT5G10140.3 47.143 70 36 1 1 69 1 70 5.91e-17 74.3
MsaG003267 AT5G10140.4 47.143 70 36 1 1 69 1 70 6.20e-17 73.9
MsaG003267 AT5G10140.1 47.143 70 36 1 1 69 1 70 7.70e-17 74.3
MsaG003267 AT1G65360.1 36.111 108 69 0 1 108 6 113 8.67e-17 74.7
MsaG003267 AT4G22950.2 31.126 151 96 2 1 149 1 145 1.21e-16 73.2
MsaG003267 AT4G37940.1 47.826 69 36 0 1 69 1 69 1.39e-16 73.9
MsaG003267 AT4G37940.4 47.826 69 36 0 1 69 1 69 1.63e-16 73.6
MsaG003267 AT4G37940.3 47.826 69 36 0 1 69 1 69 2.86e-16 72.0
MsaG003267 AT4G22950.3 31.126 151 96 2 1 149 1 145 3.34e-16 72.8
MsaG003267 AT4G22950.1 31.126 151 96 2 1 149 1 145 3.34e-16 72.8
MsaG003267 AT3G57390.3 40.816 98 53 1 1 93 1 98 5.23e-16 72.4
MsaG003267 AT5G51870.1 46.377 69 37 0 1 69 1 69 5.35e-16 72.0
MsaG003267 AT2G22540.3 47.826 69 36 0 1 69 1 69 5.41e-16 72.8
MsaG003267 AT2G22540.1 47.826 69 36 0 1 69 1 69 5.41e-16 72.8
MsaG003267 AT5G51870.2 46.377 69 37 0 1 69 1 69 6.09e-16 71.2
MsaG003267 AT3G57390.1 40.816 98 53 1 1 93 1 98 7.48e-16 72.4
MsaG003267 AT5G51860.2 32.593 135 89 2 1 135 1 133 8.20e-16 71.6
MsaG003267 AT5G51860.1 32.593 135 89 2 1 135 1 133 8.60e-16 71.6
MsaG003267 AT5G51870.5 46.377 69 37 0 1 69 24 92 9.04e-16 71.2
MsaG003267 AT5G51870.4 46.377 69 37 0 1 69 1 69 9.38e-16 71.6
MsaG003267 AT5G62165.17 42.466 73 42 0 1 73 1 73 9.98e-16 70.5
MsaG003267 AT5G62165.12 42.466 73 42 0 1 73 1 73 9.98e-16 70.5
MsaG003267 AT5G62165.11 42.466 73 42 0 1 73 1 73 9.98e-16 70.5
MsaG003267 AT5G13790.2 32.787 122 80 1 1 122 1 120 1.01e-15 72.4
MsaG003267 AT2G45650.1 32.639 144 90 1 1 144 1 137 1.23e-15 72.0
MsaG003267 AT1G01530.1 28.571 161 102 1 1 148 6 166 1.26e-15 72.0
MsaG003267 AT5G51870.3 46.377 69 37 0 1 69 11 79 1.40e-15 71.2
MsaG003267 AT5G62165.6 39.744 78 47 0 1 78 1 78 1.43e-15 69.7
MsaG003267 AT5G62165.9 39.744 78 47 0 1 78 1 78 1.43e-15 69.7
MsaG003267 AT5G62165.7 39.744 78 47 0 1 78 1 78 1.43e-15 69.7
MsaG003267 AT5G62165.8 39.744 78 47 0 1 78 1 78 1.43e-15 69.7
MsaG003267 AT5G62165.13 39.744 78 47 0 1 78 1 78 1.43e-15 69.7
MsaG003267 AT5G13790.1 30.769 156 87 2 1 135 1 156 1.53e-15 72.0
MsaG003267 AT2G14210.1 45.833 72 38 1 1 71 1 72 2.86e-15 70.9
MsaG003267 AT1G28450.1 43.478 69 39 0 2 70 8 76 3.15e-15 69.7
MsaG003267 AT5G62165.14 39.744 78 47 0 1 78 1 78 3.46e-15 67.8
MsaG003267 AT5G65070.4 45.763 59 32 0 1 59 1 59 3.59e-15 68.6
MsaG003267 AT2G14210.2 45.833 72 38 1 1 71 1 72 3.83e-15 70.5
MsaG003267 AT5G65050.2 42.857 70 39 1 1 69 1 70 3.86e-15 69.3
MsaG003267 AT5G62165.3 39.744 78 47 0 1 78 1 78 4.31e-15 69.7
MsaG003267 AT5G62165.1 39.744 78 47 0 1 78 1 78 4.31e-15 69.7
MsaG003267 AT5G62165.2 39.744 78 47 0 1 78 1 78 4.31e-15 69.7
MsaG003267 AT1G69120.2 38.043 92 54 2 1 91 1 90 4.32e-15 70.1
MsaG003267 AT5G62165.10 39.744 78 47 0 1 78 1 78 4.34e-15 69.7
MsaG003267 AT5G62165.4 39.744 78 47 0 1 78 1 78 4.34e-15 69.7
MsaG003267 AT5G65070.1 45.763 59 32 0 1 59 1 59 5.97e-15 69.3
MsaG003267 AT1G69120.1 38.043 92 54 2 1 91 1 90 7.36e-15 70.1
MsaG003267 AT1G26310.1 31.061 132 86 3 1 131 1 128 9.12e-15 69.7
MsaG003267 AT5G23260.4 47.945 73 36 1 1 71 17 89 1.03e-14 69.7
MsaG003267 AT5G23260.2 47.945 73 36 1 1 71 1 73 1.10e-14 69.3
MsaG003267 AT5G23260.1 47.945 73 36 1 1 71 17 89 1.13e-14 69.3
MsaG003267 AT1G72350.1 50.000 70 33 1 2 71 43 110 1.22e-14 68.9
MsaG003267 AT5G23260.3 47.945 73 36 1 1 71 1 73 1.26e-14 68.9
MsaG003267 AT5G65050.5 42.857 70 39 1 1 69 1 70 1.60e-14 67.8
MsaG003267 AT5G65050.3 42.857 70 39 1 1 69 1 70 1.71e-14 67.8
MsaG003267 AT5G65050.1 42.857 70 39 1 1 69 1 70 1.74e-14 67.8
MsaG003267 AT5G65060.3 41.429 70 40 1 1 69 1 70 1.76e-14 67.8
MsaG003267 AT5G65070.2 45.763 59 32 0 1 59 1 59 1.87e-14 68.6
MsaG003267 AT3G61120.1 35.294 136 66 4 1 116 1 134 1.93e-14 68.6
MsaG003267 AT5G20240.2 43.662 71 38 1 1 69 1 71 1.98e-14 66.6
MsaG003267 AT1G71692.1 37.615 109 56 4 1 97 1 109 2.02e-14 68.2
MsaG003267 AT5G65070.5 45.763 59 32 0 1 59 1 59 2.37e-14 67.8
MsaG003267 AT5G15800.1 43.421 76 42 1 1 75 1 76 2.37e-14 68.6
MsaG003267 AT5G60440.1 32.203 177 89 4 2 154 7 176 2.69e-14 68.9
MsaG003267 AT4G11880.2 30.882 136 89 2 1 135 1 132 2.70e-14 67.0
MsaG003267 AT4G11880.3 30.882 136 89 2 1 135 1 132 2.70e-14 67.0
MsaG003267 AT5G20240.1 43.662 71 38 1 1 69 1 71 2.92e-14 67.4
MsaG003267 AT5G65060.2 41.429 70 40 1 1 69 1 70 3.20e-14 67.0
MsaG003267 AT5G65070.3 45.763 59 32 0 1 59 1 59 3.52e-14 67.8
MsaG003267 AT5G65060.1 41.429 70 40 1 1 69 1 70 3.55e-14 67.0
MsaG003267 AT5G60910.1 31.034 145 87 3 1 141 1 136 3.56e-14 67.8
MsaG003267 AT5G15800.2 43.421 76 42 1 1 75 1 76 3.59e-14 68.2
MsaG003267 AT3G30260.1 41.667 72 41 1 1 71 1 72 5.20e-14 67.4
MsaG003267 AT4G11880.4 30.882 136 89 2 1 135 1 132 5.29e-14 67.0
MsaG003267 AT4G11880.1 30.882 136 89 2 1 135 1 132 5.29e-14 67.0
MsaG003267 AT3G02310.2 42.105 76 43 1 1 75 1 76 7.44e-14 66.2
MsaG003267 AT2G22540.2 54.545 55 25 0 1 55 1 55 7.82e-14 67.0
MsaG003267 AT2G03710.3 42.667 75 41 2 1 73 1 75 1.47e-13 65.5
MsaG003267 AT3G02310.1 42.105 76 43 1 1 75 1 76 1.82e-13 65.9
MsaG003267 AT3G58780.3 45.588 68 37 0 1 68 16 83 1.86e-13 66.2
MsaG003267 AT4G37435.1 50.877 57 28 0 1 57 1 57 2.49e-13 64.7
MsaG003267 AT2G42830.2 27.632 152 107 1 1 152 16 164 2.74e-13 65.5
MsaG003267 AT2G42830.1 27.632 152 107 1 1 152 16 164 2.79e-13 65.5
MsaG003267 AT3G58780.2 35.433 127 68 4 1 113 16 142 3.31e-13 65.1
MsaG003267 AT3G04100.1 33.333 108 67 1 2 104 14 121 5.46e-13 64.3
MsaG003267 AT2G03710.2 42.667 75 41 2 1 73 1 75 5.57e-13 64.7
MsaG003267 AT2G03710.1 42.667 75 41 2 1 73 1 75 5.91e-13 64.7
MsaG003267 AT3G58780.4 30.337 178 93 6 1 155 16 185 6.76e-13 64.7
MsaG003267 AT3G58780.1 33.582 134 68 4 1 113 16 149 6.77e-13 64.3
MsaG003267 AT3G58780.5 33.582 134 68 4 1 113 22 155 7.19e-13 64.3
MsaG003267 AT1G77980.1 32.051 156 96 3 1 155 1 147 7.82e-13 65.1
MsaG003267 AT1G24260.1 42.857 70 39 1 1 69 1 70 1.55e-12 63.5
MsaG003267 AT1G24260.2 42.857 70 39 1 1 69 1 70 1.63e-12 63.5
MsaG003267 AT1G24260.3 42.857 70 39 1 1 69 1 70 1.90e-12 63.2
MsaG003267 AT1G22130.1 54.902 51 23 0 1 51 1 51 3.18e-12 63.2
MsaG003267 AT4G36590.1 29.936 157 90 5 2 138 7 163 3.94e-12 62.4
MsaG003267 AT2G22630.1 40.580 69 41 0 1 69 1 69 4.48e-12 62.0
MsaG003267 AT2G22630.2 40.580 69 41 0 1 69 1 69 4.48e-12 62.0
MsaG003267 AT4G18960.1 42.647 68 39 0 2 69 18 85 4.81e-12 62.0
MsaG003267 AT1G18750.1 37.647 85 51 1 1 83 1 85 5.30e-12 62.8
MsaG003267 AT1G18750.4 37.647 85 51 1 1 83 1 85 5.60e-12 62.8
MsaG003267 AT1G18750.3 37.647 85 51 1 1 83 1 85 5.95e-12 62.8
MsaG003267 AT2G03060.3 53.846 52 24 0 1 52 1 52 1.03e-11 62.0
MsaG003267 AT2G03060.7 53.846 52 24 0 1 52 1 52 1.03e-11 62.0
MsaG003267 AT2G03060.1 53.846 52 24 0 1 52 1 52 1.03e-11 62.0
MsaG003267 AT2G03060.2 53.846 52 24 0 1 52 1 52 1.10e-11 62.0
MsaG003267 AT1G77080.5 44.286 70 38 1 1 69 1 70 2.57e-11 58.9
MsaG003267 AT1G77080.11 44.286 70 38 1 1 69 1 70 2.84e-11 58.9
MsaG003267 AT1G69540.1 25.862 174 96 4 1 146 1 169 3.56e-11 60.5
MsaG003267 AT1G69540.2 25.862 174 96 4 1 146 1 169 3.98e-11 60.1
MsaG003267 AT1G77080.12 64.103 39 14 0 1 39 1 39 9.69e-11 57.0

Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCTTGGCAAAGAACTTA+TGG 0.243174 1:-54134650 MsaT003267.1:CDS
GCTGGTAACCCATTTGCTTT+TGG 0.256960 1:-54134772 MsaT003267.1:CDS
TCGACCACAACTAGAAAATT+TGG 0.274209 1:+54134745 None:intergenic
AGGCAAAATGTTGAGCCTTC+AGG 0.380687 1:-54134688 MsaT003267.1:CDS
AATGTTGAGCCTTCAGGAAA+TGG 0.389490 1:-54134682 MsaT003267.1:CDS
TTTGGAGAACCAAAAGCAAA+TGG 0.398481 1:+54134763 None:intergenic
AATGCTAGAGTTGGTATAGT+TGG 0.416121 1:-54134805 MsaT003267.1:CDS
TCAAGATCATCATAGGCAAT+AGG 0.451636 1:+54134577 None:intergenic
GTGCTTGGCAAAGAACTTAT+GGG 0.464747 1:-54134649 MsaT003267.1:CDS
ATCACATAGGTTTCTTTGCA+AGG 0.474087 1:+54134476 None:intergenic
GAGCTCCGTGCGGATATTGA+TGG 0.482079 1:-54134517 MsaT003267.1:CDS
AAAGCAAATGGGTTACCAGC+AGG 0.484877 1:+54134775 None:intergenic
TTGGAGAACCAAAAGCAAAT+GGG 0.513428 1:+54134764 None:intergenic
GTCTACATCAAGATCATCAT+AGG 0.528285 1:+54134570 None:intergenic
TTGATATTTCCATTTCCTGA+AGG 0.537216 1:+54134673 None:intergenic
AATGGAAATATCAACGTGCT+TGG 0.540412 1:-54134664 MsaT003267.1:CDS
AAGCAAATGGGTTACCAGCA+GGG 0.559264 1:+54134776 None:intergenic
AGCAAATGGGTTACCAGCAG+GGG 0.580138 1:+54134777 None:intergenic
ATTCTCTGTAATGCTAGAGT+TGG 0.585032 1:-54134814 MsaT003267.1:CDS
TGCGGATATTGATGGAGCAT+CGG 0.589919 1:-54134509 MsaT003267.1:CDS
TGTGACGAAAGAGCTGAAGA+AGG 0.606194 1:-54134626 MsaT003267.1:CDS
TATGATGATCTTGATGTAGA+CGG 0.634624 1:-54134568 MsaT003267.1:CDS
GAGTACCTTCGTGAAACACA+AGG 0.667967 1:-54134721 MsaT003267.1:CDS
TTGTTGAGAACAGAGATGCA+AGG 0.674744 1:-54134894 MsaT003267.1:CDS
ATTCACCTTGTGTTTCACGA+AGG 0.677540 1:+54134716 None:intergenic
AAGGCAGAGACAATTGACAA+AGG 0.692943 1:-54134607 MsaT003267.1:CDS
ATGCTCCATCAATATCCGCA+CGG 0.704721 1:+54134512 None:intergenic
TTCTTTGGAAGAGCTCCGTG+CGG 0.705364 1:-54134527 MsaT003267.1:CDS
AAACACAAGGTGAATCATCG+AGG 0.729840 1:-54134708 MsaT003267.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 54134477 54134944 54134477 ID=MsaG003267
Chr1 mRNA 54134477 54134944 54134477 ID=MsaT003267.1;Parent=MsaG003267
Chr1 exon 54134477 54134944 54134477 ID=MsaT003267.1.exon1;Parent=MsaT003267.1
Chr1 CDS 54134477 54134944 54134477 ID=cds.MsaT003267.1;Parent=MsaT003267.1
Gene Sequence

>MsaT003267.1

ATGGGTCGTAAAAAAATAGGTATTGAATTTGTTGAGAACAGAGATGCAAGGTATGTCACATTTTCTAAGAGAAAGAATGGTCTTTTCAAGAAAGCAAATGAGTTATCAATTCTCTGTAATGCTAGAGTTGGTATAGTTGGTTTTACCCCTGCTGGTAACCCATTTGCTTTTGGTTCTCCAAATTTTCTAGTTGTGGTCGATGAGTACCTTCGTGAAACACAAGGTGAATCATCGAGGCAAAATGTTGAGCCTTCAGGAAATGGAAATATCAACGTGCTTGGCAAAGAACTTATGGGTGTGACGAAAGAGCTGAAGAAGGCAGAGACAATTGACAAAGGTAAACTACCTATTGCCTATGATGATCTTGATGTAGACGGACTTAAAAAAGTGAAGGCTTCTTTGGAAGAGCTCCGTGCGGATATTGATGGAGCATCGGCTTTGCTTCTCCTTGCAAAGAAACCTATGTGA

Protein sequence

>MsaT003267.1

MGRKKIGIEFVENRDARYVTFSKRKNGLFKKANELSILCNARVGIVGFTPAGNPFAFGSPNFLVVVDEYLRETQGESSRQNVEPSGNGNINVLGKELMGVTKELKKAETIDKGKLPIAYDDLDVDGLKKVKASLEELRADIDGASALLLLAKKPM*