AlfalfaGEDB | MsaG003267

M. sativa ssp. caerulea / MsaG003267

KEGG: -
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003267	MCI21249.1	64.331	157	53	3	1	154	1	157	8.92e-62	197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003267	sp\|O64703\|AGL29_ARATH	35.838	173	90	4	1	153	1	172	8.66e-27	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003267	tr\|A0A392QBJ4\|A0A392QBJ4_9FABA	64.331	157	53	3	1	154	1	157	4.26e-62	197

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003267	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG003267	0.839515	2.792099e-57	1.073465e-54
MsaG000048	MsaG003267	0.902674	1.774243e-78	1.062509e-74
MsaG000202	MsaG003267	0.804468	3.593109e-49	5.380524e-47
MsaG000253	MsaG003267	0.830686	4.598203e-55	1.357050e-52
MsaG000286	MsaG003267	0.844977	1.014489e-58	4.645756e-56
MsaG000350	MsaG003267	0.811255	1.314907e-50	2.315382e-48
MsaG000545	MsaG003267	0.840657	1.410304e-57	5.620241e-55
MsaG000566	MsaG003267	0.824855	1.141636e-53	2.860418e-51
MsaG000621	MsaG003267	0.827557	2.616282e-54	7.066303e-52
MsaG000705	MsaG003267	0.854473	2.320815e-61	1.471485e-58

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003267	MtrunA17_Chr4g0052061	62.581	155	55	1	1	155	1	152	2.57e-61	186
MsaG003267	MtrunA17_Chr4g0052081	65.823	158	51	1	1	155	1	158	1.22e-57	177
MsaG003267	MtrunA17_Chr8g0376821	40.361	166	86	3	1	155	1	164	9.52e-30	106
MsaG003267	MtrunA17_Chr1g0169761	38.922	167	87	5	1	155	1	164	1.16e-27	101
MsaG003267	MtrunA17_Chr1g0175611	40.000	170	81	5	1	155	1	164	3.94e-27	99.8
MsaG003267	MtrunA17_Chr8g0356071	37.037	162	91	3	1	155	1	158	1.92e-26	97.8
MsaG003267	MtrunA17_Chr1g0175601	39.157	166	82	5	1	152	1	161	2.77e-26	97.8
MsaG003267	MtrunA17_Chr1g0180591	36.686	169	88	3	1	155	1	164	7.34e-26	96.7
MsaG003267	MtrunA17_Chr4g0074101	34.615	182	91	4	1	155	1	181	1.11e-24	94.4
MsaG003267	MtrunA17_Chr3g0119901	36.774	155	84	3	1	141	8	162	1.21e-24	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003267	AT2G34440.1	35.838	173	90	4	1	153	1	172	8.80e-28	102
MsaG003267	AT3G66656.1	50.000	86	43	0	1	86	1	86	2.94e-22	87.8
MsaG003267	AT2G45660.2	34.815	135	85	1	1	135	1	132	3.99e-22	87.0
MsaG003267	AT2G45660.1	34.815	135	85	1	1	135	1	132	1.53e-21	87.0
MsaG003267	AT2G24840.1	34.177	158	85	5	1	141	62	217	1.98e-21	87.4
MsaG003267	AT3G57230.2	35.556	135	83	3	1	135	1	131	7.59e-21	83.2
MsaG003267	AT3G57230.1	35.556	135	83	3	1	135	1	131	4.68e-20	83.6
MsaG003267	AT3G57230.4	35.556	135	83	3	1	135	1	131	4.68e-20	83.6
MsaG003267	AT4G09960.2	35.938	128	62	3	1	108	1	128	2.21e-18	78.6
MsaG003267	AT4G09960.6	35.938	128	62	3	1	108	2	129	2.40e-18	79.0

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Find 29 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAGGTGAATCATCG+AGG	0.729840	1:-54134708	MsaT003267.1:CDS
AAAGCAAATGGGTTACCAGC+AGG	0.484877	1:+54134775	None:intergenic
AAGCAAATGGGTTACCAGCA+GGG	0.559264	1:+54134776	None:intergenic
AAGGCAGAGACAATTGACAA+AGG	0.692943	1:-54134607	MsaT003267.1:CDS
AATGCTAGAGTTGGTATAGT+TGG	0.416121	1:-54134805	MsaT003267.1:CDS
AATGGAAATATCAACGTGCT+TGG	0.540412	1:-54134664	MsaT003267.1:CDS
AATGTTGAGCCTTCAGGAAA+TGG	0.389490	1:-54134682	MsaT003267.1:CDS
AGCAAATGGGTTACCAGCAG+GGG	0.580138	1:+54134777	None:intergenic
AGGCAAAATGTTGAGCCTTC+AGG	0.380687	1:-54134688	MsaT003267.1:CDS
ATCACATAGGTTTCTTTGCA+AGG	0.474087	1:+54134476	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	54134477	54134944	54134477	ID=MsaG003267
Chr1	mRNA	54134477	54134944	54134477	ID=MsaT003267.1;Parent=MsaG003267
Chr1	exon	54134477	54134944	54134477	ID=MsaT003267.1.exon1;Parent=MsaT003267.1
Chr1	CDS	54134477	54134944	54134477	ID=cds.MsaT003267.1;Parent=MsaT003267.1

Gene Sequence

>MsaT003267.1

ATGGGTCGTAAAAAAATAGGTATTGAATTTGTTGAGAACAGAGATGCAAGGTATGTCACATTTTCTAAGAGAAAGAATGGTCTTTTCAAGAAAGCAAATGAGTTATCAATTCTCTGTAATGCTAGAGTTGGTATAGTTGGTTTTACCCCTGCTGGTAACCCATTTGCTTTTGGTTCTCCAAATTTTCTAGTTGTGGTCGATGAGTACCTTCGTGAAACACAAGGTGAATCATCGAGGCAAAATGTTGAGCCTTCAGGAAATGGAAATATCAACGTGCTTGGCAAAGAACTTATGGGTGTGACGAAAGAGCTGAAGAAGGCAGAGACAATTGACAAAGGTAAACTACCTATTGCCTATGATGATCTTGATGTAGACGGACTTAAAAAAGTGAAGGCTTCTTTGGAAGAGCTCCGTGCGGATATTGATGGAGCATCGGCTTTGCTTCTCCTTGCAAAGAAACCTATGTGA

Protein sequence

>MsaT003267.1

MGRKKIGIEFVENRDARYVTFSKRKNGLFKKANELSILCNARVGIVGFTPAGNPFAFGSPNFLVVVDEYLRETQGESSRQNVEPSGNGNINVLGKELMGVTKELKKAETIDKGKLPIAYDDLDVDGLKKVKASLEELRADIDGASALLLLAKKPM*