AlfalfaGEDB | MsaG003288

M. sativa ssp. caerulea / MsaG003288

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	KEH42497.1	98.883	358	4	0	1	358	111	468	0.0	737

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	sp\|Q9M384\|SCR_ARATH	53.315	362	158	5	2	356	296	653	3.43e-128	384

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	tr\|A0A396JRA5\|A0A396JRA5_MEDTR	98.883	358	4	0	1	358	125	482	0.0	737

TFs/TRs:

Gene ID	Type	Classification
MsaG003288	TF	GRAS

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000034	MsaG003288	0.859461	7.981646e-63	6.079930e-60
MsaG001156	MsaG003288	0.852972	6.241507e-61	3.751695e-58
MsaG001178	MsaG003288	0.832778	1.409254e-55	4.419912e-53
MsaG001179	MsaG003288	0.865836	8.858731e-65	8.653644e-62
MsaG001413	MsaG003288	0.809063	3.882930e-50	6.482852e-48
MsaG001414	MsaG003288	0.828337	1.700926e-54	4.695712e-52
MsaG001415	MsaG003288	0.828786	1.326959e-54	3.709450e-52
MsaG002016	MsaG003288	0.882079	2.994230e-70	5.956191e-67
MsaG002218	MsaG003288	0.803608	5.412417e-49	7.944897e-47
MsaG003083	MsaG003288	0.840016	2.070243e-57	8.086222e-55
MsaG003276	MsaG003288	0.899151	6.025462e-77	2.932738e-73
MsaG003287	MsaG003288	0.876396	3.005144e-68	4.599061e-65
MsaG003288	MsaG003575	0.824730	1.220879e-53	3.048499e-51
MsaG003288	MsaG003867	0.831382	3.107766e-55	9.358350e-53
MsaG003288	MsaG004282	0.829412	9.373302e-55	2.667315e-52
MsaG003288	MsaG004464	0.801107	1.762333e-48	2.443034e-46
MsaG003288	MsaG004576	0.827116	3.332743e-54	8.890577e-52
MsaG003288	MsaG004726	0.867963	1.874089e-65	1.995914e-62
MsaG003288	MsaG004892	0.839785	2.375977e-57	9.213127e-55
MsaG003288	MsaG005001	0.828050	1.993741e-54	5.459805e-52
MsaG003288	MsaG005150	0.806055	1.677543e-49	2.606736e-47
MsaG003288	MsaG005205	0.812015	9.004310e-51	1.615403e-48
MsaG003288	MsaG005324	0.824312	1.530023e-53	3.777295e-51
MsaG003288	MsaG005838	0.822433	4.185141e-53	9.819011e-51
MsaG003288	MsaG006398	0.802506	9.127096e-49	1.306208e-46
MsaG003288	MsaG006533	0.849536	5.770964e-60	3.078953e-57
MsaG003288	MsaG007088	0.812999	5.500136e-51	1.011158e-48
MsaG003288	MsaG007067	0.818985	2.572291e-52	5.508268e-50
MsaG003288	MsaG007423	0.812126	8.521461e-51	1.532872e-48
MsaG003288	MsaG007428	0.820521	1.151336e-52	2.567352e-50
MsaG003288	MsaG007429	0.816378	9.901760e-52	1.982214e-49
MsaG003288	MsaG008047	0.836121	2.058671e-56	7.131683e-54
MsaG003288	MsaG008101	0.810132	2.293786e-50	3.929717e-48
MsaG003288	MsaG008274	0.810519	1.894910e-50	3.277202e-48
MsaG003288	MsaG008542	0.804160	4.162020e-49	6.188244e-47
MsaG003288	MsaG008538	0.852225	1.016819e-60	5.953438e-58
MsaG003288	MsaG008550	0.819593	1.872668e-52	4.074402e-50
MsaG003288	MsaG008967	0.812700	6.391236e-51	1.166253e-48
MsaG003288	MsaG010053	0.805827	1.872102e-49	2.893495e-47
MsaG003288	MsaG010095	0.829949	6.944896e-55	2.007044e-52
MsaG003288	MsaG010506	0.827375	2.890667e-54	7.767650e-52
MsaG003288	MsaG010618	0.802524	9.050125e-49	1.295727e-46
MsaG003288	MsaG010868	0.818660	3.047348e-52	6.470075e-50
MsaG003288	MsaG011115	0.800521	2.318950e-48	3.172429e-46
MsaG003288	MsaG011505	0.856161	7.523090e-62	5.069482e-59
MsaG003288	MsaG011598	0.850992	2.263804e-60	1.269624e-57
MsaG003288	MsaG012273	0.823557	2.296025e-53	5.553201e-51
MsaG003288	MsaG012326	0.870613	2.604242e-66	3.096422e-63
MsaG003288	MsaG012581	0.814920	2.083642e-51	4.019765e-49
MsaG003288	MsaG012933	0.813825	3.628017e-51	6.809474e-49
MsaG003288	MsaG012939	0.814311	2.837834e-51	5.391488e-49
MsaG003288	MsaG012941	0.813512	4.250032e-51	7.914342e-49
MsaG003288	MsaG012942	0.808664	4.721356e-50	7.807513e-48
MsaG003288	MsaG014541	0.829516	8.843723e-55	2.524241e-52
MsaG003288	MsaG015173	0.825864	6.604250e-54	1.701512e-51
MsaG003288	MsaG016724	0.817989	4.316533e-52	9.007159e-50
MsaG003288	MsaG018170	0.802290	1.010524e-48	1.439067e-46
MsaG003288	MsaG018183	0.873008	4.214872e-67	5.554797e-64
MsaG003288	MsaG018247	0.815122	1.880655e-51	3.646524e-49
MsaG003288	MsaG018248	0.808215	5.880573e-50	9.619412e-48
MsaG003288	MsaG018452	0.856059	8.058969e-62	5.410172e-59
MsaG003288	MsaG018553	0.841689	7.575341e-58	3.119047e-55
MsaG003288	MsaG019182	0.813494	4.288502e-51	7.982080e-49
MsaG003288	MsaG020314	0.880148	1.471176e-69	2.673178e-66
MsaG003288	MsaG020846	0.802619	8.649393e-49	1.241070e-46
MsaG003288	MsaG020868	0.807822	7.123255e-50	1.154279e-47
MsaG003288	MsaG020873	0.811981	9.161510e-51	1.642201e-48
MsaG003288	MsaG020983	0.808393	5.392435e-50	8.858491e-48
MsaG003288	MsaG020984	0.825290	9.021258e-54	2.287405e-51
MsaG003288	MsaG021088	0.818158	3.953913e-52	8.286649e-50
MsaG003288	MsaG021076	0.803077	6.964072e-49	1.009808e-46
MsaG003288	MsaG021278	0.808675	4.696927e-50	7.769090e-48
MsaG003288	MsaG021279	0.817931	4.448455e-52	9.268509e-50
MsaG003288	MsaG021281	0.804447	3.628573e-49	5.431023e-47
MsaG003288	MsaG021405	0.851231	1.939365e-60	1.096662e-57
MsaG003288	MsaG021575	0.814823	2.189322e-51	4.213328e-49
MsaG003288	MsaG021863	0.807072	1.025669e-49	1.632522e-47
MsaG003288	MsaG021896	0.818969	2.594005e-52	5.552500e-50
MsaG003288	MsaG022059	0.821940	5.437972e-53	1.259074e-50
MsaG003288	MsaG022441	0.815996	1.204044e-51	2.386966e-49
MsaG003288	MsaG022683	0.852796	7.001985e-61	4.182555e-58
MsaG003288	MsaG022923	0.803149	6.731382e-49	9.776775e-47
MsaG003288	MsaG023089	0.859907	5.869661e-63	4.547103e-60
MsaG003288	MsaG023408	0.810159	2.264145e-50	3.881463e-48
MsaG003288	MsaG023744	0.845113	9.324723e-59	4.288774e-56
MsaG003288	MsaG023683	0.852097	1.105332e-60	6.443211e-58
MsaG003288	MsaG023914	0.806977	1.074262e-49	1.706005e-47
MsaG003288	MsaG023917	0.807050	1.036912e-49	1.649527e-47
MsaG003288	MsaG023837	0.812331	7.688845e-51	1.390208e-48
MsaG003288	MsaG023842	0.810309	2.101663e-50	3.616263e-48
MsaG003288	MsaG023856	0.870757	2.337726e-66	2.796810e-63
MsaG003288	MsaG024012	0.800921	1.922720e-48	2.654209e-46
MsaG003288	MsaG024025	0.820962	9.126565e-53	2.059049e-50
MsaG003288	MsaG024026	0.867450	2.733478e-65	2.850509e-62
MsaG003288	MsaG024240	0.803501	5.694684e-49	8.338607e-47
MsaG003288	MsaG025089	0.835263	3.387488e-56	1.143570e-53
MsaG003288	MsaG027204	0.812815	6.034951e-51	1.104366e-48
MsaG003288	MsaG028374	0.800986	1.864955e-48	2.578292e-46
MsaG003288	MsaG028456	0.803862	4.798256e-49	7.084870e-47
MsaG003288	MsaG028554	0.801680	1.346607e-48	1.891187e-46
MsaG003288	MsaG028765	0.806242	1.532508e-49	2.392040e-47
MsaG003288	MsaG028811	0.802867	7.694974e-49	1.110350e-46
MsaG003288	MsaG028872	0.818401	3.485188e-52	7.350083e-50
MsaG003288	MsaG029340	0.810826	1.627358e-50	2.835615e-48
MsaG003288	MsaG029862	0.804467	3.594867e-49	5.382986e-47
MsaG003288	MsaG030030	0.812304	7.792690e-51	1.408017e-48
MsaG003288	MsaG030840	0.856212	7.271541e-62	4.909112e-59
MsaG003288	MsaG031277	0.809525	3.094368e-50	5.224251e-48
MsaG003288	MsaG031436	0.883626	8.188686e-71	1.755011e-67
MsaG003288	MsaG032998	0.834360	5.700674e-56	1.873453e-53
MsaG003288	MsaG033354	0.877002	1.858045e-68	2.922405e-65
MsaG003288	MsaG033369	0.817091	6.861941e-52	1.399141e-49
MsaG003288	MsaG033370	0.822450	4.148160e-53	9.736531e-51
MsaG003288	MsaG033371	0.861178	2.427677e-63	1.974094e-60
MsaG003288	MsaG033437	0.805317	2.392727e-49	3.654342e-47
MsaG003288	MsaG034287	0.829906	7.116356e-55	2.054001e-52
MsaG003288	MsaG034288	0.806310	1.483163e-49	2.318712e-47
MsaG003288	MsaG034658	0.822711	3.609065e-53	8.531360e-51
MsaG003288	MsaG035270	0.813548	4.173713e-51	7.779160e-49
MsaG003288	MsaG035373	0.823604	2.239075e-53	5.422483e-51
MsaG003288	MsaG036217	0.841725	7.410328e-58	3.054552e-55
MsaG003288	MsaG037853	0.808182	5.977887e-50	9.770840e-48
MsaG003288	MsaG037937	0.800393	2.460932e-48	3.357032e-46
MsaG003288	MsaG038415	0.810374	2.035321e-50	3.507691e-48
MsaG003288	MsaG038533	0.803028	7.129069e-49	1.032554e-46
MsaG003288	MsaG038986	0.815528	1.528877e-51	2.995188e-49
MsaG003288	MsaG039613	0.821267	7.770068e-53	1.767200e-50
MsaG003288	MsaG039723	0.802380	9.685391e-49	1.382132e-46
MsaG003288	MsaG039671	0.836629	1.531195e-56	5.385776e-54
MsaG003288	MsaG040072	0.817109	6.797766e-52	1.386714e-49
MsaG003288	MsaG040077	0.818559	3.211459e-52	6.800355e-50
MsaG003288	MsaG040740	0.830612	4.791725e-55	1.411171e-52
MsaG003288	MsaG040775	0.862095	1.277686e-63	1.076238e-60
MsaG003288	MsaG040994	0.834490	5.291411e-56	1.745602e-53
MsaG003288	MsaG041368	0.819254	2.236215e-52	4.822527e-50
MsaG003288	MsaG041561	0.804097	4.289397e-49	6.368556e-47
MsaG003288	MsaG041687	0.804008	4.474915e-49	6.630111e-47
MsaG003288	MsaG041888	0.822905	3.254425e-53	7.733282e-51
MsaG003288	MsaG042086	0.859020	1.080721e-62	8.095979e-60
MsaG003288	MsaG043369	0.824440	1.428051e-53	3.537777e-51
MsaG003288	MsaG043665	0.871201	1.670567e-66	2.036925e-63
MsaG003288	MsaG044131	0.870662	2.509586e-66	2.990248e-63
MsaG003288	MsaG044284	0.813569	4.129898e-51	7.701565e-49
MsaG003288	MsaG044323	0.804872	2.961404e-49	4.476448e-47
MsaG003288	MsaG044352	0.872444	6.493210e-67	8.350988e-64
MsaG003288	MsaG044354	0.863648	4.259893e-64	3.814275e-61
MsaG003288	MsaG045125	0.845454	7.548680e-59	3.511040e-56
MsaG003288	MsaG046120	0.805336	2.370796e-49	3.622440e-47
MsaG003288	MsaG046307	0.858851	1.213793e-62	9.035013e-60
MsaG003288	MsaG046384	0.834846	4.308876e-56	1.436721e-53
MsaG003288	MsaG046722	0.801425	1.518565e-48	2.120332e-46
MsaG003288	MsaG046768	0.817174	6.574537e-52	1.343408e-49
MsaG003288	MsaG046947	0.816367	9.953794e-52	1.992112e-49
MsaG003288	MsaG003538	0.811426	1.207860e-50	2.135808e-48
MsaG003288	MsaG008494	0.800770	2.063901e-48	2.839524e-46
MsaG003288	MsaG008553	0.812121	8.543004e-51	1.536560e-48
MsaG003288	MsaG010012	0.816176	1.098103e-51	2.186984e-49
MsaG003288	MsaG009542	0.820133	1.411231e-52	3.114915e-50
MsaG003288	MsaG013064	0.818875	2.724139e-52	5.816435e-50
MsaG003288	MsaG013965	0.862848	7.514511e-64	6.519187e-61
MsaG003288	MsaG024399	0.853607	4.112350e-61	2.527789e-58
MsaG003288	MsaG019920	0.830029	6.643083e-55	1.924205e-52
MsaG003288	MsaG032708	0.802072	1.119785e-48	1.586722e-46
MsaG003288	MsaG032859	0.838333	5.628264e-57	2.085521e-54
MsaG003288	MsaG031968	0.802530	9.024140e-49	1.292195e-46
MsaG003288	MsaG033509	0.805513	2.177804e-49	3.341160e-47
MsaG003288	MsaG031902	0.801248	1.649934e-48	2.294492e-46
MsaG003288	MsaG031903	0.802466	9.297688e-49	1.329405e-46
MsaG003288	MsaG030523	0.836184	1.984678e-56	6.888229e-54
MsaG003288	MsaG033582	0.833920	7.339550e-56	2.380419e-53
MsaG003288	MsaG036352	0.809220	3.595372e-50	6.025118e-48
MsaG003288	MsaG038716	0.830980	3.898563e-55	1.160356e-52
MsaG003288	MsaG037163	0.812791	6.105107e-51	1.116562e-48
MsaG003288	MsaG035298	0.837276	1.048328e-56	3.760329e-54
MsaG003288	MsaG039770	0.845769	6.205260e-59	2.916481e-56
MsaG003288	MsaG043831	0.813410	4.474430e-51	8.310818e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	MtrunA17_Chr1g0183641	98.883	358	4	0	1	358	125	482	0.0	737
MsaG003288	MtrunA17_Chr7g0245601	53.803	355	156	5	2	352	441	791	5.46e-128	385
MsaG003288	MtrunA17_Chr4g0038761	50.559	358	167	4	2	352	87	441	6.13e-121	356
MsaG003288	MtrunA17_Chr7g0224271	34.127	378	220	10	1	354	302	674	2.14e-59	202
MsaG003288	MtrunA17_Chr3g0110971	33.952	377	213	9	1	352	221	586	1.62e-58	199
MsaG003288	MtrunA17_Chr8g0376381	34.066	364	215	10	1	352	171	521	1.33e-55	190
MsaG003288	MtrunA17_Chr4g0057291	35.135	370	218	10	3	353	296	662	1.56e-54	189
MsaG003288	MtrunA17_Chr4g0039661	32.979	376	210	11	2	352	196	554	4.11e-48	170
MsaG003288	MtrunA17_Chr2g0319091	32.708	373	218	12	3	352	216	578	2.48e-47	169
MsaG003288	MtrunA17_Chr1g0159461	32.000	375	220	12	2	352	228	591	1.43e-46	167
MsaG003288	MtrunA17_Chr2g0306641	32.609	368	224	11	1	352	127	486	1.88e-45	162
MsaG003288	MtrunA17_Chr3g0114841	31.250	384	228	11	4	357	127	504	4.76e-45	161
MsaG003288	MtrunA17_Chr3g0125811	31.635	373	224	11	2	352	206	569	1.93e-44	160
MsaG003288	MtrunA17_Chr5g0424131	31.842	380	231	9	1	354	123	500	1.68e-43	157
MsaG003288	MtrunA17_Chr4g0076091	33.770	305	184	8	64	354	244	544	2.02e-42	155
MsaG003288	MtrunA17_Chr8g0357601	32.368	380	217	12	1	352	184	551	6.11e-42	154
MsaG003288	MtrunA17_Chr1g0200401	30.997	371	207	15	22	352	97	458	2.25e-41	150
MsaG003288	MtrunA17_Chr4g0057891	30.933	375	230	12	3	354	153	521	4.42e-40	148
MsaG003288	MtrunA17_Chr3g0101141	30.081	369	233	12	3	352	179	541	5.20e-40	148
MsaG003288	MtrunA17_Chr5g0445331	30.376	372	232	12	3	352	165	531	1.18e-39	147
MsaG003288	MtrunA17_Chr2g0328391	27.807	374	240	11	3	353	303	669	3.49e-39	147
MsaG003288	MtrunA17_Chr5g0447691	29.620	368	236	10	3	352	181	543	1.41e-38	144
MsaG003288	MtrunA17_Chr7g0238891	28.378	370	239	12	3	352	376	739	9.04e-37	140
MsaG003288	MtrunA17_Chr3g0085681	26.139	417	241	10	1	355	27	438	6.84e-36	135
MsaG003288	MtrunA17_Chr4g0031711	27.056	377	239	13	3	352	365	732	1.05e-35	137
MsaG003288	MtrunA17_Chr4g0031701	26.471	374	243	11	3	351	258	624	1.81e-35	136
MsaG003288	MtrunA17_Chr2g0294471	28.267	375	241	10	1	352	206	575	1.84e-35	136
MsaG003288	MtrunA17_Chr4g0038851	27.635	427	232	13	1	355	50	471	3.29e-35	134
MsaG003288	MtrunA17_Chr4g0031731	25.668	374	246	10	3	351	258	624	3.69e-35	135
MsaG003288	MtrunA17_Chr4g0031721	29.111	371	235	13	3	352	320	683	2.22e-34	134
MsaG003288	MtrunA17_Chr2g0290241	29.236	301	195	8	68	354	130	426	5.71e-34	130
MsaG003288	MtrunA17_Chr4g0031741	28.267	375	233	14	2	352	287	649	1.57e-33	131
MsaG003288	MtrunA17_Chr2g0328341	28.726	369	241	11	1	352	274	637	4.45e-33	129
MsaG003288	MtrunA17_Chr2g0294461	26.984	378	245	12	1	352	212	584	5.09e-33	129
MsaG003288	MtrunA17_Chr7g0270031	27.198	364	246	9	4	352	194	553	3.21e-31	124
MsaG003288	MtrunA17_Chr2g0328381	27.913	369	244	11	1	352	277	640	4.60e-30	121
MsaG003288	MtrunA17_Chr2g0328411	25.806	372	245	12	2	352	292	653	4.77e-29	118
MsaG003288	MtrunA17_Chr5g0401131	27.559	381	240	15	1	352	116	489	5.57e-28	114
MsaG003288	MtrunA17_Chr2g0328371	33.473	239	143	8	69	294	4	239	9.52e-28	109
MsaG003288	MtrunA17_Chr3g0085361	26.316	342	190	9	71	355	16	352	2.82e-27	110
MsaG003288	MtrunA17_Chr2g0328431	26.075	372	244	13	2	352	292	653	7.40e-27	111
MsaG003288	MtrunA17_Chr5g0396491	32.292	192	123	3	3	189	60	249	1.31e-26	110
MsaG003288	MtrunA17_Chr5g0396491	34.483	145	91	4	213	355	338	480	7.57e-16	78.6
MsaG003288	MtrunA17_Chr8g0383981	26.364	330	219	10	36	352	177	495	6.51e-26	108
MsaG003288	MtrunA17_Chr4g0012071	25.000	364	234	11	9	354	210	552	6.62e-24	102
MsaG003288	MtrunA17_Chr2g0329591	24.339	378	255	10	2	352	77	450	1.20e-23	101
MsaG003288	MtrunA17_Chr2g0328401	25.496	353	237	12	2	336	293	637	3.13e-23	101
MsaG003288	MtrunA17_Chr2g0328361	25.341	367	231	11	1	352	276	614	7.97e-23	99.8
MsaG003288	MtrunA17_Chr7g0230731	29.693	293	184	12	73	354	448	729	1.02e-20	93.6
MsaG003288	MtrunA17_Chr1g0194621	24.927	341	233	11	32	352	180	517	1.59e-20	92.8
MsaG003288	MtrunA17_Chr7g0236851	27.100	369	244	13	1	352	296	656	2.32e-20	92.4
MsaG003288	MtrunA17_Chr7g0230771	29.352	293	185	13	73	354	451	732	1.18e-19	90.5
MsaG003288	MtrunA17_Chr6g0468561	25.538	372	250	10	1	352	297	661	1.35e-19	90.1
MsaG003288	MtrunA17_Chr4g0053901	23.558	416	245	15	1	352	61	467	1.67e-18	86.7
MsaG003288	MtrunA17_Chr5g0401421	23.261	417	247	17	1	352	37	445	1.61e-17	83.6
MsaG003288	MtrunA17_Chr8g0344101	23.773	387	244	12	3	352	227	599	5.49e-15	76.3
MsaG003288	MtrunA17_Chr8g0373561	23.826	298	205	10	69	354	255	542	5.32e-14	73.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	AT3G54220.1	53.315	362	158	5	2	356	296	653	3.49e-129	384
MsaG003288	AT5G41920.1	47.945	365	173	7	1	355	45	402	5.90e-112	332
MsaG003288	AT1G14920.1	34.239	368	223	11	1	357	174	533	5.75e-57	194
MsaG003288	AT2G01570.1	34.511	368	222	10	1	357	226	585	5.46e-56	192
MsaG003288	AT1G66350.1	34.722	360	216	9	1	352	157	505	6.68e-56	191
MsaG003288	AT3G03450.1	33.884	363	222	11	3	352	187	544	1.70e-55	190
MsaG003288	AT5G17490.1	33.889	360	220	12	3	352	164	515	9.43e-52	180
MsaG003288	AT5G66770.1	33.515	367	222	12	2	352	223	583	1.27e-50	178
MsaG003288	AT1G63100.1	33.511	376	223	11	3	353	256	629	8.14e-50	176
MsaG003288	AT1G63100.2	33.511	376	223	11	3	353	281	654	1.34e-49	176
MsaG003288	AT3G50650.1	33.631	336	201	10	35	352	210	541	1.72e-44	160
MsaG003288	AT2G04890.1	30.663	362	233	10	3	352	57	412	9.99e-43	153
MsaG003288	AT1G55580.1	33.108	296	180	7	74	352	150	444	1.58e-42	154
MsaG003288	AT1G50600.3	30.376	372	230	11	2	352	162	525	2.49e-38	144
MsaG003288	AT5G48150.1	29.459	370	235	11	3	352	126	489	2.91e-38	143
MsaG003288	AT5G48150.4	29.459	370	235	11	3	352	126	489	2.91e-38	143
MsaG003288	AT5G48150.2	29.459	370	235	11	3	352	126	489	2.91e-38	143
MsaG003288	AT5G48150.3	29.459	370	235	11	3	352	126	489	2.91e-38	143
MsaG003288	AT1G50600.2	30.376	372	230	11	2	352	237	600	4.98e-38	144
MsaG003288	AT1G50600.1	30.376	372	230	11	2	352	233	596	5.05e-38	144
MsaG003288	AT1G21450.1	31.267	371	227	11	3	352	229	592	2.06e-37	142
MsaG003288	AT1G07530.1	29.333	375	240	12	3	357	400	769	8.44e-37	141
MsaG003288	AT1G07520.2	27.005	374	248	9	3	353	158	529	3.04e-36	138
MsaG003288	AT1G07520.4	27.005	374	248	9	3	353	158	529	3.04e-36	138
MsaG003288	AT1G07520.3	27.005	374	248	9	3	353	323	694	1.43e-35	137
MsaG003288	AT1G07520.1	27.005	374	248	9	3	353	322	693	1.44e-35	137
MsaG003288	AT2G29065.1	27.704	379	238	11	3	352	256	627	4.08e-35	135
MsaG003288	AT4G08250.1	29.006	362	230	11	18	358	128	483	2.11e-34	132
MsaG003288	AT2G29060.2	26.882	372	249	10	1	352	286	654	6.33e-33	129
MsaG003288	AT5G59450.1	25.858	379	242	13	2	352	230	597	7.02e-33	129
MsaG003288	AT2G29060.1	26.882	372	249	10	1	352	323	691	7.92e-33	129
MsaG003288	AT4G17230.1	29.189	370	239	10	1	352	160	524	1.23e-31	125
MsaG003288	AT4G17230.2	29.189	370	239	10	1	352	160	524	1.23e-31	125
MsaG003288	AT3G46600.2	26.810	373	244	11	1	352	6	370	1.28e-31	123
MsaG003288	AT3G46600.3	26.810	373	244	11	1	352	182	546	2.20e-30	122
MsaG003288	AT3G46600.1	26.810	373	244	11	1	352	214	578	2.55e-30	122
MsaG003288	AT4G37650.1	25.773	388	245	14	1	352	148	528	9.92e-28	114
MsaG003288	AT5G52510.1	27.676	383	233	13	1	352	270	639	1.79e-26	111
MsaG003288	AT2G37650.2	24.324	370	256	11	1	352	337	700	6.75e-26	109
MsaG003288	AT2G37650.1	24.324	370	256	11	1	352	349	712	7.50e-26	109
MsaG003288	AT3G49950.1	25.393	382	249	13	1	352	32	407	6.90e-24	102
MsaG003288	AT1G50420.1	30.102	196	128	4	1	189	59	252	9.20e-22	96.7
MsaG003288	AT1G50420.1	34.694	147	88	5	213	355	339	481	3.89e-16	79.7
MsaG003288	AT2G45160.1	24.929	353	211	13	32	354	312	640	4.73e-20	92.0
MsaG003288	AT3G60630.1	26.797	306	195	10	68	354	328	623	9.88e-20	90.9
MsaG003288	AT4G00150.1	27.666	347	217	15	24	357	233	558	6.18e-19	88.6
MsaG003288	AT3G13840.1	25.066	379	234	14	3	352	152	509	2.27e-18	86.7
MsaG003288	AT4G36710.1	24.407	295	205	9	69	352	197	484	1.26e-15	78.2

Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACCCTATAGCATGTAAATT+TGG	0.224828	1:-54359901	MsaT003288.1:CDS
TAGCATTCATATCATTGATT+TGG	0.267686	1:-54360094	MsaT003288.1:CDS
ATGATCCAAGTGAATCAAAA+AGG	0.269992	1:+54359659	None:intergenic
TTTGAGACTTCTTGAAGAAT+TGG	0.271799	1:-54359773	MsaT003288.1:CDS
GTTGGACTTGTAGAACTTCT+AGG	0.281331	1:-54359339	MsaT003288.1:CDS
ATGTTTCCATGTTACAAATT+AGG	0.299869	1:-54359867	MsaT003288.1:CDS
TCACCAAATTTACATGCTAT+AGG	0.333976	1:+54359898	None:intergenic
CACCAAATTTACATGCTATA+GGG	0.337950	1:+54359899	None:intergenic
GTGAAGAAAAGTTTAGGCTT+TGG	0.358361	1:-54359537	MsaT003288.1:CDS
GCCATTGAATTAGCACTCAT+TGG	0.370427	1:+54359475	None:intergenic
GTTTGTATACTGCTTCTTGT+TGG	0.371179	1:-54359357	MsaT003288.1:CDS
ATGAGACACTTGCAGTTCAT+TGG	0.379453	1:-54359840	MsaT003288.1:CDS
TATAGTCTTGCTCAAGTTGA+TGG	0.384763	1:-54359409	MsaT003288.1:CDS
TGCATAGTGATGATTCTAAC+AGG	0.385974	1:-54359633	MsaT003288.1:CDS
CATTCTTTGTATGATTCAAC+TGG	0.386760	1:-54359811	MsaT003288.1:CDS
CTCAAGTTGATGGCATGTTA+AGG	0.419170	1:-54359399	MsaT003288.1:CDS
AATGTGAAAATTTGATGAAA+GGG	0.441329	1:+54360160	None:intergenic
ATCAACAATATATTAGCAAT+TGG	0.455848	1:-54359577	MsaT003288.1:CDS
GAAGTGGTGAAGAAAAGTTT+AGG	0.462022	1:-54359543	MsaT003288.1:CDS
GCAATTTCAGTTGAAAATCA+TGG	0.462156	1:-54360375	MsaT003288.1:CDS
ATGATTCAACTGGACCTGAT+TGG	0.462834	1:-54359801	MsaT003288.1:CDS
AATGCTATTACAACGGTTCA+CGG	0.473963	1:+54360110	None:intergenic
CGGCCTTCAGTTCGAATGAC+CGG	0.476526	1:-54360009	MsaT003288.1:CDS
ATGGAACTTCTTGTTGAGAC+GGG	0.483246	1:-54359973	MsaT003288.1:CDS
GACCGGGATGGGAGCATCGA+TGG	0.487077	1:-54359992	MsaT003288.1:CDS
ATATCATGCAAGGGCTTCAA+TGG	0.488838	1:-54360071	MsaT003288.1:CDS
ATGGCATGTTAAGGCTTGGT+TGG	0.496635	1:-54359390	MsaT003288.1:CDS
TCACGGCTTCGAGAATTGCT+TGG	0.498738	1:+54360127	None:intergenic
TCACATACTCGCGACTCGAA+TGG	0.516098	1:-54360037	MsaT003288.1:CDS
TCCAATGAGTGCTAATTCAA+TGG	0.516236	1:-54359476	MsaT003288.1:CDS
GTAGAACAAGATGTTAACAT+TGG	0.523714	1:-54359730	MsaT003288.1:CDS
TGAACTGCAAGTGTCTCATT+AGG	0.524179	1:+54359844	None:intergenic
AACAATATATTAGCAATTGG+TGG	0.529310	1:-54359574	MsaT003288.1:CDS
TCAGTTCGAATGACCGGGAT+GGG	0.530352	1:-54360003	MsaT003288.1:CDS
GAACAAGATGTTAACATTGG+AGG	0.531900	1:-54359727	MsaT003288.1:CDS
CATACTCGCGACTCGAATGG+AGG	0.534467	1:-54360034	MsaT003288.1:CDS
ATCCCGGTCATTCGAACTGA+AGG	0.539893	1:+54360006	None:intergenic
ATTGATTTGGATATCATGCA+AGG	0.540452	1:-54360081	MsaT003288.1:CDS
AGAGTGATGAATACATGGCT+TGG	0.543301	1:-54360249	MsaT003288.1:CDS
TTCCATCGATGCTCCCATCC+CGG	0.545444	1:+54359990	None:intergenic
AACATGTATTCACCAGCTCA+TGG	0.559958	1:-54359433	MsaT003288.1:CDS
TGATATGAATGCTATTACAA+CGG	0.565293	1:+54360103	None:intergenic
AACAAGATGTTAACATTGGA+GGG	0.567098	1:-54359726	MsaT003288.1:CDS
CACTTGTAGAGAAGAATGAA+TGG	0.567099	1:+54360197	None:intergenic
AAATGTGAAAATTTGATGAA+AGG	0.571299	1:+54360159	None:intergenic
GATGGAACTTCTTGTTGAGA+CGG	0.571703	1:-54359974	MsaT003288.1:CDS
ATTAGGCCTAATTTGTAACA+TGG	0.571929	1:+54359861	None:intergenic
AATGCAATGAACCAACAAAA+CGG	0.577957	1:+54359692	None:intergenic
GGCCTTCAGTTCGAATGACC+GGG	0.584830	1:-54360008	MsaT003288.1:CDS
AACAGGAACATTGTTGAACA+TGG	0.588599	1:-54359616	MsaT003288.1:CDS
TTCAGTTGAAAATCATGGTG+AGG	0.588959	1:-54360370	MsaT003288.1:CDS
ATGTGAAAATTTGATGAAAG+GGG	0.589901	1:+54360161	None:intergenic
TTGATTTGGATATCATGCAA+GGG	0.592147	1:-54360080	MsaT003288.1:CDS
TTCAGTTCGAATGACCGGGA+TGG	0.594862	1:-54360004	MsaT003288.1:CDS
GTTGATGGCATGTTAAGGCT+TGG	0.599004	1:-54359394	MsaT003288.1:CDS
TTAGTAGAGTGATGAATACA+TGG	0.620787	1:-54360254	MsaT003288.1:CDS
ATGGTTCTATGATCAATCAA+AGG	0.621623	1:+54360216	None:intergenic
ATACTCGCGACTCGAATGGA+GGG	0.625698	1:-54360033	MsaT003288.1:CDS
GCAAGACTATAACCATGAGC+TGG	0.626630	1:+54359421	None:intergenic
ATTGGTGGACCTAAGAGAAG+TGG	0.635188	1:-54359559	MsaT003288.1:CDS
CCTTCTAATGGAATGTGCAG+TGG	0.643323	1:-54360397	None:intergenic
TGGAACTTCTTGTTGAGACG+GGG	0.658302	1:-54359972	MsaT003288.1:CDS
TCGCGACTCGAATGGAGGGT+CGG	0.673281	1:-54360029	MsaT003288.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	54359336	54360412	54359336	ID=MsaG003288
Chr1	mRNA	54359336	54360412	54359336	ID=MsaT003288.1;Parent=MsaG003288
Chr1	exon	54359336	54360412	54359336	ID=MsaT003288.1.exon1;Parent=MsaT003288.1
Chr1	CDS	54359336	54360412	54359336	ID=cds.MsaT003288.1;Parent=MsaT003288.1

Gene Sequence

>MsaT003288.1

ATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAGGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACTTCAAGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATGGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCCGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGATATCATGCAAGGGCTTCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGGCCTTCAGTTCGAATGACCGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTTGCAAGAAGGCTCGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGCTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATACTGCTTCTTGTTGGACTTGTAGAACTTCTAGGTAG

Protein sequence

>MsaT003288.1

MECAVAISVENHGEAHRMLLELTQLASPYKTSSAERVVAYFAKAMISRVMNTWLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELAARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYTASCWTCRTSR*