AlfalfaGEDB | MsaG003288

M. sativa ssp. caerulea / MsaG003288

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	KEH42497.1	98.883	358	4	0	1	358	111	468	0.0	737

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	sp\|Q9M384\|SCR_ARATH	53.315	362	158	5	2	356	296	653	3.43e-128	384

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	tr\|A0A396JRA5\|A0A396JRA5_MEDTR	98.883	358	4	0	1	358	125	482	0.0	737

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003288	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000034	MsaG003288	0.859461	7.981646e-63	6.079930e-60
MsaG001156	MsaG003288	0.852972	6.241507e-61	3.751695e-58
MsaG001178	MsaG003288	0.832778	1.409254e-55	4.419912e-53
MsaG001179	MsaG003288	0.865836	8.858731e-65	8.653644e-62
MsaG001413	MsaG003288	0.809063	3.882930e-50	6.482852e-48
MsaG001414	MsaG003288	0.828337	1.700926e-54	4.695712e-52
MsaG001415	MsaG003288	0.828786	1.326959e-54	3.709450e-52
MsaG002016	MsaG003288	0.882079	2.994230e-70	5.956191e-67
MsaG002218	MsaG003288	0.803608	5.412417e-49	7.944897e-47
MsaG003083	MsaG003288	0.840016	2.070243e-57	8.086222e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	MtrunA17_Chr1g0183641	98.883	358	4	0	1	358	125	482	0.0	737
MsaG003288	MtrunA17_Chr7g0245601	53.803	355	156	5	2	352	441	791	5.46e-128	385
MsaG003288	MtrunA17_Chr4g0038761	50.559	358	167	4	2	352	87	441	6.13e-121	356
MsaG003288	MtrunA17_Chr7g0224271	34.127	378	220	10	1	354	302	674	2.14e-59	202
MsaG003288	MtrunA17_Chr3g0110971	33.952	377	213	9	1	352	221	586	1.62e-58	199
MsaG003288	MtrunA17_Chr8g0376381	34.066	364	215	10	1	352	171	521	1.33e-55	190
MsaG003288	MtrunA17_Chr4g0057291	35.135	370	218	10	3	353	296	662	1.56e-54	189
MsaG003288	MtrunA17_Chr4g0039661	32.979	376	210	11	2	352	196	554	4.11e-48	170
MsaG003288	MtrunA17_Chr2g0319091	32.708	373	218	12	3	352	216	578	2.48e-47	169
MsaG003288	MtrunA17_Chr1g0159461	32.000	375	220	12	2	352	228	591	1.43e-46	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003288	AT3G54220.1	53.315	362	158	5	2	356	296	653	3.49e-129	384
MsaG003288	AT5G41920.1	47.945	365	173	7	1	355	45	402	5.90e-112	332
MsaG003288	AT1G14920.1	34.239	368	223	11	1	357	174	533	5.75e-57	194
MsaG003288	AT2G01570.1	34.511	368	222	10	1	357	226	585	5.46e-56	192
MsaG003288	AT1G66350.1	34.722	360	216	9	1	352	157	505	6.68e-56	191
MsaG003288	AT3G03450.1	33.884	363	222	11	3	352	187	544	1.70e-55	190
MsaG003288	AT5G17490.1	33.889	360	220	12	3	352	164	515	9.43e-52	180
MsaG003288	AT5G66770.1	33.515	367	222	12	2	352	223	583	1.27e-50	178
MsaG003288	AT1G63100.1	33.511	376	223	11	3	353	256	629	8.14e-50	176
MsaG003288	AT1G63100.2	33.511	376	223	11	3	353	281	654	1.34e-49	176

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Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGAAAATTTGATGAA+AGG	0.571299	1:+54360159	None:intergenic
AACAAGATGTTAACATTGGA+GGG	0.567098	1:-54359726	MsaT003288.1:CDS
AACAATATATTAGCAATTGG+TGG	0.529310	1:-54359574	MsaT003288.1:CDS
AACAGGAACATTGTTGAACA+TGG	0.588599	1:-54359616	MsaT003288.1:CDS
AACATGTATTCACCAGCTCA+TGG	0.559958	1:-54359433	MsaT003288.1:CDS
AATGCAATGAACCAACAAAA+CGG	0.577957	1:+54359692	None:intergenic
AATGCTATTACAACGGTTCA+CGG	0.473963	1:+54360110	None:intergenic
AATGTGAAAATTTGATGAAA+GGG	0.441329	1:+54360160	None:intergenic
AGAGTGATGAATACATGGCT+TGG	0.543301	1:-54360249	MsaT003288.1:CDS
ATACTCGCGACTCGAATGGA+GGG	0.625698	1:-54360033	MsaT003288.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	54359336	54360412	54359336	ID=MsaG003288
Chr1	mRNA	54359336	54360412	54359336	ID=MsaT003288.1;Parent=MsaG003288
Chr1	exon	54359336	54360412	54359336	ID=MsaT003288.1.exon1;Parent=MsaT003288.1
Chr1	CDS	54359336	54360412	54359336	ID=cds.MsaT003288.1;Parent=MsaT003288.1

Gene Sequence

>MsaT003288.1

ATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAGGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACTTCAAGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATGGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCCGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGATATCATGCAAGGGCTTCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGGCCTTCAGTTCGAATGACCGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTTGCAAGAAGGCTCGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGCTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATACTGCTTCTTGTTGGACTTGTAGAACTTCTAGGTAG

Protein sequence

>MsaT003288.1

MECAVAISVENHGEAHRMLLELTQLASPYKTSSAERVVAYFAKAMISRVMNTWLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELAARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYTASCWTCRTSR*