AlfalfaGEDB | MsaG003299

M. sativa ssp. caerulea / MsaG003299

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003299	GAU41964.1	100.000	57	0	0	1	57	1	57	1.05e-34	122

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003299	sp\|Q84TD6\|NAC47_ARATH	48.214	56	29	0	4	59	4	59	2.54e-14	68.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003299	tr\|A0A2Z6NB54\|A0A2Z6NB54_TRISU	100.000	57	0	0	1	57	1	57	5.03e-35	122

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003299	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG003299	0.833789	7.914175e-56	2.556871e-53
MsaG000234	MsaG003299	0.812329	7.696428e-51	1.391511e-48
MsaG000364	MsaG003299	0.883795	7.100795e-71	1.534327e-67
MsaG000379	MsaG003299	0.806016	1.709219e-49	2.653433e-47
MsaG000479	MsaG003299	0.829539	8.734215e-55	2.494572e-52
MsaG000520	MsaG003299	0.865381	1.231353e-64	1.181172e-61
MsaG000553	MsaG003299	0.822228	4.666655e-53	1.088868e-50
MsaG000842	MsaG003299	0.803760	5.036619e-49	7.419374e-47
MsaG001283	MsaG003299	0.800881	1.958846e-48	2.701681e-46
MsaG001307	MsaG003299	0.835215	3.481257e-56	1.173590e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003299	MtrunA17_Chr1g0183741	96.610	59	2	1	59	1	59	1.07e-37	125
MsaG003299	MtrunA17_Chr7g0261411	88.136	59	7	1	59	1	59	2.50e-33	114
MsaG003299	MtrunA17_Chr2g0309891	53.846	52	24	9	60	5	56	2.11e-15	67.8
MsaG003299	MtrunA17_Chr4g0060931	49.091	55	28	5	59	12	66	2.24e-15	67.8
MsaG003299	MtrunA17_Chr5g0433781	56.250	48	21	9	56	5	52	4.44e-15	67.4
MsaG003299	MtrunA17_Chr3g0109821	56.250	48	21	9	56	5	52	4.72e-15	67.0
MsaG003299	MtrunA17_Chr3g0091921	54.000	50	23	10	59	16	65	1.52e-14	65.5
MsaG003299	MtrunA17_Chr6g0481091	50.980	51	25	10	60	6	56	1.57e-14	64.7
MsaG003299	MtrunA17_Chr3g0113011	50.000	48	24	9	56	18	65	1.63e-14	61.2
MsaG003299	MtrunA17_Chr2g0316971	53.061	49	23	8	56	21	69	2.19e-14	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003299	AT4G28530.2	54.167	72	17	2	1	56	1	72	1.11e-19	79.7
MsaG003299	AT4G28530.1	54.167	72	17	2	1	56	1	72	1.97e-19	79.3
MsaG003299	AT1G65910.1	56.250	48	21	0	9	56	5	52	1.30e-15	69.3
MsaG003299	AT3G04070.1	48.214	56	29	0	4	59	4	59	2.58e-15	68.2
MsaG003299	AT5G17260.1	54.167	48	22	0	9	56	5	52	2.92e-15	68.2
MsaG003299	AT3G04070.2	48.214	56	29	0	4	59	4	59	3.62e-15	67.8
MsaG003299	AT5G53950.1	55.319	47	21	0	10	56	17	63	5.94e-15	67.0
MsaG003299	AT3G03200.1	54.167	48	22	0	9	56	5	52	6.07e-15	67.4
MsaG003299	AT3G18400.1	49.020	51	26	0	9	59	4	54	2.14e-14	65.5
MsaG003299	AT5G61430.1	52.000	50	24	0	10	59	16	65	2.43e-14	65.5

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Find 15 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAATGAGGATGTTCTCAA+GGG	0.646017	1:+54532433	MsaT003299.1:CDS
ACTTGCATACATGCGAGCCT+TGG	0.522819	1:+54532473	MsaT003299.1:CDS
AGGACCAATTCTTCATCACT+AGG	0.581995	1:-54532388	None:intergenic
AGGATAAAATCGAAAGCCAG+GGG	0.675897	1:-54532368	None:intergenic
ATCATGGGTCTTAGAGATGT+CGG	0.583109	1:+54532334	None:intergenic
ATGCAAGTCAATTTCCTCCA+AGG	0.605909	1:-54532458	None:intergenic
CACAAATGAGGATGTTCTCA+AGG	0.510472	1:+54532432	MsaT003299.1:CDS
CTAGGATAAAATCGAAAGCC+AGG	0.494510	1:-54532370	None:intergenic
GGATAAAATCGAAAGCCAGG+GGG	0.720221	1:-54532367	None:intergenic
GGATGTTCTCAAGGGTACCT+TGG	0.551085	1:+54532441	MsaT003299.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	54532337	54534733	54532337	ID=MsaG003299
Chr1	mRNA	54532337	54534733	54532337	ID=MsaT003299.1;Parent=MsaG003299
Chr1	exon	54532337	54532505	54532337	ID=MsaT003299.1.exon1;Parent=MsaT003299.1
Chr1	CDS	54532337	54532505	54532337	ID=cds.MsaT003299.1;Parent=MsaT003299.1
Chr1	exon	54534717	54534733	54534717	ID=MsaT003299.1.exon2;Parent=MsaT003299.1
Chr1	CDS	54534717	54534733	54534717	ID=cds.MsaT003299.1;Parent=MsaT003299.1

Gene Sequence	>MsaT003299.1 ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCCCCTGGCTTTCGATTTTATCCTAGTGATGAAGAATTGGTCCTTCATTACCTTTACAAAAAAATCACAAATGAGGATGTTCTCAAGGGTACCTTGGAGGAAATTGACTTGCATACATGCGAGCCTTGGCAACTTCCTGTTTACGCGTTTGCATAA
Protein sequence	>MsaT003299.1 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPVYAFA*