AlfalfaGEDB | MsaG003383

M. sativa ssp. caerulea / MsaG003383

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009566 GO:0009567 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019953 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003383	XP_003590536.1	99.645	282	1	0	1	282	1	282	0.0	576

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003383	sp\|O22768\|UNE12_ARATH	70.358	307	64	7	2	281	3	309	9.14e-129	371

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003383	tr\|G7ICM9\|G7ICM9_MEDTR	99.645	282	1	0	1	282	1	282	0.0	576

TFs/TRs:

Gene ID	Type	Classification
MsaG003383	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000707	MsaG003383	0.817080	6.902568e-52	1.407012e-49
MsaG003383	MsaG003715	0.803701	5.179701e-49	7.619806e-47
MsaG003383	MsaG004347	0.809982	2.470502e-50	4.217026e-48
MsaG003383	MsaG004441	0.820586	1.112258e-52	2.484461e-50
MsaG003383	MsaG004446	0.864042	3.217848e-64	2.926286e-61
MsaG003383	MsaG005101	0.812909	5.756010e-51	1.055806e-48
MsaG003383	MsaG005210	0.812514	7.016158e-51	1.274396e-48
MsaG003383	MsaG006122	0.808190	5.954335e-50	9.734134e-48
MsaG003383	MsaG006255	0.802665	8.465980e-49	1.216011e-46
MsaG003383	MsaG006657	0.821363	7.385568e-53	1.683961e-50
MsaG003383	MsaG006765	0.810578	1.840389e-50	3.187438e-48
MsaG003383	MsaG007000	0.813047	5.370602e-51	9.885238e-49
MsaG003383	MsaG007722	0.806281	1.504041e-49	2.349758e-47
MsaG003383	MsaG008036	0.810987	1.502095e-50	2.627665e-48
MsaG003383	MsaG009011	0.819621	1.846161e-52	4.019521e-50
MsaG003383	MsaG009725	0.837421	9.626079e-57	3.468596e-54
MsaG003383	MsaG009726	0.806110	1.634041e-49	2.542405e-47
MsaG003383	MsaG012109	0.805586	2.102238e-49	3.230801e-47
MsaG003383	MsaG012110	0.802252	1.028738e-48	1.463683e-46
MsaG003383	MsaG012467	0.801486	1.475632e-48	2.063205e-46
MsaG003383	MsaG016980	0.863259	5.617387e-64	4.952691e-61
MsaG003383	MsaG017719	0.801191	1.694780e-48	2.353841e-46
MsaG003383	MsaG018044	0.847122	2.663610e-59	1.309646e-56
MsaG003383	MsaG019951	0.815024	1.976279e-51	3.822632e-49
MsaG003383	MsaG020030	0.817713	4.977628e-52	1.031255e-49
MsaG003383	MsaG020765	0.804728	3.173306e-49	4.780553e-47
MsaG003383	MsaG023563	0.813454	4.374824e-51	8.134935e-49
MsaG003383	MsaG023535	0.801953	1.184375e-48	1.673689e-46
MsaG003383	MsaG023648	0.801791	1.278323e-48	1.799818e-46
MsaG003383	MsaG024114	0.801859	1.238273e-48	1.746126e-46
MsaG003383	MsaG027013	0.806785	1.179145e-49	1.864145e-47
MsaG003383	MsaG027055	0.825645	7.438271e-54	1.904611e-51
MsaG003383	MsaG029402	0.802657	8.496716e-49	1.220217e-46
MsaG003383	MsaG029655	0.807356	8.938815e-50	1.432352e-47
MsaG003383	MsaG034837	0.810143	2.281791e-50	3.910191e-48
MsaG003383	MsaG041931	0.800111	2.806949e-48	3.804637e-46
MsaG003383	MsaG042994	0.812831	5.985641e-51	1.095783e-48
MsaG003383	MsaG045105	0.809927	2.538369e-50	4.327135e-48
MsaG003383	MsaG045107	0.803583	5.477391e-49	8.035667e-47
MsaG003383	MsaG046113	0.804902	2.920061e-49	4.416884e-47
MsaG003383	MsaG046266	0.813489	4.299596e-51	8.001738e-49
MsaG003383	MsaG046530	0.808219	5.869521e-50	9.602219e-48
MsaG003383	MsaG046701	0.811358	1.249526e-50	2.205787e-48
MsaG003383	MsaG046754	0.803514	5.659929e-49	8.290292e-47
MsaG003383	MsaG047128	0.800161	2.742527e-48	3.721479e-46
MsaG003383	MsaG001949	0.839407	2.976560e-57	1.140523e-54
MsaG003383	MsaG002617	0.830761	4.407897e-55	1.303727e-52
MsaG003383	MsaG014164	0.806501	1.352564e-49	2.124096e-47
MsaG003383	MsaG012344	0.845874	5.813420e-59	2.741715e-56
MsaG003383	MsaG018513	0.819529	1.936646e-52	4.206593e-50
MsaG003383	MsaG023179	0.826106	5.787584e-54	1.501166e-51
MsaG003383	MsaG027316	0.806643	1.262917e-49	1.989932e-47
MsaG003383	MsaG027479	0.810598	1.822196e-50	3.157453e-48
MsaG003383	MsaG026803	0.808742	4.545968e-50	7.531530e-48
MsaG003383	MsaG031186	0.818367	3.548591e-52	7.477097e-50
MsaG003383	MsaG032718	0.887085	4.223256e-72	1.072085e-68
MsaG003383	MsaG033515	0.802559	8.901082e-49	1.275416e-46
MsaG003383	MsaG032134	0.818393	3.500363e-52	7.380571e-50
MsaG003383	MsaG032074	0.817596	5.289330e-52	1.092545e-49
MsaG003383	MsaG037912	0.807664	7.695911e-50	1.242296e-47
MsaG003383	MsaG042876	0.816293	1.034156e-51	2.065773e-49
MsaG003383	MsaG042303	0.810704	1.728953e-50	3.003622e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003383	MtrunA17_Chr1g0184841	99.645	282	1	0	1	282	1	282	0.0	576
MsaG003383	MtrunA17_Chr1g0190731	80.571	175	34	0	104	278	177	351	3.03e-97	290
MsaG003383	MtrunA17_Chr4g0074161	65.854	164	46	3	108	262	194	356	3.05e-63	204
MsaG003383	MtrunA17_Chr1g0152131	51.579	95	45	1	91	184	231	325	1.42e-22	96.3
MsaG003383	MtrunA17_Chr7g0234761	60.000	75	29	1	111	184	308	382	4.43e-22	95.5
MsaG003383	MtrunA17_Chr8g0339091	60.000	75	29	1	111	184	282	356	7.41e-22	94.7
MsaG003383	MtrunA17_Chr3g0131771	48.980	98	49	1	112	208	139	236	7.64e-22	93.2
MsaG003383	MtrunA17_Chr3g0144641	65.152	66	22	1	120	184	191	256	5.00e-21	91.7
MsaG003383	MtrunA17_Chr8g0365941	63.636	66	23	1	120	184	305	370	3.00e-20	90.1
MsaG003383	MtrunA17_Chr4g0035101	63.636	66	23	1	120	184	143	208	3.56e-20	89.0
MsaG003383	MtrunA17_Chr5g0415291	56.000	75	32	1	111	184	103	177	5.69e-20	86.3
MsaG003383	MtrunA17_Chr5g0421111	62.687	67	24	1	119	184	364	430	6.84e-20	89.4
MsaG003383	MtrunA17_Chr8g0363921	60.606	66	25	1	120	184	151	216	1.44e-19	86.3
MsaG003383	MtrunA17_Chr8g0385911	50.588	85	37	2	119	202	144	224	1.67e-19	86.7
MsaG003383	MtrunA17_Chr4g0014771	62.121	66	24	1	119	183	117	182	1.99e-18	81.3
MsaG003383	MtrunA17_Chr1g0193321	50.000	74	33	1	122	195	464	533	7.33e-18	83.6
MsaG003383	MtrunA17_Chr1g0152651	58.462	65	27	0	119	183	273	337	1.23e-17	82.0
MsaG003383	MtrunA17_Chr1g0174271	54.667	75	33	1	113	186	291	365	1.58e-17	81.6
MsaG003383	MtrunA17_Chr3g0134741	48.780	82	42	0	119	200	228	309	2.62e-17	80.5
MsaG003383	MtrunA17_Chr1g0174161	48.864	88	39	3	119	205	159	241	3.28e-17	80.1
MsaG003383	MtrunA17_Chr6g0484271	57.576	66	27	1	120	184	155	220	3.74e-17	79.3
MsaG003383	MtrunA17_Chr1g0182791	50.000	72	32	1	122	193	319	386	3.96e-17	81.3
MsaG003383	MtrunA17_Chr5g0393721	56.923	65	28	0	119	183	223	287	5.49e-17	79.7
MsaG003383	MtrunA17_Chr1g0153241	42.697	89	44	2	100	188	71	152	6.80e-17	78.6
MsaG003383	MtrunA17_Chr7g0258161	56.716	67	28	1	119	184	172	238	3.53e-16	77.4
MsaG003383	MtrunA17_Chr7g0270871	53.571	56	26	0	131	186	213	268	3.99e-16	77.4
MsaG003383	MtrunA17_Chr1g0207311	51.316	76	37	0	108	183	184	259	4.56e-16	76.6
MsaG003383	MtrunA17_Chr7g0262691	45.070	71	39	0	122	192	254	324	6.67e-16	77.4
MsaG003383	MtrunA17_Chr3g0134001	48.750	80	40	1	113	192	164	242	1.33e-15	75.1
MsaG003383	MtrunA17_Chr7g0271251	47.368	76	37	1	122	197	434	506	1.44e-15	76.6
MsaG003383	MtrunA17_Chr8g0351881	52.174	69	32	1	119	186	315	383	1.62e-15	75.9
MsaG003383	MtrunA17_Chr7g0258181	45.882	85	36	2	103	186	235	310	2.14e-15	75.1
MsaG003383	MtrunA17_Chr3g0095391	49.206	63	32	0	122	184	311	373	2.35e-15	75.9
MsaG003383	MtrunA17_Chr4g0032951	53.623	69	31	1	119	186	354	422	2.38e-15	75.5
MsaG003383	MtrunA17_Chr5g0435021	41.304	92	50	2	93	183	193	281	3.03e-15	74.3
MsaG003383	MtrunA17_Chr2g0329041	54.688	64	28	1	119	181	331	394	9.29e-15	73.9
MsaG003383	MtrunA17_Chr1g0207301	47.059	68	36	0	116	183	284	351	1.01e-14	73.6
MsaG003383	MtrunA17_Chr5g0402031	41.304	92	46	2	131	217	116	204	1.27e-14	73.2
MsaG003383	MtrunA17_Chr8g0384141	49.333	75	38	0	108	182	102	176	1.31e-14	72.0
MsaG003383	MtrunA17_Chr1g0185741	33.333	126	72	1	126	251	190	303	2.24e-14	72.0
MsaG003383	MtrunA17_Chr3g0087771	53.030	66	30	1	119	183	321	386	7.07e-14	71.2
MsaG003383	MtrunA17_Chr7g0231461	43.750	64	36	0	120	183	297	360	1.70e-12	67.4
MsaG003383	MtrunA17_Chr7g0243041	47.170	53	28	0	127	179	33	85	5.29e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003383	AT4G02590.2	70.358	307	64	7	2	281	3	309	9.30e-130	371
MsaG003383	AT4G02590.1	70.358	307	64	7	2	281	3	309	9.30e-130	371
MsaG003383	AT4G02590.3	78.723	235	44	4	53	281	12	246	2.00e-115	332
MsaG003383	AT1G03040.1	68.919	296	62	8	8	282	16	302	1.61e-112	327
MsaG003383	AT1G03040.3	63.240	321	69	7	8	282	16	333	3.77e-108	317
MsaG003383	AT1G03040.2	67.797	295	62	9	8	282	16	297	4.71e-108	315
MsaG003383	AT2G24260.2	65.359	153	48	2	113	262	28	178	1.28e-62	198
MsaG003383	AT2G24260.1	65.359	153	48	2	113	262	131	281	1.49e-60	196
MsaG003383	AT5G58010.1	49.541	218	81	5	72	276	62	263	3.12e-60	193
MsaG003383	AT4G30980.1	57.714	175	64	2	106	280	116	280	6.67e-59	190
MsaG003383	AT4G30980.2	57.714	175	64	2	106	280	164	328	1.14e-58	191
MsaG003383	AT5G50915.3	53.333	90	37	2	112	200	128	213	2.68e-23	96.3
MsaG003383	AT5G50915.4	53.333	90	37	2	112	200	128	213	2.68e-23	96.3
MsaG003383	AT5G50915.1	53.333	90	37	2	112	200	128	213	3.12e-23	96.7
MsaG003383	AT5G50915.2	53.333	90	37	2	112	200	128	213	3.12e-23	96.7
MsaG003383	AT5G48560.2	61.333	75	28	1	111	184	292	366	3.67e-22	95.9
MsaG003383	AT5G48560.1	61.333	75	28	1	111	184	292	366	3.77e-22	96.3
MsaG003383	AT3G23690.1	45.378	119	55	3	67	184	147	256	4.77e-21	92.0
MsaG003383	AT1G10120.2	64.179	67	23	1	119	184	205	271	9.73e-21	90.9
MsaG003383	AT1G10120.1	64.179	67	23	1	119	184	205	271	9.73e-21	90.9
MsaG003383	AT3G07340.1	64.179	67	23	1	119	184	257	323	1.44e-20	91.3
MsaG003383	AT3G07340.2	65.152	66	22	1	120	184	258	323	1.53e-20	91.3
MsaG003383	AT4G34530.1	62.687	67	24	1	119	184	171	237	1.57e-20	90.1
MsaG003383	AT1G68920.3	63.636	66	23	1	120	184	302	367	2.48e-20	90.9
MsaG003383	AT1G68920.1	63.636	66	23	1	120	184	303	368	2.54e-20	90.9
MsaG003383	AT1G68920.4	63.636	66	23	1	120	184	303	368	2.54e-20	90.9
MsaG003383	AT1G68920.2	63.636	66	23	1	120	184	303	368	2.54e-20	90.9
MsaG003383	AT5G62610.2	37.594	133	67	3	111	227	144	276	4.69e-20	87.8
MsaG003383	AT5G62610.1	37.594	133	67	3	111	227	144	276	4.69e-20	87.8
MsaG003383	AT1G26260.3	52.273	88	36	3	119	205	171	253	7.49e-20	88.2
MsaG003383	AT1G26260.5	52.273	88	36	3	119	205	200	282	7.49e-20	88.6
MsaG003383	AT1G26260.4	52.273	88	36	3	119	205	222	304	1.02e-19	88.6
MsaG003383	AT1G26260.1	52.273	88	36	3	119	205	222	304	1.02e-19	88.6
MsaG003383	AT1G26260.6	52.273	88	36	3	119	205	222	304	1.02e-19	88.6
MsaG003383	AT1G26260.2	52.273	88	36	3	119	205	222	304	1.02e-19	88.6
MsaG003383	AT4G33880.1	51.685	89	43	0	116	204	262	350	2.34e-19	87.0
MsaG003383	AT2G18300.1	60.606	66	25	1	120	184	185	250	2.38e-19	86.7
MsaG003383	AT2G18300.2	60.606	66	25	1	120	184	185	250	2.40e-19	86.7
MsaG003383	AT2G18300.3	60.606	66	25	1	120	184	185	250	3.33e-19	86.7
MsaG003383	AT1G25330.1	52.326	86	39	2	112	196	96	180	3.65e-19	84.3
MsaG003383	AT1G59640.1	60.606	66	25	1	120	184	136	201	4.82e-19	84.7
MsaG003383	AT1G73830.2	62.121	66	24	1	120	184	147	212	4.90e-19	84.7
MsaG003383	AT1G73830.1	62.121	66	24	1	120	184	147	212	5.19e-19	84.7
MsaG003383	AT4G36540.2	59.091	66	26	1	120	184	141	206	8.85e-19	84.7
MsaG003383	AT4G36540.1	59.091	66	26	1	120	184	141	206	9.07e-19	84.7
MsaG003383	AT2G14760.1	50.575	87	43	0	116	202	233	319	1.17e-18	84.7
MsaG003383	AT1G59640.2	60.606	66	25	1	120	184	136	201	1.49e-18	84.7
MsaG003383	AT1G18400.2	56.000	75	31	2	119	192	144	217	2.20e-18	82.8
MsaG003383	AT1G18400.1	60.606	66	25	1	120	184	145	210	4.40e-18	82.0
MsaG003383	AT3G57800.2	39.416	137	58	3	120	231	204	340	4.93e-18	83.6
MsaG003383	AT1G27740.1	43.158	95	53	1	90	183	136	230	9.34e-18	81.3
MsaG003383	AT2G42300.1	43.697	119	54	5	119	229	184	297	2.15e-17	81.3
MsaG003383	AT4G09180.1	60.606	66	25	1	119	183	183	248	2.84e-17	79.7
MsaG003383	AT1G09530.3	50.000	64	32	0	122	185	339	402	4.23e-17	81.3
MsaG003383	AT1G09530.2	50.000	64	32	0	122	185	339	402	4.23e-17	81.3
MsaG003383	AT1G09530.5	50.000	64	32	0	122	185	339	402	4.23e-17	81.3
MsaG003383	AT1G09530.1	50.000	64	32	0	122	185	339	402	4.23e-17	81.3
MsaG003383	AT1G09530.4	50.000	64	32	0	122	185	339	402	4.23e-17	81.3
MsaG003383	AT1G09530.6	50.000	64	32	0	122	185	339	402	4.23e-17	81.3
MsaG003383	AT1G35460.1	60.606	66	25	1	119	183	180	245	6.22e-17	79.0
MsaG003383	AT2G42300.4	54.023	87	34	4	120	205	185	266	7.89e-17	79.0
MsaG003383	AT2G42280.1	56.522	69	29	1	119	186	278	346	8.26e-17	79.7
MsaG003383	AT2G20180.7	50.794	63	31	0	122	184	209	271	9.96e-17	80.1
MsaG003383	AT2G20180.1	50.794	63	31	0	122	184	209	271	9.96e-17	80.1
MsaG003383	AT2G20180.5	50.794	63	31	0	122	184	209	271	9.96e-17	80.1
MsaG003383	AT2G20180.4	50.794	63	31	0	122	184	280	342	1.36e-16	79.7
MsaG003383	AT2G20180.6	50.794	63	31	0	122	184	280	342	1.36e-16	79.7
MsaG003383	AT2G20180.2	50.794	63	31	0	122	184	280	342	1.36e-16	79.7
MsaG003383	AT2G20180.3	50.794	63	31	0	122	184	280	342	1.36e-16	79.7
MsaG003383	AT2G14760.3	45.000	100	42	1	116	202	233	332	2.88e-16	78.2
MsaG003383	AT5G43175.1	49.275	69	35	0	115	183	127	195	3.01e-16	76.3
MsaG003383	AT2G42280.3	59.375	64	25	1	119	181	278	341	8.79e-16	77.0
MsaG003383	AT2G20180.8	51.667	60	29	0	122	181	280	339	1.32e-15	76.3
MsaG003383	AT1G51140.1	55.072	69	30	1	119	186	303	371	5.69e-15	74.7
MsaG003383	AT3G21330.1	60.714	56	22	0	127	182	276	331	1.17e-14	73.6
MsaG003383	AT1G66470.1	47.945	73	37	1	129	200	204	276	1.64e-14	72.8
MsaG003383	AT5G37800.1	47.945	73	37	1	129	200	210	282	2.51e-14	72.0
MsaG003383	AT4G36930.1	50.847	59	29	0	126	184	197	255	4.28e-14	72.0
MsaG003383	AT5G67110.1	50.847	59	28	1	131	188	98	156	1.06e-13	68.9
MsaG003383	AT4G28790.1	44.118	68	38	0	117	184	268	335	2.06e-13	70.1
MsaG003383	AT4G00050.2	45.312	64	35	0	120	183	105	168	2.49e-13	69.3
MsaG003383	AT4G00050.1	45.312	64	35	0	120	183	207	270	4.95e-13	68.9
MsaG003383	AT4G00050.3	45.312	64	35	0	120	183	207	270	6.02e-13	68.6
MsaG003383	AT4G28815.2	43.860	57	32	0	123	179	71	127	9.24e-13	66.6
MsaG003383	AT2G46970.2	39.189	74	41	1	122	195	194	263	2.17e-12	67.0
MsaG003383	AT2G46970.1	39.189	74	41	1	122	195	225	294	2.23e-12	67.0
MsaG003383	AT2G46970.3	39.189	74	41	1	122	195	203	272	2.31e-12	67.0
MsaG003383	AT4G28815.1	43.860	57	32	0	123	179	147	203	2.35e-12	66.6
MsaG003383	AT2G43140.1	36.220	127	66	4	59	182	83	197	2.55e-12	65.1
MsaG003383	AT2G43140.2	53.846	65	29	1	119	182	230	294	2.77e-12	66.2
MsaG003383	AT5G01305.1	47.541	61	32	0	119	179	36	96	3.63e-12	63.9
MsaG003383	AT4G28800.1	36.000	75	44	1	123	197	252	322	4.56e-12	66.2
MsaG003383	AT2G43010.1	53.333	60	28	0	123	182	254	313	4.91e-12	66.2
MsaG003383	AT2G43010.2	53.333	60	28	0	123	182	254	313	4.93e-12	66.2
MsaG003383	AT4G28790.2	43.750	64	36	0	117	180	268	331	5.40e-12	65.9
MsaG003383	AT2G43010.3	53.333	60	28	0	123	182	261	320	5.45e-12	65.9
MsaG003383	AT3G59060.3	49.206	63	32	0	122	184	252	314	6.11e-12	65.9
MsaG003383	AT3G59060.2	49.206	63	32	0	122	184	252	314	6.11e-12	65.9
MsaG003383	AT3G59060.4	49.206	63	32	0	122	184	252	314	6.11e-12	65.9
MsaG003383	AT3G59060.1	49.206	63	32	0	122	184	252	314	6.38e-12	65.9
MsaG003383	AT2G43010.5	53.333	60	28	0	123	182	296	355	6.80e-12	65.9
MsaG003383	AT2G43010.4	53.333	60	28	0	123	182	254	313	7.31e-12	65.5
MsaG003383	AT4G00120.1	43.210	81	44	2	114	192	105	185	1.13e-11	63.2

Find 103 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCGGGAGTGGGAAGCGTTTC+CGG	0.137108	1:-55801390	MsaT003383.1:CDS
CGGGAGTGGGAAGCGTTTCC+GGG	0.277270	1:-55801389	MsaT003383.1:CDS
TCATGCACCGGTTTATCATT+TGG	0.277273	1:-55801467	MsaT003383.1:CDS
CATGCACCGGTTTATCATTT+GGG	0.298977	1:-55801466	MsaT003383.1:CDS
ATTACCTCGACTGACGATAA+TGG	0.304796	1:+55798513	None:intergenic
AAAGAATAGCTGAAAGAATC+AGG	0.318251	1:-55800023	MsaT003383.1:CDS
AGTTTCAGGCTTAACTATAC+TGG	0.328183	1:+55798223	None:intergenic
TATGGAGGAGGAATAGTTTC+AGG	0.332933	1:+55798209	None:intergenic
TTGAAGCCTGATGAAGCTTC+CGG	0.337349	1:-55801409	MsaT003383.1:CDS
CGCACTCTAGGTCGCATTGC+TGG	0.338179	1:+55800230	None:intergenic
TCTCACCTTGGCGCTGGAGG+AGG	0.354681	1:-55801493	MsaT003383.1:CDS
TGGATTATGTCAAATTCTTA+AGG	0.362058	1:-55799195	MsaT003383.1:CDS
TGAAGCCTGATGAAGCTTCC+GGG	0.376117	1:-55801408	MsaT003383.1:CDS
CCTCTTCTTGCCCGCACTCT+AGG	0.378408	1:+55800218	None:intergenic
TTACCTCGACTGACGATAAT+GGG	0.384485	1:+55798514	None:intergenic
CCACTCCCGGAAGCTTCATC+AGG	0.392070	1:+55801403	None:intergenic
AGCTCATGGAAGAAAATGTT+GGG	0.395774	1:-55798337	MsaT003383.1:CDS
GATTTCCTTGAACAAATTCT+CGG	0.419929	1:-55801592	MsaT003383.1:CDS
GCTGCCTCTCACCTTGGCGC+TGG	0.427725	1:-55801499	MsaT003383.1:CDS
CCGTCGGCGGAGGTGAAATT+CGG	0.429325	1:+55801565	None:intergenic
TTTGGGTTTGAGCTTGGACC+AGG	0.429629	1:-55801449	MsaT003383.1:CDS
TTATCATTTGGGTTTGAGCT+TGG	0.431085	1:-55801455	MsaT003383.1:CDS
CAGGAAGAAGGAAGTGAGAG+TGG	0.433710	1:-55798419	MsaT003383.1:CDS
GCCTCTCACCTTGGCGCTGG+AGG	0.436271	1:-55801496	MsaT003383.1:CDS
CTCACCTTGGCGCTGGAGGA+GGG	0.440875	1:-55801492	MsaT003383.1:CDS
GGTCGCATTGCTGGTGGTTG+TGG	0.453211	1:+55800239	None:intergenic
CTCAAACCCAAATGATAAAC+CGG	0.453773	1:+55801460	None:intergenic
GAAGACCGAGAATTTGTTCA+AGG	0.461614	1:+55801587	None:intergenic
TGGGAGAAACCAACCAGCTT+GGG	0.463571	1:-55798399	MsaT003383.1:CDS
GGCGACGCTGCCTCTCACCT+TGG	0.464276	1:-55801505	MsaT003383.1:CDS
GACTGATCGAGCTGCCATGC+TGG	0.479757	1:-55799227	MsaT003383.1:CDS
TTGAGCTTGGACCAGGGTAA+AGG	0.479838	1:-55801442	MsaT003383.1:CDS
TGGAGGAGGGTTTCATGCAC+CGG	0.480121	1:-55801479	MsaT003383.1:CDS
CCGGAAACGCTTCCCACTCC+CGG	0.481302	1:+55801390	None:intergenic
AAGGTGAGAGGCAGCGTCGC+CGG	0.485809	1:+55801507	None:intergenic
TCCCCACAGCATCGCTGAAA+GGG	0.487553	1:-55800183	MsaT003383.1:intron
ATTCTTAAGGCTTCAAGTGA+AGG	0.492189	1:-55799182	MsaT003383.1:intron
ATTGCAGATGCCAGTGAGAT+GGG	0.492955	1:+55798272	None:intergenic
TTGGACCAGGGTAAAGGAGG+AGG	0.494681	1:-55801436	MsaT003383.1:CDS
CCTGATGAAGCTTCCGGGAG+TGG	0.498744	1:-55801403	MsaT003383.1:CDS
AGCGTCGGTTCCGTCGGCGG+AGG	0.501900	1:+55801555	None:intergenic
CCGAATTTCACCTCCGCCGA+CGG	0.502344	1:-55801565	MsaT003383.1:CDS
AGCCGGTGCAGTGGCTCCAC+TGG	0.503330	1:-55798547	MsaT003383.1:CDS
ATGAGTAGATTGGGTGGAGC+CGG	0.504884	1:-55798564	MsaT003383.1:CDS
GAAATCGTCGGCGGGTGTAT+CGG	0.505672	1:+55801609	None:intergenic
GGAGCAGCAGGAACTGTAGT+AGG	0.506388	1:+55800260	None:intergenic
TCACCCTTTCAGCGATGCTG+TGG	0.507317	1:+55800180	None:intergenic
CGGAGAAGCGTCGGTTCCGT+CGG	0.507774	1:+55801549	None:intergenic
GCTGGTGGTTGTGGAGCAGC+AGG	0.508567	1:+55800248	None:intergenic
AAGCTCATGGAAGAAAATGT+TGG	0.509498	1:-55798338	MsaT003383.1:CDS
GTGGGAGAAACCAACCAGCT+TGG	0.509556	1:-55798400	MsaT003383.1:CDS
ACCACTTCTCCCAAGCTGGT+TGG	0.515047	1:+55798390	None:intergenic
AGCAGGAACTGTAGTAGGCA+TGG	0.515934	1:+55800265	None:intergenic
TATTGCAGATGCCAGTGAGA+TGG	0.526193	1:+55798271	None:intergenic
CACCCTTTCAGCGATGCTGT+GGG	0.526622	1:+55800181	None:intergenic
AGTTGTCCGACGGTTGCGAT+TGG	0.526806	1:+55798246	None:intergenic
ACCAACCAGCTTGGGAGAAG+TGG	0.527139	1:-55798391	MsaT003383.1:CDS
GAGTTAAGCTGCAGCATCAT+CGG	0.527777	1:+55801529	None:intergenic
TCCTCCAGCGCCAAGGTGAG+AGG	0.528910	1:+55801495	None:intergenic
ATCCCCACAGCATCGCTGAA+AGG	0.531960	1:-55800184	MsaT003383.1:CDS
TTAGACCACTTCTCCCAAGC+TGG	0.534418	1:+55798386	None:intergenic
CTGCATAATGCCCATCTCAC+TGG	0.536918	1:-55798282	MsaT003383.1:CDS
CTGATGAAGCTTCCGGGAGT+GGG	0.540261	1:-55801402	MsaT003383.1:CDS
AGGAAGAAGGAAGTGAGAGT+GGG	0.541139	1:-55798418	MsaT003383.1:CDS
GATGCAGTTTCTTCAATCAA+AGG	0.543892	1:-55798309	MsaT003383.1:CDS
CGAAGGCATGTCTATGGAGG+AGG	0.550678	1:+55798197	None:intergenic
AGCAATGCGACCTAGAGTGC+GGG	0.553479	1:-55800228	MsaT003383.1:CDS
TACCAGTGGAGCCACTGCAC+CGG	0.556175	1:+55798545	None:intergenic
AGTGCGGGCAAGAAGAGGAC+AGG	0.556988	1:-55800213	MsaT003383.1:CDS
AGAAGCGTCGGTTCCGTCGG+CGG	0.557440	1:+55801552	None:intergenic
AAAGCAAGTAGCTAAGCTCA+TGG	0.563532	1:-55798351	MsaT003383.1:CDS
TGGGAGAAGTGGTCTAATGA+TGG	0.569736	1:-55798380	MsaT003383.1:CDS
ATTGGGTGGAGCCGGTGCAG+TGG	0.571354	1:-55798556	MsaT003383.1:CDS
TGGACCAGGGTAAAGGAGGA+GGG	0.575554	1:-55801435	MsaT003383.1:CDS
AGCTTGGACCAGGGTAAAGG+AGG	0.576625	1:-55801439	MsaT003383.1:CDS
CCTAGAGTGCGGGCAAGAAG+AGG	0.582770	1:-55800218	MsaT003383.1:CDS
GCAGGAACTGTAGTAGGCAT+GGG	0.583605	1:+55800266	None:intergenic
TGTTCAAGGAAATCGTCGGC+GGG	0.587670	1:+55801601	None:intergenic
GAAACCCTCCTCCAGCGCCA+AGG	0.593872	1:+55801488	None:intergenic
ACTCTAGGTCGCATTGCTGG+TGG	0.603281	1:+55800233	None:intergenic
TTGAGCATGAGTAGATTGGG+TGG	0.604660	1:-55798570	MsaT003383.1:CDS
CAGCATCATCGGAGAAGCGT+CGG	0.604818	1:+55801540	None:intergenic
AAAACCCTCCTCCTTTACCC+TGG	0.605221	1:+55801431	None:intergenic
TTGTATCAACAAGATCCTCC+CGG	0.608383	1:+55801371	None:intergenic
AAGAATAGCTGAAAGAATCA+GGG	0.613018	1:-55800022	MsaT003383.1:CDS
TCGTCGGCGGGTGTATCGGA+AGG	0.615492	1:+55801613	None:intergenic
TTGGGTTTGAGCTTGGACCA+GGG	0.616126	1:-55801448	MsaT003383.1:CDS
TGCCATGCTGGATGAAATTG+TGG	0.617577	1:-55799215	MsaT003383.1:CDS
CAGCAATGCGACCTAGAGTG+CGG	0.622938	1:-55800229	MsaT003383.1:CDS
ATCCACAATTTCATCCAGCA+TGG	0.624370	1:+55799213	None:intergenic
ACCCTTTCAGCGATGCTGTG+GGG	0.628979	1:+55800182	None:intergenic
TGTCGAAGGCATGTCTATGG+AGG	0.632032	1:+55798194	None:intergenic
TTGTTCAAGGAAATCGTCGG+CGG	0.636210	1:+55801600	None:intergenic
ATGATGCTGCAGCTTAACTC+CGG	0.636220	1:-55801526	MsaT003383.1:CDS
ACTATACTGGAGTTGTCCGA+CGG	0.639351	1:+55798236	None:intergenic
TCATGTACCTTGTTGACACT+AGG	0.645489	1:+55799982	None:intergenic
GAGTGGGAAGCGTTTCCGGG+AGG	0.662373	1:-55801386	MsaT003383.1:CDS
AATATACCAATCGCAACCGT+CGG	0.663547	1:-55798252	MsaT003383.1:CDS
AATGGGATGTCAGTTACCAG+TGG	0.664418	1:+55798531	None:intergenic
ACTTGTTCCTAGTGTCAACA+AGG	0.667852	1:-55799989	MsaT003383.1:intron
CATCCCATTATCGTCAGTCG+AGG	0.668468	1:-55798517	MsaT003383.1:intron
GCTCATGGAAGAAAATGTTG+GGG	0.678396	1:-55798336	MsaT003383.1:CDS
AATTTGTTCAAGGAAATCGT+CGG	0.683744	1:+55801597	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	55798208	55801647	55798208	ID=MsaG003383
Chr1	mRNA	55798208	55801647	55798208	ID=MsaT003383.1;Parent=MsaG003383
Chr1	exon	55798208	55798438	55798208	ID=MsaT003383.1.exon6;Parent=MsaT003383.1
Chr1	CDS	55798208	55798438	55798208	ID=cds.MsaT003383.1;Parent=MsaT003383.1
Chr1	exon	55798518	55798595	55798518	ID=MsaT003383.1.exon5;Parent=MsaT003383.1
Chr1	CDS	55798518	55798595	55798518	ID=cds.MsaT003383.1;Parent=MsaT003383.1
Chr1	exon	55799183	55799248	55799183	ID=MsaT003383.1.exon4;Parent=MsaT003383.1
Chr1	CDS	55799183	55799248	55799183	ID=cds.MsaT003383.1;Parent=MsaT003383.1
Chr1	exon	55799990	55800055	55799990	ID=MsaT003383.1.exon3;Parent=MsaT003383.1
Chr1	CDS	55799990	55800055	55799990	ID=cds.MsaT003383.1;Parent=MsaT003383.1
Chr1	exon	55800184	55800303	55800184	ID=MsaT003383.1.exon2;Parent=MsaT003383.1
Chr1	CDS	55800184	55800303	55800184	ID=cds.MsaT003383.1;Parent=MsaT003383.1
Chr1	exon	55801360	55801647	55801360	ID=MsaT003383.1.exon1;Parent=MsaT003383.1
Chr1	CDS	55801360	55801647	55801360	ID=cds.MsaT003383.1;Parent=MsaT003383.1

Gene Sequence

>MsaT003383.1

ATGGCGAATCATCCTTCCGATACACCCGCCGACGATTTCCTTGAACAAATTCTCGGTCTTCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTCCGATGATGCTGCAGCTTAACTCCGGCGACGCTGCCTCTCACCTTGGCGCTGGAGGAGGGTTTCATGCACCGGTTTATCATTTGGGTTTGAGCTTGGACCAGGGTAAAGGAGGAGGGTTTTTGAAGCCTGATGAAGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATCTTGTTGATACAAGACCTAAAAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTGCTGCTCCACAACCACCAGCAATGCGACCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCCCACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACTGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCTCCACTGGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACCGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCTCTCTGCATAATGCCCATCTCACTGGCATCTGCAATATACCAATCGCAACCGTCGGACAACTCCAGTATAGTTAAGCCTGAAACTATTCCTCCTCCATAG

Protein sequence

>MsaT003383.1

MANHPSDTPADDFLEQILGLPNFTSADGTDASPMMLQLNSGDAASHLGAGGGFHAPVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLVDTRPKNTFHGQPMPTTVPAAPQPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPPP*