Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003405 | XP_024635863.1 | 95.067 | 446 | 15 | 3 | 1 | 439 | 1 | 446 | 0.0 | 871 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003405 | sp|O22759|IDD12_ARATH | 51.128 | 399 | 116 | 11 | 23 | 403 | 36 | 373 | 2.53e-119 | 357 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003405 | tr|A0A396K073|A0A396K073_MEDTR | 95.067 | 446 | 15 | 3 | 1 | 439 | 1 | 446 | 0.0 | 871 |
Gene ID | Type | Classification |
---|---|---|
MsaG003405 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG003289 | MsaG003405 | 0.811847 | 9.792245e-51 | 1.749525e-48 |
MsaG003405 | MsaG006221 | 0.807661 | 7.705487e-50 | 1.243764e-47 |
MsaG003405 | MsaG009007 | 0.826270 | 5.293963e-54 | 1.379321e-51 |
MsaG003405 | MsaG045108 | 0.827879 | 2.190229e-54 | 5.969249e-52 |
MsaG003405 | MsaG046506 | 0.819393 | 2.079180e-52 | 4.500238e-50 |
MsaG003405 | MsaG046554 | 0.840459 | 1.588619e-57 | 6.291399e-55 |
MsaG003405 | MsaG013399 | 0.800683 | 2.148967e-48 | 2.950821e-46 |
MsaG003405 | MsaG031849 | 0.804803 | 3.060883e-49 | 4.619336e-47 |
MsaG003405 | MsaG035918 | 0.801866 | 1.233814e-48 | 1.740149e-46 |
MsaG003405 | MsaG047040 | 0.806132 | 1.616538e-49 | 2.516500e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003405 | MtrunA17_Chr1g0185121 | 95.067 | 446 | 15 | 3 | 1 | 439 | 1 | 446 | 0.0 | 871 |
MsaG003405 | MtrunA17_Chr8g0342421 | 56.374 | 353 | 103 | 8 | 6 | 326 | 18 | 351 | 2.22e-117 | 353 |
MsaG003405 | MtrunA17_Chr2g0330171 | 53.543 | 381 | 134 | 10 | 6 | 362 | 1 | 362 | 2.79e-117 | 351 |
MsaG003405 | MtrunA17_Chr1g0191991 | 60.328 | 305 | 88 | 4 | 40 | 327 | 63 | 351 | 2.26e-116 | 350 |
MsaG003405 | MtrunA17_Chr1g0162971 | 49.742 | 388 | 126 | 8 | 40 | 378 | 41 | 408 | 9.06e-112 | 336 |
MsaG003405 | MtrunA17_Chr7g0263941 | 58.228 | 316 | 102 | 7 | 17 | 326 | 11 | 302 | 1.23e-111 | 334 |
MsaG003405 | MtrunA17_Chr1g0181381 | 82.967 | 182 | 26 | 2 | 36 | 216 | 34 | 211 | 4.80e-111 | 336 |
MsaG003405 | MtrunA17_Chr4g0040571 | 83.051 | 177 | 30 | 0 | 29 | 205 | 28 | 204 | 1.19e-110 | 335 |
MsaG003405 | MtrunA17_Chr8g0373541 | 75.743 | 202 | 43 | 2 | 6 | 207 | 4 | 199 | 1.70e-110 | 335 |
MsaG003405 | MtrunA17_Chr1g0151351 | 56.522 | 299 | 94 | 7 | 35 | 332 | 37 | 300 | 4.92e-110 | 332 |
MsaG003405 | MtrunA17_Chr1g0199101 | 65.000 | 260 | 70 | 7 | 40 | 294 | 47 | 290 | 7.46e-107 | 326 |
MsaG003405 | MtrunA17_Chr4g0029521 | 55.449 | 312 | 118 | 8 | 36 | 326 | 34 | 345 | 1.66e-106 | 324 |
MsaG003405 | MtrunA17_Chr1g0163001 | 69.333 | 225 | 56 | 3 | 4 | 223 | 2 | 218 | 3.67e-105 | 322 |
MsaG003405 | MtrunA17_Chr1g0210821 | 59.766 | 256 | 87 | 4 | 43 | 282 | 47 | 302 | 6.64e-104 | 320 |
MsaG003405 | MtrunA17_Chr2g0326381 | 75.410 | 183 | 44 | 1 | 40 | 221 | 32 | 214 | 3.03e-103 | 313 |
MsaG003405 | MtrunA17_Chr3g0141431 | 48.267 | 404 | 161 | 13 | 33 | 400 | 15 | 406 | 6.58e-103 | 312 |
MsaG003405 | MtrunA17_Chr7g0268961 | 56.393 | 305 | 87 | 5 | 50 | 327 | 32 | 317 | 1.82e-102 | 313 |
MsaG003405 | MtrunA17_Chr2g0324991 | 85.496 | 131 | 19 | 0 | 51 | 181 | 3 | 133 | 2.27e-84 | 255 |
MsaG003405 | MtrunA17_Chr8g0375521 | 49.798 | 247 | 110 | 6 | 40 | 278 | 27 | 267 | 4.41e-74 | 238 |
MsaG003405 | MtrunA17_Chr6g0479921 | 64.103 | 156 | 55 | 1 | 40 | 194 | 29 | 184 | 2.89e-72 | 235 |
MsaG003405 | MtrunA17_Chr2g0320341 | 37.419 | 155 | 83 | 4 | 49 | 189 | 224 | 378 | 5.20e-25 | 106 |
MsaG003405 | MtrunA17_Chr3g0123941 | 36.538 | 156 | 91 | 3 | 45 | 192 | 113 | 268 | 1.64e-23 | 100 |
MsaG003405 | MtrunA17_Chr1g0200421 | 35.099 | 151 | 86 | 3 | 54 | 192 | 236 | 386 | 2.25e-23 | 102 |
MsaG003405 | MtrunA17_Chr5g0422571 | 32.212 | 208 | 127 | 6 | 14 | 210 | 60 | 264 | 5.94e-22 | 95.5 |
MsaG003405 | MtrunA17_Chr8g0382121 | 36.486 | 148 | 83 | 5 | 53 | 189 | 109 | 256 | 1.63e-20 | 91.7 |
MsaG003405 | MtrunA17_Chr7g0258011 | 34.395 | 157 | 85 | 5 | 61 | 200 | 181 | 336 | 6.36e-20 | 90.5 |
MsaG003405 | MtrunA17_Chr4g0053341 | 30.500 | 200 | 125 | 6 | 2 | 192 | 24 | 218 | 1.46e-19 | 87.4 |
MsaG003405 | MtrunA17_Chr8g0352011 | 36.170 | 141 | 80 | 4 | 61 | 192 | 171 | 310 | 1.83e-19 | 89.4 |
MsaG003405 | MtrunA17_Chr1g0198651 | 35.172 | 145 | 79 | 5 | 61 | 192 | 107 | 249 | 2.95e-19 | 87.8 |
MsaG003405 | MtrunA17_Chr1g0173841 | 35.461 | 141 | 81 | 4 | 61 | 192 | 220 | 359 | 1.01e-18 | 87.8 |
MsaG003405 | MtrunA17_Chr2g0328921 | 33.143 | 175 | 98 | 6 | 27 | 192 | 118 | 282 | 2.35e-18 | 85.5 |
MsaG003405 | MtrunA17_Chr4g0026521 | 34.247 | 146 | 86 | 4 | 56 | 192 | 118 | 262 | 3.10e-18 | 84.7 |
MsaG003405 | MtrunA17_Chr2g0321291 | 34.932 | 146 | 85 | 4 | 56 | 192 | 133 | 277 | 9.09e-18 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003405 | AT4G02670.1 | 51.128 | 399 | 116 | 11 | 23 | 403 | 36 | 373 | 2.57e-120 | 357 |
MsaG003405 | AT4G02670.2 | 51.128 | 399 | 116 | 11 | 23 | 403 | 38 | 375 | 3.41e-120 | 356 |
MsaG003405 | AT3G50700.1 | 50.238 | 420 | 167 | 9 | 2 | 385 | 1 | 414 | 4.88e-115 | 345 |
MsaG003405 | AT5G66730.1 | 49.370 | 397 | 126 | 7 | 2 | 331 | 1 | 389 | 3.00e-109 | 332 |
MsaG003405 | AT1G55110.3 | 73.059 | 219 | 50 | 5 | 6 | 215 | 21 | 239 | 1.75e-108 | 328 |
MsaG003405 | AT1G55110.1 | 73.059 | 219 | 50 | 5 | 6 | 215 | 21 | 239 | 1.75e-108 | 328 |
MsaG003405 | AT1G55110.2 | 73.059 | 219 | 50 | 5 | 6 | 215 | 21 | 239 | 1.75e-108 | 328 |
MsaG003405 | AT1G03840.1 | 83.237 | 173 | 29 | 0 | 33 | 205 | 34 | 206 | 6.53e-108 | 328 |
MsaG003405 | AT5G44160.1 | 54.867 | 339 | 111 | 11 | 19 | 324 | 20 | 349 | 1.09e-105 | 321 |
MsaG003405 | AT5G03150.1 | 81.319 | 182 | 30 | 2 | 39 | 216 | 52 | 233 | 1.47e-105 | 322 |
MsaG003405 | AT3G45260.2 | 84.337 | 166 | 25 | 1 | 39 | 203 | 38 | 203 | 3.16e-105 | 319 |
MsaG003405 | AT3G45260.1 | 84.337 | 166 | 25 | 1 | 39 | 203 | 38 | 203 | 3.16e-105 | 319 |
MsaG003405 | AT1G14580.1 | 79.885 | 174 | 30 | 1 | 34 | 202 | 42 | 215 | 5.13e-105 | 320 |
MsaG003405 | AT1G14580.2 | 79.885 | 174 | 30 | 1 | 34 | 202 | 42 | 215 | 5.13e-105 | 320 |
MsaG003405 | AT1G14580.3 | 79.885 | 174 | 30 | 1 | 34 | 202 | 56 | 229 | 7.88e-105 | 320 |
MsaG003405 | AT2G02080.1 | 78.613 | 173 | 33 | 1 | 34 | 202 | 44 | 216 | 4.23e-104 | 319 |
MsaG003405 | AT2G02080.4 | 78.613 | 173 | 33 | 1 | 34 | 202 | 44 | 216 | 4.23e-104 | 319 |
MsaG003405 | AT2G02080.5 | 78.613 | 173 | 33 | 1 | 34 | 202 | 44 | 216 | 4.23e-104 | 319 |
MsaG003405 | AT2G02080.3 | 78.613 | 173 | 33 | 1 | 34 | 202 | 44 | 216 | 4.23e-104 | 319 |
MsaG003405 | AT1G03840.2 | 82.081 | 173 | 29 | 1 | 33 | 205 | 34 | 204 | 5.24e-104 | 318 |
MsaG003405 | AT3G13810.6 | 85.030 | 167 | 24 | 1 | 37 | 202 | 48 | 214 | 1.81e-103 | 317 |
MsaG003405 | AT3G13810.5 | 85.030 | 167 | 24 | 1 | 37 | 202 | 62 | 228 | 2.49e-103 | 317 |
MsaG003405 | AT3G13810.4 | 85.030 | 167 | 24 | 1 | 37 | 202 | 67 | 233 | 2.50e-103 | 317 |
MsaG003405 | AT3G13810.1 | 85.030 | 167 | 24 | 1 | 37 | 202 | 67 | 233 | 2.50e-103 | 317 |
MsaG003405 | AT2G02070.2 | 84.663 | 163 | 25 | 0 | 40 | 202 | 52 | 214 | 5.33e-103 | 319 |
MsaG003405 | AT2G02070.1 | 84.663 | 163 | 25 | 0 | 40 | 202 | 52 | 214 | 5.33e-103 | 319 |
MsaG003405 | AT5G60470.2 | 73.958 | 192 | 40 | 3 | 40 | 221 | 44 | 235 | 4.55e-102 | 312 |
MsaG003405 | AT5G60470.3 | 73.958 | 192 | 40 | 3 | 40 | 221 | 40 | 231 | 4.91e-102 | 311 |
MsaG003405 | AT5G44160.2 | 54.870 | 308 | 101 | 10 | 50 | 324 | 8 | 310 | 7.82e-97 | 297 |
MsaG003405 | AT3G13810.3 | 86.928 | 153 | 19 | 1 | 51 | 202 | 68 | 220 | 4.51e-96 | 298 |
MsaG003405 | AT3G13810.2 | 86.928 | 153 | 19 | 1 | 51 | 202 | 82 | 234 | 5.81e-96 | 298 |
MsaG003405 | AT5G60470.1 | 72.928 | 181 | 39 | 3 | 51 | 221 | 46 | 226 | 2.56e-94 | 291 |
MsaG003405 | AT2G02080.6 | 81.295 | 139 | 26 | 0 | 64 | 202 | 1 | 139 | 4.08e-88 | 275 |
MsaG003405 | AT2G02080.2 | 81.295 | 139 | 26 | 0 | 64 | 202 | 1 | 139 | 4.08e-88 | 275 |
MsaG003405 | AT2G01940.1 | 64.327 | 171 | 55 | 3 | 27 | 195 | 35 | 201 | 1.53e-75 | 243 |
MsaG003405 | AT1G68130.1 | 65.385 | 156 | 52 | 2 | 40 | 193 | 41 | 196 | 6.86e-73 | 235 |
MsaG003405 | AT1G25250.3 | 64.331 | 157 | 53 | 2 | 40 | 193 | 33 | 189 | 2.45e-72 | 233 |
MsaG003405 | AT2G01940.3 | 63.372 | 172 | 56 | 4 | 27 | 195 | 35 | 202 | 5.94e-72 | 234 |
MsaG003405 | AT1G25250.1 | 65.306 | 147 | 48 | 2 | 50 | 193 | 20 | 166 | 5.46e-69 | 223 |
MsaG003405 | AT2G01940.2 | 65.179 | 112 | 37 | 2 | 86 | 195 | 1 | 112 | 3.18e-46 | 163 |
MsaG003405 | AT1G68130.2 | 63.636 | 110 | 38 | 2 | 86 | 193 | 1 | 110 | 2.68e-45 | 160 |
MsaG003405 | AT1G25250.2 | 61.261 | 111 | 40 | 2 | 86 | 193 | 1 | 111 | 5.60e-44 | 156 |
MsaG003405 | AT5G22890.1 | 34.911 | 169 | 94 | 4 | 38 | 192 | 188 | 354 | 3.77e-24 | 103 |
MsaG003405 | AT1G34370.3 | 35.443 | 158 | 88 | 4 | 49 | 192 | 14 | 171 | 2.93e-23 | 99.8 |
MsaG003405 | AT1G34370.2 | 35.443 | 158 | 88 | 4 | 49 | 192 | 224 | 381 | 6.41e-23 | 101 |
MsaG003405 | AT1G34370.1 | 35.443 | 158 | 88 | 4 | 49 | 192 | 224 | 381 | 6.41e-23 | 101 |
MsaG003405 | AT1G34790.1 | 36.000 | 150 | 84 | 5 | 53 | 192 | 129 | 276 | 5.46e-19 | 87.4 |
MsaG003405 | AT1G13290.1 | 34.641 | 153 | 86 | 6 | 61 | 201 | 93 | 243 | 6.39e-19 | 87.4 |
MsaG003405 | AT3G20880.1 | 34.752 | 141 | 82 | 4 | 61 | 192 | 248 | 387 | 2.95e-18 | 87.0 |
MsaG003405 | AT1G51220.1 | 33.562 | 146 | 87 | 4 | 56 | 192 | 165 | 309 | 3.55e-18 | 85.9 |
MsaG003405 | AT3G57670.1 | 34.247 | 146 | 86 | 4 | 56 | 192 | 204 | 348 | 4.82e-18 | 85.9 |
MsaG003405 | AT1G08290.1 | 34.682 | 173 | 91 | 8 | 40 | 192 | 142 | 312 | 7.24e-18 | 84.7 |
Find 119 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCGACGGTTGCTGCTTTC+TGG | 0.054131 | 1:+56199288 | None:intergenic |
GAGAGGTTGGTGTGAAAATT+TGG | 0.168178 | 1:+56199443 | None:intergenic |
GATGATGTCATTATGCTCTT+AGG | 0.239488 | 1:+56199386 | None:intergenic |
TGATGTGGCTTTGTTGGTTT+TGG | 0.242334 | 1:+56199543 | None:intergenic |
AGGCTGTTGTGAGGAATTTA+TGG | 0.247540 | 1:+56202614 | None:intergenic |
GTGTGAAAATTTGGAGATTC+AGG | 0.253132 | 1:+56199452 | None:intergenic |
TGGAAACTTTGTTGTTGATT+TGG | 0.272173 | 1:+56199563 | None:intergenic |
AGGAAGAGAGATTGGACTAA+TGG | 0.292623 | 1:+56199590 | None:intergenic |
GGAAACTTTGTTGTTGATTT+GGG | 0.314994 | 1:+56199564 | None:intergenic |
TTGTGGTGGTGATGGCTAAT+TGG | 0.316995 | 1:+56199621 | None:intergenic |
TTCTGAGAAAGAAGTGGAAT+TGG | 0.320642 | 1:+56202680 | None:intergenic |
CCCAGGTGATGTGGCTTTGT+TGG | 0.325238 | 1:+56199537 | None:intergenic |
TTGGGAAGAGGAAGAGAGAT+TGG | 0.331874 | 1:+56199582 | None:intergenic |
CAGCTCAGCATTGACCAGTT+TGG | 0.334289 | 1:-56199230 | MsaT003405.1:CDS |
GAGACCGTCTTCGTTCTTTC+CGG | 0.338812 | 1:+56199148 | None:intergenic |
GACTAATGGGTTTGTGTTTG+TGG | 0.349306 | 1:+56199604 | None:intergenic |
CAGTCACAACAAGCAGGTTT+TGG | 0.351112 | 1:-56198987 | MsaT003405.1:CDS |
TGTGGTGGAGAGTATTATTA+AGG | 0.363128 | 1:+56199483 | None:intergenic |
AGGGCTCTTGGAGATCTTAC+AGG | 0.369272 | 1:-56202012 | MsaT003405.1:CDS |
CTAGGGTTAGGGTTTGGTTG+AGG | 0.381467 | 1:+56199509 | None:intergenic |
GGAAGAGAGATTGGACTAAT+GGG | 0.383729 | 1:+56199591 | None:intergenic |
ATGATGTCATTATGCTCTTA+GGG | 0.385655 | 1:+56199387 | None:intergenic |
TTATTAAGGTTGCTAGGGTT+AGG | 0.389295 | 1:+56199497 | None:intergenic |
CTTACCAACGGCGGAGGAAA+TGG | 0.400342 | 1:-56199107 | MsaT003405.1:CDS |
TCTATGCTGTTCATTCTGAT+TGG | 0.408547 | 1:-56201924 | MsaT003405.1:CDS |
TATTAGTTACCTGGGTTACC+AGG | 0.411020 | 1:+56202564 | None:intergenic |
TTTGATGAGGTTGGTGTTGG+TGG | 0.413230 | 1:+56199030 | None:intergenic |
ACCAACAAAGCCACATCACC+TGG | 0.418644 | 1:-56199538 | MsaT003405.1:CDS |
GGGTTAGGGTTTGGTTGAGG+TGG | 0.424046 | 1:+56199512 | None:intergenic |
TATTAAGGTTGCTAGGGTTA+GGG | 0.426783 | 1:+56199498 | None:intergenic |
CATAACCCTTCAAGGGCTCT+TGG | 0.427551 | 1:-56202024 | MsaT003405.1:CDS |
CATTTCCTCCGCCGTTGGTA+AGG | 0.428942 | 1:+56199108 | None:intergenic |
GGTTAGGGTTTGGTTGAGGT+GGG | 0.430124 | 1:+56199513 | None:intergenic |
AAAGCTATCACTTCAGCATC+AGG | 0.433390 | 1:+56202231 | None:intergenic |
GGTCTCACGAGGGACTTTCT+TGG | 0.435384 | 1:-56199131 | MsaT003405.1:CDS |
TAGAGGAGGAGAAGAGAGGT+TGG | 0.446268 | 1:+56199430 | None:intergenic |
TTCCTTTGCTTCAACTTCCA+TGG | 0.449693 | 1:+56202102 | None:intergenic |
AGAGTATTATTAAGGTTGCT+AGG | 0.450934 | 1:+56199491 | None:intergenic |
TTTGTTGTTGATTTGGGAAG+AGG | 0.451023 | 1:+56199570 | None:intergenic |
GTTTGGTTGAGGTGGGTCCC+AGG | 0.454878 | 1:+56199520 | None:intergenic |
GTTTGTGTTTGTGGTGGTGA+TGG | 0.463157 | 1:+56199613 | None:intergenic |
AGGTTGCTAGGGTTAGGGTT+TGG | 0.463790 | 1:+56199503 | None:intergenic |
GGGTTTGTGTGACGAAGAAA+TGG | 0.465238 | 1:+56199407 | None:intergenic |
GTGTTCATCATAACCCTTCA+AGG | 0.465914 | 1:-56202032 | MsaT003405.1:CDS |
TTTGCTTCAACTTCCATGGT+AGG | 0.474534 | 1:+56202106 | None:intergenic |
GCTGAGTCACTGATCCAAAC+TGG | 0.482248 | 1:+56199216 | None:intergenic |
AAGGATATGCTAACATTCAC+AGG | 0.488242 | 1:-56199065 | MsaT003405.1:CDS |
GAGATTCAGGCTTGATGTTG+TGG | 0.492741 | 1:+56199465 | None:intergenic |
AGGAAATGGTGGTGAGTCCT+TGG | 0.504475 | 1:-56199093 | MsaT003405.1:CDS |
TTTATATTCTCTAGTACCAC+AGG | 0.507908 | 1:+56201885 | None:intergenic |
GAGTATTATTAAGGTTGCTA+GGG | 0.512977 | 1:+56199492 | None:intergenic |
TGTTTCTTCTGAGAAAGAAG+TGG | 0.516927 | 1:+56202674 | None:intergenic |
GTGGAATTGGACATTAGTGC+AGG | 0.522525 | 1:+56202693 | None:intergenic |
GTGATGTTGGCTGCCTGTGA+TGG | 0.522742 | 1:+56199259 | None:intergenic |
AACATGAGAGGCTGCCTCAC+CGG | 0.528047 | 1:-56199167 | MsaT003405.1:CDS |
GTGTGTGAGATCTGCAACAA+GGG | 0.528425 | 1:-56202174 | MsaT003405.1:CDS |
TGATGAACACATGAAGGCTC+TGG | 0.528458 | 1:+56202045 | None:intergenic |
GAGGTGGGTCCCAGGTGATG+TGG | 0.529471 | 1:+56199528 | None:intergenic |
GTCGGTGCCACCGCCATCAC+AGG | 0.531410 | 1:-56199272 | MsaT003405.1:CDS |
CTTGGCCTTACCAACGGCGG+AGG | 0.533245 | 1:-56199113 | MsaT003405.1:CDS |
AACAACTGTTCCTGAGTCGT+GGG | 0.538679 | 1:-56198952 | MsaT003405.1:CDS |
AATTTATGGTTGAAACTAAG+TGG | 0.539157 | 1:+56202628 | None:intergenic |
ACCACCATTTCCTCCGCCGT+TGG | 0.540479 | 1:+56199103 | None:intergenic |
GTCCTCTCCTATGTAGCTGT+AGG | 0.540553 | 1:+56202133 | None:intergenic |
ATGGTAGAGGAGGAGAAGAG+AGG | 0.543866 | 1:+56199426 | None:intergenic |
TGACGAAGAAATGGTAGAGG+AGG | 0.549887 | 1:+56199416 | None:intergenic |
GACTTTCTTGGCCTTACCAA+CGG | 0.550956 | 1:-56199119 | MsaT003405.1:CDS |
CAACAACTGTTCCTGAGTCG+TGG | 0.554359 | 1:-56198953 | MsaT003405.1:CDS |
AGATCTCCAAGAGCCCTTGA+AGG | 0.557730 | 1:+56202018 | None:intergenic |
ATCAAAACCTACAGCTACAT+AGG | 0.557971 | 1:-56202140 | MsaT003405.1:CDS |
TGAGCTGAGAGGTGTGATGT+TGG | 0.562319 | 1:+56199246 | None:intergenic |
TGCTGTGTGCTGACGTGGAA+GGG | 0.562720 | 1:+56199362 | None:intergenic |
TTGGCTGCCTGTGATGGCGG+TGG | 0.566128 | 1:+56199265 | None:intergenic |
TAATGGGTTTGTGTTTGTGG+TGG | 0.568535 | 1:+56199607 | None:intergenic |
TAGCATATCCTTTACATCCA+AGG | 0.571843 | 1:+56199076 | None:intergenic |
AGAAGCCTCCCTGGTAACCC+AGG | 0.574987 | 1:-56202573 | MsaT003405.1:intron |
AAGGTTGCTGTGTGCTGACG+TGG | 0.575946 | 1:+56199357 | None:intergenic |
TGTGATGGCGGTGGCACCGA+CGG | 0.576064 | 1:+56199274 | None:intergenic |
AGAGAATATAAATGTGATTG+TGG | 0.579986 | 1:-56201874 | MsaT003405.1:CDS |
TACCATGGAAGTTGAAGCAA+AGG | 0.582854 | 1:-56202104 | MsaT003405.1:CDS |
TGCTGAAAGGTGTGGTGACA+TGG | 0.583375 | 1:+56199322 | None:intergenic |
AGAACGAAGACGGTCTCACG+AGG | 0.584329 | 1:-56199142 | MsaT003405.1:CDS |
GTGTGGTGACATGGCAGCAG+TGG | 0.584847 | 1:+56199331 | None:intergenic |
TTGCTGTGTGCTGACGTGGA+AGG | 0.586433 | 1:+56199361 | None:intergenic |
TGGTGAGTCCTTGGATGTAA+AGG | 0.590221 | 1:-56199084 | MsaT003405.1:CDS |
GTTGTTAATGTAGTGATCAA+CGG | 0.595265 | 1:+56199187 | None:intergenic |
GGGTTATGATGAACACATGA+AGG | 0.597360 | 1:+56202039 | None:intergenic |
GATCTCCAAGAGCCCTTGAA+GGG | 0.598968 | 1:+56202019 | None:intergenic |
GTGTGACGAAGAAATGGTAG+AGG | 0.601234 | 1:+56199413 | None:intergenic |
GACATGGCAGCAGTGGAAGA+AGG | 0.611386 | 1:+56199338 | None:intergenic |
AAGTCACAGTCACAACAAGC+AGG | 0.612011 | 1:-56198993 | MsaT003405.1:CDS |
ATTAGTTACCTGGGTTACCA+GGG | 0.616252 | 1:+56202565 | None:intergenic |
GGAGAGGACATAACCTACCA+TGG | 0.621627 | 1:-56202119 | MsaT003405.1:CDS |
CGTCTTCGTTCTTTCCGGTG+AGG | 0.625760 | 1:+56199153 | None:intergenic |
TGTTCATCATAACCCTTCAA+GGG | 0.626799 | 1:-56202031 | MsaT003405.1:CDS |
ATGTTGGCTGCCTGTGATGG+CGG | 0.628490 | 1:+56199262 | None:intergenic |
CTCCAGAAAGCAGCAACCGT+CGG | 0.630036 | 1:-56199290 | MsaT003405.1:CDS |
ATTCAGGCTTGATGTTGTGG+TGG | 0.630169 | 1:+56199468 | None:intergenic |
CACTACATTAACAACATGAG+AGG | 0.631695 | 1:-56199179 | MsaT003405.1:CDS |
ACCAACGGCGGAGGAAATGG+TGG | 0.634537 | 1:-56199104 | MsaT003405.1:CDS |
GGAGAAGTGCAGTTGCTGAA+AGG | 0.641527 | 1:+56199309 | None:intergenic |
AAACATTATAGTAGAAAACA+TGG | 0.647572 | 1:-56201982 | MsaT003405.1:CDS |
AGTTACCTGGGTTACCAGGG+AGG | 0.652361 | 1:+56202568 | None:intergenic |
ACAACTGTTCCTGAGTCGTG+GGG | 0.654552 | 1:-56198951 | MsaT003405.1:CDS |
AGGATATGCTAACATTCACA+GGG | 0.658162 | 1:-56199064 | MsaT003405.1:CDS |
CCAACAAAGCCACATCACCT+GGG | 0.660119 | 1:-56199537 | MsaT003405.1:CDS |
TGGAATTGGACATTAGTGCA+GGG | 0.664460 | 1:+56202694 | None:intergenic |
AACCTACAGCTACATAGGAG+AGG | 0.665795 | 1:-56202135 | MsaT003405.1:CDS |
CTGGTCAATGCTGAGCTGAG+AGG | 0.669761 | 1:+56199235 | None:intergenic |
TGTGTGTGAGATCTGCAACA+AGG | 0.672147 | 1:-56202175 | MsaT003405.1:CDS |
GAACGAAGACGGTCTCACGA+GGG | 0.672722 | 1:-56199141 | MsaT003405.1:CDS |
CTCACCGGAAAGAACGAAGA+CGG | 0.675316 | 1:-56199152 | MsaT003405.1:CDS |
CAACTGTTCCTGAGTCGTGG+GGG | 0.675581 | 1:-56198950 | MsaT003405.1:CDS |
GAAGCAAAGGAACAACAAAG+AGG | 0.688495 | 1:-56202091 | MsaT003405.1:CDS |
TTTCTTGGCCTTACCAACGG+CGG | 0.703626 | 1:-56199116 | MsaT003405.1:CDS |
AAAGCTCACTCTAAAACCTG+TGG | 0.713942 | 1:-56201901 | MsaT003405.1:CDS |
AGTGCAGTTGCTGAAAGGTG+TGG | 0.715797 | 1:+56199314 | None:intergenic |
GATATGCTAACATTCACAGG+GGG | 0.759370 | 1:-56199062 | MsaT003405.1:CDS |
GGATATGCTAACATTCACAG+GGG | 0.776190 | 1:-56199063 | MsaT003405.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 56198941 | 56202721 | 56198941 | ID=MsaG003405 |
Chr1 | mRNA | 56198941 | 56202721 | 56198941 | ID=MsaT003405.1;Parent=MsaG003405 |
Chr1 | exon | 56198941 | 56199715 | 56198941 | ID=MsaT003405.1.exon3;Parent=MsaT003405.1 |
Chr1 | CDS | 56198941 | 56199715 | 56198941 | ID=cds.MsaT003405.1;Parent=MsaT003405.1 |
Chr1 | exon | 56201859 | 56202255 | 56201859 | ID=MsaT003405.1.exon2;Parent=MsaT003405.1 |
Chr1 | CDS | 56201859 | 56202255 | 56201859 | ID=cds.MsaT003405.1;Parent=MsaT003405.1 |
Chr1 | exon | 56202574 | 56202721 | 56202574 | ID=MsaT003405.1.exon1;Parent=MsaT003405.1 |
Chr1 | CDS | 56202574 | 56202721 | 56202574 | ID=cds.MsaT003405.1;Parent=MsaT003405.1 |
Gene Sequence |
Protein sequence |