AlfalfaGEDB | MsaG003407

M. sativa ssp. caerulea / MsaG003407

KEGG: K17505
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00481.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003407	XP_003590579.2	97.199	1071	30	0	1	1071	1	1071	0.0	2184

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003407	sp\|Q8RXY0\|Y3333_ARATH	65.816	392	116	4	678	1069	1	374	1.49e-178	528

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003407	tr\|G7ICS2\|G7ICS2_MEDTR	97.199	1071	30	0	1	1071	1	1071	0.0	2184

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000081	MsaG003407	0.852895	6.565009e-61	3.935066e-58
MsaG001281	MsaG003407	0.800545	2.292080e-48	3.137443e-46
MsaG003407	MsaG005961	0.813600	4.065358e-51	7.587053e-49
MsaG003407	MsaG009864	0.815011	1.989160e-51	3.846363e-49
MsaG003407	MsaG012982	0.807776	7.285998e-50	1.179335e-47
MsaG003407	MsaG017658	0.841727	7.402045e-58	3.051310e-55
MsaG003407	MsaG018239	0.810858	1.601406e-50	2.792569e-48
MsaG003407	MsaG020016	0.832573	1.583918e-55	4.937847e-53
MsaG003407	MsaG020135	0.830416	5.348026e-55	1.566297e-52
MsaG003407	MsaG022557	0.823163	2.834942e-53	6.783632e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003407	MtrunA17_Chr1g0185141	97.199	1071	30	0	1	1071	1	1071	0.0	2184
MsaG003407	MtrunA17_Chr1g0150781	33.478	230	98	7	226	446	368	551	1.72e-23	106
MsaG003407	MtrunA17_Chr3g0135961	32.589	224	96	6	226	440	364	541	2.38e-23	105
MsaG003407	MtrunA17_Chr4g0070871	31.897	232	96	8	225	442	324	507	5.00e-22	101
MsaG003407	MtrunA17_Chr3g0112291	32.301	226	90	6	226	438	200	375	1.70e-21	98.2
MsaG003407	MtrunA17_Chr1g0150451	28.740	254	123	6	183	436	126	321	2.41e-21	96.7
MsaG003407	MtrunA17_Chr5g0396731	32.432	222	97	5	226	440	177	352	3.19e-21	96.7
MsaG003407	MtrunA17_Chr3g0136711	27.953	254	125	6	183	436	83	278	5.67e-21	94.7
MsaG003407	MtrunA17_Chr1g0158781	39.735	151	81	6	300	444	240	386	3.81e-20	94.0
MsaG003407	MtrunA17_Chr2g0299981	25.389	386	195	15	72	440	228	537	4.97e-19	92.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG003407	AT3G63340.7	55.807	1059	407	15	24	1069	30	1040	1155
MsaG003407	AT3G63340.5	55.744	1062	402	17	24	1069	30	1039	1151
MsaG003407	AT3G63340.1	55.744	1062	402	17	24	1069	30	1039	1151
MsaG003407	AT3G63340.2	54.121	1092	407	16	24	1069	30	1073	1137
MsaG003407	AT3G63340.8	54.985	1033	397	17	24	1040	30	1010	1098
MsaG003407	AT3G63340.6	54.873	1026	395	17	24	1033	30	1003	1086
MsaG003407	AT3G63340.3	54.873	1026	395	17	24	1033	30	1003	1086
MsaG003407	AT3G63340.10	54.873	1026	395	17	24	1033	30	1003	1086
MsaG003407	AT3G63340.4	54.873	1026	395	17	24	1033	30	1003	1086
MsaG003407	AT3G63340.11	52.009	871	352	16	24	878	30	850	848

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Find 244 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATGAAGGAAGCCTCT+AGG	0.538727	1:+56259916	MsaT003407.1:intron
AAAGGGCAGTATGGACAATA+TGG	0.370563	1:+56261042	MsaT003407.1:CDS
AACAACAGAAGAAGGGCAAG+AGG	0.596199	1:+56266154	MsaT003407.1:CDS
AACCAACGCCACCACTTTGA+TGG	0.287978	1:-56266128	None:intergenic
AACTGCTAACGATAGCTACT+TGG	0.481960	1:+56260868	MsaT003407.1:CDS
AACTTGGTATCTGGCAGATT+AGG	0.330954	1:-56262322	None:intergenic
AAGAAGCTACACTGAAAACG+AGG	0.698930	1:+56261117	MsaT003407.1:CDS
AAGACTTGAGCAAGTGAAAC+AGG	0.436937	1:+56266091	MsaT003407.1:CDS
AAGATGTCTGTGATTTGTTG+TGG	0.560429	1:+56260930	MsaT003407.1:CDS
AAGCACTTCTTCATCGCGTT+AGG	0.394880	1:+56258391	MsaT003407.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	56258382	56271692	56258382	ID=MsaG003407
Chr1	mRNA	56258382	56271692	56258382	ID=MsaT003407.1;Parent=MsaG003407
Chr1	exon	56258382	56258658	56258382	ID=MsaT003407.1.exon1;Parent=MsaT003407.1
Chr1	CDS	56258382	56258658	56258382	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56258954	56259218	56258954	ID=MsaT003407.1.exon2;Parent=MsaT003407.1
Chr1	CDS	56258954	56259218	56258954	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56259727	56259832	56259727	ID=MsaT003407.1.exon3;Parent=MsaT003407.1
Chr1	CDS	56259727	56259832	56259727	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56259927	56260068	56259927	ID=MsaT003407.1.exon4;Parent=MsaT003407.1
Chr1	CDS	56259927	56260068	56259927	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56260272	56260533	56260272	ID=MsaT003407.1.exon5;Parent=MsaT003407.1
Chr1	CDS	56260272	56260533	56260272	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56260823	56261190	56260823	ID=MsaT003407.1.exon6;Parent=MsaT003407.1
Chr1	CDS	56260823	56261190	56260823	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56262284	56262357	56262284	ID=MsaT003407.1.exon7;Parent=MsaT003407.1
Chr1	CDS	56262284	56262357	56262284	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56262939	56263092	56262939	ID=MsaT003407.1.exon8;Parent=MsaT003407.1
Chr1	CDS	56262939	56263092	56262939	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56263222	56263414	56263222	ID=MsaT003407.1.exon9;Parent=MsaT003407.1
Chr1	CDS	56263222	56263414	56263222	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56263665	56263857	56263665	ID=MsaT003407.1.exon10;Parent=MsaT003407.1
Chr1	CDS	56263665	56263857	56263665	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56265756	56266202	56265756	ID=MsaT003407.1.exon11;Parent=MsaT003407.1
Chr1	CDS	56265756	56266202	56265756	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56267152	56267209	56267152	ID=MsaT003407.1.exon12;Parent=MsaT003407.1
Chr1	CDS	56267152	56267209	56267152	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56267740	56267827	56267740	ID=MsaT003407.1.exon13;Parent=MsaT003407.1
Chr1	CDS	56267740	56267827	56267740	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56269093	56269167	56269093	ID=MsaT003407.1.exon14;Parent=MsaT003407.1
Chr1	CDS	56269093	56269167	56269093	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56269264	56269347	56269264	ID=MsaT003407.1.exon15;Parent=MsaT003407.1
Chr1	CDS	56269264	56269347	56269264	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56269479	56269622	56269479	ID=MsaT003407.1.exon16;Parent=MsaT003407.1
Chr1	CDS	56269479	56269622	56269479	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56269954	56270035	56269954	ID=MsaT003407.1.exon17;Parent=MsaT003407.1
Chr1	CDS	56269954	56270035	56269954	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56271005	56271087	56271005	ID=MsaT003407.1.exon18;Parent=MsaT003407.1
Chr1	CDS	56271005	56271087	56271005	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56271191	56271245	56271191	ID=MsaT003407.1.exon19;Parent=MsaT003407.1
Chr1	CDS	56271191	56271245	56271191	ID=cds.MsaT003407.1;Parent=MsaT003407.1
Chr1	exon	56271627	56271692	56271627	ID=MsaT003407.1.exon20;Parent=MsaT003407.1
Chr1	CDS	56271627	56271692	56271627	ID=cds.MsaT003407.1;Parent=MsaT003407.1

Gene Sequence

>MsaT003407.1

ATGATTAGAAAGCACTTCTTCATCGCGTTAGGGTTTCTCCTCCTCTCCGCAACAATCCCCTTCACTCACGCCGAATCATCCACATGCTTAACCGTTTACAAACACGGTGGCGCTCCGGCGGTGTTCCAATCCCCAAAATGCCCCCGCTGGAACCTCTTCGATCACAATTCTCGTCCTCAATCCACTACTCGTTGCCACTCCGCAATGCTCCAAGGTCGAAGAAAATCTCAAGAGGATCGCACTCTCTGCGTCCTCGATCTTCGCATTCCATTTCCCGGTGCAATGGGGATTAAGGAAGTTGTGGTTGGGATTGTGGCGGTTTTCGATGGTCATAACGGTGCGGAAGCTAGTGAGATGGCGTCAAAATTATTGATGGAGTATTTTGTTCTTCATACTTATTTTCTTCTTGATGCTACGTATTCTGTTATATCGAAAGCTTCGACAGGAACATTGCTTCATGGGAAAGATCATGATCATGTAAACGTATTGCATAGACGGAAAGAGATGTTAGGTTGGCAATTGAATGAACTGCATTCTGAAAGGTTGCAGAATACATTTTCTGCTAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAAGAAGCATTGTTGAGAGCAATTCATGATATTGATGAAAAGTTTTCTGAGGAAGCCTCTAGGAATAACCTTCATTCAGGATCTACAGCAACAGTTGTATTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCCAAGGCTTTCTTGTGCTCTGAAAATTTTCAGTCTCCTAAGGAGGCTAAAGCTTCTTTATTAAAGCTATATAGGCAGACAGAGCGTGATGGTTCTGTTTCTGTGTGGGATCGTGAAAAGTACAGATTAGCTTCTTCCCAAGGGCTCACTAATTTTGCCGTAAAGGAATTGACTAGGGATCATCATCCAGACAGAGAGGATGAAAGAACTCGTGTGGAAGCTGCTGGTGGTCAAGTTCTAAATTGGGGCGGTTTGCCTCGCGTAAATGGTCAGTTGGCTATAACACGGGCTATTGGCGACGTGTTCTTTAAAAGTTATGGAGTTGTATCTGCACCAGAAGTGACTGATTGGCAGCCTCTAACTGCTAACGATAGCTACTTGGTGGCTGCATCTGATGGAGTCTTTGAGAAGTTGAGTGTGCAAGATGTCTGTGATTTGTTGTGGGAAGTACACCGTTTATGTGACATGAGATCAGATTGCACCTCTTCATCTTCTTATTCATTAGCAGATTTTATTATTAATACTGCCTTAAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTTGTTCCTCTGGAATCTTTCAAATCTTCTGCTAACTCGCTTAGAAGAAGCTACACTGAAAACGAGGATGCAGGTTTCCCATTATTTGGTCTGCAGGAATCTGCTTACAGAAGCTCAGCCAATGGTATCACCTCTGATCGATTGCACCTGGAGCACCCTAATCTGCCAGATACCAAGTTTAAGCGAATAATGGTTGAAGTGAAACATGGTGATTTTGGGTGTTTTTATTTATCAGAAAATCTTGGTGATTTGGTGGATTCTAAGTGGCTTGCCAAAAAAGATGACTGGGAAGACTATTTGTATGAACTACCCCAGCCTATACCAGATGCCCTTCATCAACAAGCTGTAGTAGATGGCCCTGTAATTTTGTACAACGACCAAAACTTCTGTTTTCACCTGAGTTCAACTATCAATGAAGCCAATGACCAATGCATAAATCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGAATCAATTCCTTTACATGATACTGGTTCAGATAACAGGTCTTCTGATTATTCAATGCCTGATTCAAGGTATGTATTAAAGAGGAGTTTTGGTCGTGGATCATATGGTGAAGTATGGTTGGCTTTTCATTGGAATTGTAACCAAGGTAATATTACTGCAAAAATGAGCAAGGGTGACAATAATAGAAACAGCAGCTCAAGTAATCCTGAGTGTCAGGATGGTCCTTCTAACTACACCCTGTACATTTTGAAACGTATAATGGTAGAGAAAGGGTCTGCTGTGTACTTAAGTGGGCTGAGGGAAAAACATTTTGGAGAAATTTTCTTAAATGCCTCCATGTGCTTTGAAGATGTGCTGTTGGCTGGAAAATCTAACTGCGTATACGAAACATCACAATATGATTCTGAGTATTCGTTTCAAAACAAATTTCGACTGCAAGGAGCCATATATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAATCTTTTGAGTCCCGGTCCAATGAAATATGGCTTGTATTCAGTTATGAAGGAGTGTCATTGTCAAAACTTTTATATACTGTAGAAGATGCAAACAATACTGCCGAGAACGAAAGACTTGAGCAAGTGAAACAGGTTCGGATACTACGTCCATCAAAGTGGTGGCGTTGGTTGAAAACAACAGAAGAAGGGCAAGAGGAAATGCGCAACCTTATCTGGCAACTGTTATTGGCACTCAAGTCTTGTCACGACCGCAATATCACACACAGGGATATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCCAGAGTCAGGGAGATGCTTGAAAGATGCTCCAACAAAAGTGAATAATTTTTCCACCAAAATGCGTATTATTGACTTTGGAAGTGGAATTGACGAGTTCACAATAAAGCATTTATATGCTTCTACTGGGCCTTCTAGAGCTGAACAAACTTACGAGTACACACCTCCTGAAGCTTTGCTAAATGCTACATGGTATCAAGGGCCATCAAGCTCAACTTTGAAGTATGACATGTGGAGTGTTGGTGTTGTGATGTTAGAGATGGTCTTAGGGACACCAAATATTTTCCAGATAAATGCTTTAACACGTGCTCTTTTGGATCGGCATCTTGAGGGCTGGAATGAGGGTGTGAAGGAGCTGGCATACAAACTTAGATCGTTCATGGAATTGTGCATCTTAATCCCTGGGGTTTCTGGCAGCTACTCAAAAAAGTATCACAAAGTGAATCAAGTTGGAGTTTCGCCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTAGACAAATTAAGGCTAGAGATCCTCTTAAAATAGGTTTTTCAGACATCTGGGCTTTACGGTTAGTGCGCCATCTGCTTATGTGGGACCCGGAGGATCGGCCAAGTGTTGACGAGGCATTGCAGCATCCCTATTTCCAACCTCCACCAAGAAGATAA

Protein sequence

>MsaT003407.1

MIRKHFFIALGFLLLSATIPFTHAESSTCLTVYKHGGAPAVFQSPKCPRWNLFDHNSRPQSTTRCHSAMLQGRRKSQEDRTLCVLDLRIPFPGAMGIKEVVVGIVAVFDGHNGAEASEMASKLLMEYFVLHTYFLLDATYSVISKASTGTLLHGKDHDHVNVLHRRKEMLGWQLNELHSERLQNTFSANFDDSFHLEILKEALLRAIHDIDEKFSEEASRNNLHSGSTATVVLVADDKILVANIGDSKAFLCSENFQSPKEAKASLLKLYRQTERDGSVSVWDREKYRLASSQGLTNFAVKELTRDHHPDREDERTRVEAAGGQVLNWGGLPRVNGQLAITRAIGDVFFKSYGVVSAPEVTDWQPLTANDSYLVAASDGVFEKLSVQDVCDLLWEVHRLCDMRSDCTSSSSYSLADFIINTALKKGSMDNMAAVVVPLESFKSSANSLRRSYTENEDAGFPLFGLQESAYRSSANGITSDRLHLEHPNLPDTKFKRIMVEVKHGDFGCFYLSENLGDLVDSKWLAKKDDWEDYLYELPQPIPDALHQQAVVDGPVILYNDQNFCFHLSSTINEANDQCINPEGFASFIGLLESIPLHDTGSDNRSSDYSMPDSRYVLKRSFGRGSYGEVWLAFHWNCNQGNITAKMSKGDNNRNSSSSNPECQDGPSNYTLYILKRIMVEKGSAVYLSGLREKHFGEIFLNASMCFEDVLLAGKSNCVYETSQYDSEYSFQNKFRLQGAIYEEGLNHIARYVESFESRSNEIWLVFSYEGVSLSKLLYTVEDANNTAENERLEQVKQVRILRPSKWWRWLKTTEEGQEEMRNLIWQLLLALKSCHDRNITHRDIKPENMVICFEDPESGRCLKDAPTKVNNFSTKMRIIDFGSGIDEFTIKHLYASTGPSRAEQTYEYTPPEALLNATWYQGPSSSTLKYDMWSVGVVMLEMVLGTPNIFQINALTRALLDRHLEGWNEGVKELAYKLRSFMELCILIPGVSGSYSKKYHKVNQVGVSPASWKCSEEFFSRQIKARDPLKIGFSDIWALRLVRHLLMWDPEDRPSVDEALQHPYFQPPPRR*