AlfalfaGEDB | MsaG003412

M. sativa ssp. caerulea / MsaG003412

KEGG: K08857
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003412	XP_003590591.1	97.671	601	14	0	1	601	1	601	0.0	1222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003412	sp\|Q2QMH1\|NEK2_ORYSJ	62.063	601	214	7	1	599	1	589	0.0	727

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003412	tr\|G7IDK6\|G7IDK6_MEDTR	97.671	601	14	0	1	601	1	601	0.0	1222

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003412	MtrunA17_Chr1g0185221	97.671	601	14	0	1	601	1	601	0.0	1222
MsaG003412	MtrunA17_Chr7g0260191	70.178	617	159	5	1	598	1	611	0.0	845
MsaG003412	MtrunA17_Chr1g0190831	62.539	638	167	12	1	597	1	607	0.0	754
MsaG003412	MtrunA17_Chr4g0025671	71.374	262	75	0	1	262	5	266	1.01e-143	442
MsaG003412	MtrunA17_Chr7g0258051	68.561	264	83	0	1	264	13	276	1.98e-139	419
MsaG003412	MtrunA17_Chr7g0258051	35.507	138	85	1	463	596	495	632	1.40e-14	77.0
MsaG003412	MtrunA17_Chr2g0321841	67.939	262	84	0	1	262	1	262	1.41e-137	425
MsaG003412	MtrunA17_Chr2g0321841	69.355	62	19	0	540	601	934	995	5.20e-18	88.6
MsaG003412	MtrunA17_Chr1g0173921	60.140	286	103	2	1	275	1	286	5.51e-126	395
MsaG003412	MtrunA17_Chr1g0173921	62.963	54	20	0	543	596	931	984	5.12e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG003412	AT3G63280.2	60.164	610	179	9	1	601	1	555	686
MsaG003412	AT3G63280.3	60.164	610	179	9	1	601	1	555	686
MsaG003412	AT3G63280.1	60.164	610	179	9	1	601	1	555	686
MsaG003412	AT3G63280.4	60.164	610	179	9	1	601	55	609	685
MsaG003412	AT1G54510.4	59.091	616	210	11	1	599	1	591	668
MsaG003412	AT1G54510.2	59.091	616	210	11	1	599	1	591	668
MsaG003412	AT1G54510.1	59.091	616	210	11	1	599	1	591	668
MsaG003412	AT1G54510.3	59.091	616	210	11	1	599	1	591	668
MsaG003412	AT3G04810.2	58.121	628	209	14	1	601	1	601	664
MsaG003412	AT3G04810.1	58.121	628	209	14	1	601	1	601	664

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Find 150 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTATGAACTATCCAT+AGG	0.553047	1:-56301950	MsaT003412.1:CDS
AAACTTGCGCTGATGAGAAT+CGG	0.516005	1:+56301120	None:intergenic
AAAGATCAAGATATACGTCT+AGG	0.561642	1:-56303636	MsaT003412.1:intron
AAAGGACAAGTGTACCATCC+AGG	0.599651	1:-56301218	MsaT003412.1:CDS
AAAGGGAAAGTACTTCTTCT+GGG	0.436520	1:+56302160	None:intergenic
AAAGTACCGGAATACATTGT+TGG	0.531316	1:+56302822	None:intergenic
AACCAAATGGCTGTTTCTCT+TGG	0.351209	1:+56300965	None:intergenic
AACGCGCTGAGGCATTGGAA+GGG	0.602717	1:-56301078	MsaT003412.1:CDS
AAGAGAGGATGATCCTCACC+AGG	0.558386	1:+56301322	None:intergenic
AAGCGCTGCTCTACAACACG+TGG	0.690294	1:-56301170	MsaT003412.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	56300934	56305048	56300934	ID=MsaG003412
Chr1	mRNA	56300934	56305048	56300934	ID=MsaT003412.1;Parent=MsaG003412
Chr1	exon	56300934	56301536	56300934	ID=MsaT003412.1.exon14;Parent=MsaT003412.1
Chr1	CDS	56300934	56301536	56300934	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56301793	56302251	56301793	ID=MsaT003412.1.exon13;Parent=MsaT003412.1
Chr1	CDS	56301793	56302251	56301793	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56302448	56302499	56302448	ID=MsaT003412.1.exon12;Parent=MsaT003412.1
Chr1	CDS	56302448	56302499	56302448	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56302822	56302895	56302822	ID=MsaT003412.1.exon11;Parent=MsaT003412.1
Chr1	CDS	56302822	56302895	56302822	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56303129	56303178	56303129	ID=MsaT003412.1.exon10;Parent=MsaT003412.1
Chr1	CDS	56303129	56303178	56303129	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56303309	56303390	56303309	ID=MsaT003412.1.exon9;Parent=MsaT003412.1
Chr1	CDS	56303309	56303390	56303309	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56303470	56303519	56303470	ID=MsaT003412.1.exon8;Parent=MsaT003412.1
Chr1	CDS	56303470	56303519	56303470	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56303637	56303679	56303637	ID=MsaT003412.1.exon7;Parent=MsaT003412.1
Chr1	CDS	56303637	56303679	56303637	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56303782	56303862	56303782	ID=MsaT003412.1.exon6;Parent=MsaT003412.1
Chr1	CDS	56303782	56303862	56303782	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56303979	56304024	56303979	ID=MsaT003412.1.exon5;Parent=MsaT003412.1
Chr1	CDS	56303979	56304024	56303979	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56304128	56304174	56304128	ID=MsaT003412.1.exon4;Parent=MsaT003412.1
Chr1	CDS	56304128	56304174	56304128	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56304446	56304511	56304446	ID=MsaT003412.1.exon3;Parent=MsaT003412.1
Chr1	CDS	56304446	56304511	56304446	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56304734	56304800	56304734	ID=MsaT003412.1.exon2;Parent=MsaT003412.1
Chr1	CDS	56304734	56304800	56304734	ID=cds.MsaT003412.1;Parent=MsaT003412.1
Chr1	exon	56304963	56305048	56304963	ID=MsaT003412.1.exon1;Parent=MsaT003412.1
Chr1	CDS	56304963	56305048	56304963	ID=cds.MsaT003412.1;Parent=MsaT003412.1

Gene Sequence

>MsaT003412.1

ATGGAGCAGTATGAAGTACTTGAACAAATTGGTAAGGGTTCTTTTGCTTCTGCTTTGCTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTGAAGAAGATCCGTCTTGCCCGGCAGACCGACAGAATCCGTAGATCTGCTCACCAGGAGATGGAACTTATATCTAAAGTTCGTAATCCATTCATTGTAGAGTATAAAGATTCCTGGGTTGAAAAGGGTTGTTTTGTGTGTATTGTCATTGGCTATTGTGAAGGAGGAGATATGGCCGAAGCTATTAAAAAGGCTAATTGTGTTCATTTTTCTGAAGAGAGGCTTTGCAAGTGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTCGGTCTTGCTAAAATGTTGACAAGTGATGATCTTGCTTCTTCGATTGTAGGCACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTCGATATGCAAGCACTAATTAACAAAATAAACAAATCTTTAGTGGCCCCACTACCAACAATGTATTCCGGTACTTTTCGAGGCATGGTGAAGAGCATGCTGCGGAAAAACCCCGAGCTTAGGCCAAGTGCTGCAGAGCTACTAAATCATCCTCATCTTCAACCTTATATACTTAAAGTTCATCTGAAACTAAATAACCCCAGAAGAAGTACTTTCCCTTTCCAATGGACAGACTCAAACCATGCTAGGAGAAGTCGATTTGTAGAACGAGAATCTGTTTCCACTATCTCAGGCAGAGCTAAACGATTGTCATTCAGTAACGATAGGGCCTTGAATCCTAGCATTTCTGGAACTGAAGTAGGTTCTCTGTGTTCTACTCAAAGAGCACAAGGATTCTCTACTTGTTCAAAACATTATGAACTATCCATAGGTTGTGTCCGTGAAGAACGCAATGCTAACAGTTTGAAAGACACCAAGTTTTCAATTGTTGATCAGATGCAAAGACTAGGCGCAGGTAAGGAGTCAGTCATCCCCCGGCGACAGACAACACCATCAAAGATAGCCTATAATGGTTCCAAGCGTGATTCACTCCCATCATCTTCTACTCCAGCTAGTAAATTTACCCCACCGTCTCGCAGAGCTTCCCTTCCACTTCCTACAAGATCCAAGGCCACGACTACGCCATACAGAGCCAATGCTGGTCCTCTTCGAAGTGTGGACTCTCCTGATATTTCTGTTAACGCACCACGAATTGATAAGATTGCTGAGTTCTCTTTGGCCCCTGGTGAGGATCATCCTCTCTTCCCTGTGCGTGGAACTTCATCAACTTCAGCTCAGTGTTCTTCTAGTTCCCCAAGGAGCGCTGCTGCTGACCACTCAATCACAAAGGACAAGTGTACCATCCAGGTTATGGACAAAGCCAGTGTCCCTACAAGCGCTGCTCTACAACACGTGGCAACTGCTGTTTCAAGCCATTCCTCAGCCGATTCTCATCAGCGCAAGTTTGACACCTCGTCTTACCAGCAACGCGCTGAGGCATTGGAAGGGTTGCTCGAGTTTAGTGCACGTCTTCTACAACAACAGAGGTTTGAAGAGCTTGAGGTGTTATTGAAACCGTTCGGGCCAGAGAAGGTTTCTCCAAGAGAAACAGCCATTTGGTTGACTAAGAGCTTCAAAGAAACTGTTGTCTAA

Protein sequence

>MsaT003412.1

MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIRLARQTDRIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANCVHFSEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTMYSGTFRGMVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWTDSNHARRSRFVERESVSTISGRAKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSTCSKHYELSIGCVREERNANSLKDTKFSIVDQMQRLGAGKESVIPRRQTTPSKIAYNGSKRDSLPSSSTPASKFTPPSRRASLPLPTRSKATTTPYRANAGPLRSVDSPDISVNAPRIDKIAEFSLAPGEDHPLFPVRGTSSTSAQCSSSSPRSAAADHSITKDKCTIQVMDKASVPTSAALQHVATAVSSHSSADSHQRKFDTSSYQQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTKSFKETVV*