AlfalfaGEDB | MsaG003428

M. sativa ssp. caerulea / MsaG003428

KEGG: -
GO: -
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003428	XP_003590633.1	95.417	240	8	2	1	240	1	237	2.21e-161	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003428	sp\|F4I8R6\|OFP12_ARATH	37.220	223	87	7	49	239	19	220	1.02e-26	105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003428	tr\|G7IDP8\|G7IDP8_MEDTR	95.417	240	8	2	1	240	1	237	1.06e-161	456

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003428	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003428	MsaG006383	0.818320	3.635188e-52	7.650250e-50
MsaG003428	MsaG029521	0.800194	2.700392e-48	3.667010e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003428	MtrunA17_Chr1g0185481	95.417	240	8	2	1	240	33	269	7.09e-165	456
MsaG003428	MtrunA17_Chr7g0259991	51.452	241	58	10	6	238	12	201	2.76e-60	189
MsaG003428	MtrunA17_Chr1g0205341	47.101	138	50	3	102	237	63	179	1.11e-34	124
MsaG003428	MtrunA17_Chr2g0331871	38.636	132	69	3	118	237	142	273	1.21e-17	80.5
MsaG003428	MtrunA17_Chr7g0267101	40.157	127	52	5	111	237	97	199	1.55e-17	79.7
MsaG003428	MtrunA17_Chr4g0004341	50.649	77	35	2	159	234	175	249	8.03e-16	75.1
MsaG003428	MtrunA17_Chr1g0210351	51.429	70	29	2	166	235	135	199	6.45e-15	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003428	AT1G05420.1	37.220	223	87	7	49	239	19	220	1.04e-27	105
MsaG003428	AT1G05420.2	37.220	223	87	7	49	239	35	236	1.56e-27	105
MsaG003428	AT2G32100.1	37.423	163	72	5	95	239	88	238	7.70e-24	96.3
MsaG003428	AT4G14860.1	57.143	77	31	1	165	239	96	172	3.54e-22	90.5
MsaG003428	AT1G79960.1	45.946	74	40	0	164	237	187	260	3.46e-17	79.3
MsaG003428	AT2G36050.1	33.600	125	55	2	113	237	77	173	8.87e-13	66.6
MsaG003428	AT3G52540.1	31.200	125	58	3	113	237	104	200	1.47e-11	63.2

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Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGTTGATGTAGTAA+AGG	0.520478	1:-56733026	None:intergenic
AAATCTGCTGGCTCAGGTTC+GGG	0.339475	1:-56733064	None:intergenic
AAATTCTTGATCATAATTGA+CGG	0.524121	1:-56732938	None:intergenic
AACACTCACAAGTTCATTCT+TGG	0.302219	1:+56733424	MsaT003428.1:CDS
AAGATCGATGCAAGAGATGG+TGG	0.583074	1:+56733315	MsaT003428.1:CDS
AAGGCTGCTGCGAAATCTGC+TGG	0.394882	1:-56733076	None:intergenic
AATTAATGAGTTGGAGCTAC+CGG	0.467305	1:-56733128	None:intergenic
AATTCTTGATCATAATTGAC+GGG	0.444957	1:-56732937	None:intergenic
ACCATGACTAAAATGACATG+AGG	0.563547	1:-56733471	None:intergenic
AGAGATGGTGGAGGCGCGAC+CGG	0.455026	1:+56733327	MsaT003428.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	56732764	56733486	56732764	ID=MsaG003428
Chr1	mRNA	56732764	56733486	56732764	ID=MsaT003428.1;Parent=MsaG003428
Chr1	exon	56732764	56733486	56732764	ID=MsaT003428.1.exon1;Parent=MsaT003428.1
Chr1	CDS	56732764	56733486	56732764	ID=cds.MsaT003428.1;Parent=MsaT003428.1

Gene Sequence

>MsaT003428.1

ATGCCAAACACAAGAAATCTGAGGAACCTTAACCTATGTTTTTCAAATTCAACTCTTGAATCAAAATCTCCACCCACAAGTCCAATTTCTACAACTATCAGTGAAGCAGCTTCCTCACATCAACATCATCATCAAATTCATCACAAACCTTCTTCATCTACATCTGCATCTTCCCCGTCAATTATGATCAAGAATTTCAACTCTCTCTATGACCCTTCCTTAACCTCAGACCACACTTTATGCTCTTCTTCACTCTCTACCACCTTTACTACATCAACCTCTTTTGAACTCGAAGTTGAACCCGAACCTGAGCCAGCAGATTTCGCAGCAGCCTTCGCCTCTCAACGCTTCTTCTTCTCCTCCCCCGGTAGCTCCAACTCATTAATTGAATATACAAACACAGATTGCATTCAGCATTCTTCGGTACCACCAATGGATAAGTCCAATAGTATTGAGCGTGAGAAGAAACAGGAGAAAGAGAAAGAGGAAGTTTTGTTCAACGGAAGTGTGGCAGTACCGACCTACTCACCTGATCCTTATATGGATTTTAGAAGATCGATGCAAGAGATGGTGGAGGCGCGACCGGAGTTGATGGATGTGAAATCAAATTGGAACATCTTGCATGAGTTGCTTCTTTGTTACCTTGCTCTCAACCCAAAGAACACTCACAAGTTCATTCTTGGTGCTTTTGCCGATCTTCTCGTAACCCTCATGTCATTTTAG

Protein sequence

>MsaT003428.1

MPNTRNLRNLNLCFSNSTLESKSPPTSPISTTISEAASSHQHHHQIHHKPSSSTSASSPSIMIKNFNSLYDPSLTSDHTLCSSSLSTTFTTSTSFELEVEPEPEPADFAAAFASQRFFFSSPGSSNSLIEYTNTDCIQHSSVPPMDKSNSIEREKKQEKEKEEVLFNGSVAVPTYSPDPYMDFRRSMQEMVEARPELMDVKSNWNILHELLLCYLALNPKNTHKFILGAFADLLVTLMSF*