AlfalfaGEDB | MsaG003470

M. sativa ssp. caerulea / MsaG003470

KEGG: K08065
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00808.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003470	XP_024636101.1	98.649	148	2	0	1	148	1	148	7.19e-104	304

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003470	sp\|Q8VYK4\|NFYB8_ARATH	70.946	148	40	2	2	149	6	150	3.13e-71	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003470	tr\|B7FGV1\|B7FGV1_MEDTR	98.649	148	2	0	1	148	1	148	3.43e-104	304

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003470	TF	NF-YB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000107	MsaG003470	0.800217	2.672077e-48	3.630427e-46
MsaG000135	MsaG003470	0.921104	1.412937e-87	2.883429e-83
MsaG000242	MsaG003470	0.811496	1.166788e-50	2.066726e-48
MsaG000325	MsaG003470	0.846008	5.348335e-59	2.533723e-56
MsaG000385	MsaG003470	0.851790	1.349687e-60	7.782717e-58
MsaG000408	MsaG003470	0.852692	7.499026e-61	4.463034e-58
MsaG000435	MsaG003470	0.801513	1.457068e-48	2.038538e-46
MsaG000459	MsaG003470	0.893990	8.399132e-75	3.062620e-71
MsaG000613	MsaG003470	0.870412	3.031031e-66	3.573609e-63
MsaG000638	MsaG003470	0.829918	7.066016e-55	2.040218e-52

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003470	MtrunA17_Chr1g0185911	97.297	148	2	1	1	148	1	146	1.94e-104	295
MsaG003470	MtrunA17_Chr7g0263601	81.102	127	20	2	11	137	12	134	2.33e-72	214
MsaG003470	MtrunA17_Chr5g0446491	68.939	132	35	1	1	132	1	126	5.37e-62	188
MsaG003470	MtrunA17_Chr3g0102351	67.883	137	39	2	1	134	1	135	3.00e-61	187
MsaG003470	MtrunA17_Chr2g0290491	65.693	137	35	2	9	145	3	127	2.23e-60	184
MsaG003470	MtrunA17_Chr8g0382931	68.644	118	29	1	17	126	8	125	4.54e-55	171
MsaG003470	MtrunA17_Chr4g0076321	73.148	108	27	1	22	127	10	117	5.84e-54	166
MsaG003470	MtrunA17_Chr8g0384451	72.632	95	26	0	28	122	39	133	4.29e-52	164
MsaG003470	MtrunA17_Chr2g0296321	71.579	95	27	0	28	122	65	159	5.53e-49	157
MsaG003470	MtrunA17_Chr4g0076381	63.063	111	37	1	16	122	41	151	1.00e-48	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003470	AT2G37060.2	70.946	148	40	2	2	149	6	150	3.18e-72	214
MsaG003470	AT2G37060.3	70.946	148	40	2	2	149	6	150	3.18e-72	214
MsaG003470	AT2G37060.1	70.946	148	40	2	2	149	6	150	3.18e-72	214
MsaG003470	AT2G38880.3	71.333	150	32	3	1	149	1	140	4.80e-70	207
MsaG003470	AT2G38880.2	72.603	146	29	3	1	145	1	136	1.32e-69	206
MsaG003470	AT2G38880.1	72.603	146	29	3	1	145	1	136	1.32e-69	206
MsaG003470	AT2G38880.5	72.603	146	29	3	1	145	1	136	1.32e-69	206
MsaG003470	AT3G53340.5	75.188	133	28	2	17	149	19	146	4.12e-68	204
MsaG003470	AT3G53340.1	75.188	133	28	2	17	149	19	146	4.12e-68	204
MsaG003470	AT2G38880.7	71.233	146	29	4	1	145	1	134	2.70e-66	198

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Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTTACCTTCAAAT+GGG	0.495925	1:-57373173	MsaT003470.1:CDS
AGACTATATAGAACCACTTA+AGG	0.485870	1:-57372495	MsaT003470.1:CDS
AGATGATTTGTTATGGGCTA+TGG	0.505790	1:-57372534	MsaT003470.1:CDS
AGTAAAGGATCTGTTAGAAA+CGG	0.549907	1:-57372130	MsaT003470.1:CDS
ATTCTGCTAATGTTAGCTAT+AGG	0.459912	1:+57373201	None:intergenic
CACTTAAGGTGTACCTAGCA+AGG	0.580922	1:-57372481	MsaT003470.1:CDS
CATTAGCAGAATCATGAAAA+AGG	0.328217	1:-57373190	MsaT003470.1:CDS
CTTGCTAGGTACACCTTAAG+TGG	0.449127	1:+57372482	None:intergenic
GAAGAAAGCCATGAGAGTGG+TGG	0.750494	1:-57373279	MsaT003470.1:CDS
GAAGCAGAAGAAGAGCCACG+TGG	0.770183	1:+57373246	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	57372069	57373325	57372069	ID=MsaG003470
Chr1	mRNA	57372069	57373325	57372069	ID=MsaT003470.1;Parent=MsaG003470
Chr1	exon	57372069	57372158	57372069	ID=MsaT003470.1.exon4;Parent=MsaT003470.1
Chr1	CDS	57372069	57372158	57372069	ID=cds.MsaT003470.1;Parent=MsaT003470.1
Chr1	exon	57372261	57372266	57372261	ID=MsaT003470.1.exon3;Parent=MsaT003470.1
Chr1	CDS	57372261	57372266	57372261	ID=cds.MsaT003470.1;Parent=MsaT003470.1
Chr1	exon	57372472	57372601	57372472	ID=MsaT003470.1.exon2;Parent=MsaT003470.1
Chr1	CDS	57372472	57372601	57372472	ID=cds.MsaT003470.1;Parent=MsaT003470.1
Chr1	exon	57373102	57373325	57373102	ID=MsaT003470.1.exon1;Parent=MsaT003470.1
Chr1	CDS	57373102	57373325	57373102	ID=cds.MsaT003470.1;Parent=MsaT003470.1

Gene Sequence

>MsaT003470.1

ATGGCAGATGCACCGAACCAATGCGAAGAAAGCCATGAGAGTGGTGGTGAACAGAGTCCACGTGGCTCTTCTTCTGCTTCACGTGAACAAGATCGTTTTTTGCCTATAGCTAACATTAGCAGAATCATGAAAAAGGCTTTACCTTCAAATGGGAAAATTGCGAAAGATGCTAAAGATACGATGCAAGAATGTGTTTCTGAATTCATCAGCTTTATTACTAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGACTATATAGAACCACTTAAGGTGTACCTAGCAAGGTTCAGAGAGTTAGAGGGTGATAGTAAAGGATCTGTTAGAAACGGTGATGGATCTGGTAGACGAGACCAAGTTGGCGGTCCTCCAGGTCAAAATGCTCAGGTGTGA

Protein sequence

>MsaT003470.1

MADAPNQCEESHESGGEQSPRGSSSASREQDRFLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARFRELEGDSKGSVRNGDGSGRRDQVGGPPGQNAQV*