Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003495 | XP_013468620.2 | 99.251 | 267 | 2 | 0 | 43 | 309 | 173 | 439 | 0.0 | 522 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003495 | tr|A0A072VLD7|A0A072VLD7_MEDTR | 100.000 | 40 | 0 | 0 | 1 | 40 | 1 | 40 | 2.61e-15 | 86.7 |
MsaG003495 | tr|A0A072VLD7|A0A072VLD7_MEDTR | 99.251 | 267 | 2 | 0 | 43 | 309 | 148 | 414 | 0.0 | 521 |
Gene ID | Type | Classification |
---|---|---|
MsaG003495 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000034 | MsaG003495 | 0.802749 | 8.136325e-49 | 1.170874e-46 |
MsaG001179 | MsaG003495 | 0.809221 | 3.593094e-50 | 6.021500e-48 |
MsaG001454 | MsaG003495 | 0.816670 | 8.521786e-52 | 1.718724e-49 |
MsaG001531 | MsaG003495 | 0.811448 | 1.194909e-50 | 2.114048e-48 |
MsaG001859 | MsaG003495 | 0.821793 | 5.881357e-53 | 1.356336e-50 |
MsaG003276 | MsaG003495 | 0.804361 | 3.780723e-49 | 5.647692e-47 |
MsaG003374 | MsaG003495 | 0.803707 | 5.163398e-49 | 7.597052e-47 |
MsaG003468 | MsaG003495 | 0.805907 | 1.801451e-49 | 2.789502e-47 |
MsaG003513 | MsaG003495 | 0.804211 | 4.063074e-49 | 6.048265e-47 |
MsaG003495 | MsaG004108 | 0.819443 | 2.025635e-52 | 4.390123e-50 |
MsaG003495 | MsaG004202 | 0.818538 | 3.246744e-52 | 6.871481e-50 |
MsaG003495 | MsaG005838 | 0.803142 | 6.753664e-49 | 9.807575e-47 |
MsaG003495 | MsaG005839 | 0.804794 | 3.074327e-49 | 4.638603e-47 |
MsaG003495 | MsaG005902 | 0.825975 | 6.218098e-54 | 1.606958e-51 |
MsaG003495 | MsaG006220 | 0.812255 | 7.989402e-51 | 1.441760e-48 |
MsaG003495 | MsaG007067 | 0.812106 | 8.606373e-51 | 1.547389e-48 |
MsaG003495 | MsaG007429 | 0.801716 | 1.323964e-48 | 1.860898e-46 |
MsaG003495 | MsaG007570 | 0.837407 | 9.705892e-57 | 3.495775e-54 |
MsaG003495 | MsaG007868 | 0.809770 | 2.742296e-50 | 4.657246e-48 |
MsaG003495 | MsaG007879 | 0.830431 | 5.303598e-55 | 1.553934e-52 |
MsaG003495 | MsaG010066 | 0.809621 | 2.951875e-50 | 4.995093e-48 |
MsaG003495 | MsaG010299 | 0.807644 | 7.767504e-50 | 1.253275e-47 |
MsaG003495 | MsaG010394 | 0.802389 | 9.642485e-49 | 1.376313e-46 |
MsaG003495 | MsaG011114 | 0.814987 | 2.013643e-51 | 3.891377e-49 |
MsaG003495 | MsaG011115 | 0.807092 | 1.016147e-49 | 1.618099e-47 |
MsaG003495 | MsaG011646 | 0.822308 | 4.473058e-53 | 1.045965e-50 |
MsaG003495 | MsaG012341 | 0.828366 | 1.674401e-54 | 4.626361e-52 |
MsaG003495 | MsaG012424 | 0.801643 | 1.370471e-48 | 1.923087e-46 |
MsaG003495 | MsaG013644 | 0.828168 | 1.867793e-54 | 5.131863e-52 |
MsaG003495 | MsaG013909 | 0.804740 | 3.155581e-49 | 4.755206e-47 |
MsaG003495 | MsaG014110 | 0.807534 | 8.196389e-50 | 1.319003e-47 |
MsaG003495 | MsaG015705 | 0.810460 | 1.950536e-50 | 3.368646e-48 |
MsaG003495 | MsaG016427 | 0.804308 | 3.878493e-49 | 5.786549e-47 |
MsaG003495 | MsaG018243 | 0.834151 | 6.428923e-56 | 2.099384e-53 |
MsaG003495 | MsaG018447 | 0.837123 | 1.146950e-56 | 4.095095e-54 |
MsaG003495 | MsaG018452 | 0.820316 | 1.282422e-52 | 2.844332e-50 |
MsaG003495 | MsaG019076 | 0.820706 | 1.044372e-52 | 2.340125e-50 |
MsaG003495 | MsaG020314 | 0.820407 | 1.222274e-52 | 2.717371e-50 |
MsaG003495 | MsaG020450 | 0.800272 | 2.603937e-48 | 3.542318e-46 |
MsaG003495 | MsaG021405 | 0.806726 | 1.212989e-49 | 1.915020e-47 |
MsaG003495 | MsaG021575 | 0.823995 | 1.814506e-53 | 4.441010e-51 |
MsaG003495 | MsaG021668 | 0.859487 | 7.839533e-63 | 5.977607e-60 |
MsaG003495 | MsaG021629 | 0.807370 | 8.877906e-50 | 1.423064e-47 |
MsaG003495 | MsaG021737 | 0.811779 | 1.012928e-50 | 1.806701e-48 |
MsaG003495 | MsaG021896 | 0.842283 | 5.286463e-58 | 2.218279e-55 |
MsaG003495 | MsaG022438 | 0.813786 | 3.701819e-51 | 6.941092e-49 |
MsaG003495 | MsaG022440 | 0.802906 | 7.551597e-49 | 1.090681e-46 |
MsaG003495 | MsaG022441 | 0.826489 | 4.696259e-54 | 1.231151e-51 |
MsaG003495 | MsaG022465 | 0.816324 | 1.017705e-51 | 2.034537e-49 |
MsaG003495 | MsaG023591 | 0.838741 | 4.421607e-57 | 1.659469e-54 |
MsaG003495 | MsaG023744 | 0.812719 | 6.331357e-51 | 1.155843e-48 |
MsaG003495 | MsaG024014 | 0.810702 | 1.730630e-50 | 3.006385e-48 |
MsaG003495 | MsaG025691 | 0.806805 | 1.167504e-49 | 1.846603e-47 |
MsaG003495 | MsaG026740 | 0.810019 | 2.425953e-50 | 4.144698e-48 |
MsaG003495 | MsaG027232 | 0.803032 | 7.113953e-49 | 1.030463e-46 |
MsaG003495 | MsaG028026 | 0.809736 | 2.789169e-50 | 4.732868e-48 |
MsaG003495 | MsaG028375 | 0.813200 | 4.972042e-51 | 9.186743e-49 |
MsaG003495 | MsaG029188 | 0.804937 | 2.871604e-49 | 4.347099e-47 |
MsaG003495 | MsaG029204 | 0.822132 | 4.910721e-53 | 1.142884e-50 |
MsaG003495 | MsaG029388 | 0.803861 | 4.799401e-49 | 7.086500e-47 |
MsaG003495 | MsaG029862 | 0.807001 | 1.061894e-49 | 1.687335e-47 |
MsaG003495 | MsaG029899 | 0.820716 | 1.038741e-52 | 2.328160e-50 |
MsaG003495 | MsaG030198 | 0.820281 | 1.305773e-52 | 2.893460e-50 |
MsaG003495 | MsaG030840 | 0.808737 | 4.556867e-50 | 7.548742e-48 |
MsaG003495 | MsaG033301 | 0.800645 | 2.188376e-48 | 3.002284e-46 |
MsaG003495 | MsaG033343 | 0.822561 | 3.909509e-53 | 9.204182e-51 |
MsaG003495 | MsaG033369 | 0.800358 | 2.501828e-48 | 3.410113e-46 |
MsaG003495 | MsaG033370 | 0.827040 | 3.473815e-54 | 9.247207e-52 |
MsaG003495 | MsaG034287 | 0.821618 | 6.452852e-53 | 1.481305e-50 |
MsaG003495 | MsaG034288 | 0.814113 | 3.136659e-51 | 5.929703e-49 |
MsaG003495 | MsaG034659 | 0.809289 | 3.474738e-50 | 5.832650e-48 |
MsaG003495 | MsaG035210 | 0.861145 | 2.484648e-63 | 2.017831e-60 |
MsaG003495 | MsaG035270 | 0.800172 | 2.728220e-48 | 3.702969e-46 |
MsaG003495 | MsaG035511 | 0.840458 | 1.589480e-57 | 6.294662e-55 |
MsaG003495 | MsaG038986 | 0.808983 | 4.038429e-50 | 6.729481e-48 |
MsaG003495 | MsaG040994 | 0.817988 | 4.318752e-52 | 9.011528e-50 |
MsaG003495 | MsaG041949 | 0.813542 | 4.184720e-51 | 7.798577e-49 |
MsaG003495 | MsaG043663 | 0.805371 | 2.331141e-49 | 3.564732e-47 |
MsaG003495 | MsaG043665 | 0.836124 | 2.054395e-56 | 7.117710e-54 |
MsaG003495 | MsaG044284 | 0.813257 | 4.832400e-51 | 8.941174e-49 |
MsaG003495 | MsaG044352 | 0.831937 | 2.271684e-55 | 6.952948e-53 |
MsaG003495 | MsaG044354 | 0.817815 | 4.723833e-52 | 9.812880e-50 |
MsaG003495 | MsaG044376 | 0.803392 | 5.998428e-49 | 8.761386e-47 |
MsaG003495 | MsaG045021 | 0.805185 | 2.548592e-49 | 3.880595e-47 |
MsaG003495 | MsaG045380 | 0.801316 | 1.598254e-48 | 2.226093e-46 |
MsaG003495 | MsaG045376 | 0.813718 | 3.831112e-51 | 7.170989e-49 |
MsaG003495 | MsaG045641 | 0.806333 | 1.466781e-49 | 2.294355e-47 |
MsaG003495 | MsaG046051 | 0.842341 | 5.104001e-58 | 2.145790e-55 |
MsaG003495 | MsaG046307 | 0.830231 | 5.932642e-55 | 1.728316e-52 |
MsaG003495 | MsaG046384 | 0.814654 | 2.385507e-51 | 4.571216e-49 |
MsaG003495 | MsaG046630 | 0.826774 | 4.020083e-54 | 1.062205e-51 |
MsaG003495 | MsaG046722 | 0.810919 | 1.554202e-50 | 2.714243e-48 |
MsaG003495 | MsaG046816 | 0.829705 | 7.960221e-55 | 2.284366e-52 |
MsaG003495 | MsaG008334 | 0.830620 | 4.770189e-55 | 1.405165e-52 |
MsaG003495 | MsaG007590 | 0.803994 | 4.504024e-49 | 6.670973e-47 |
MsaG003495 | MsaG008770 | 0.821119 | 8.400438e-53 | 1.903077e-50 |
MsaG003495 | MsaG008796 | 0.814155 | 3.071901e-51 | 5.813229e-49 |
MsaG003495 | MsaG014891 | 0.800878 | 1.961933e-48 | 2.705741e-46 |
MsaG003495 | MsaG014993 | 0.824196 | 1.628728e-53 | 4.008067e-51 |
MsaG003495 | MsaG019037 | 0.869577 | 5.661650e-66 | 6.445746e-63 |
MsaG003495 | MsaG027703 | 0.807363 | 8.908284e-50 | 1.427694e-47 |
MsaG003495 | MsaG027559 | 0.816805 | 7.950120e-52 | 1.609076e-49 |
MsaG003495 | MsaG027786 | 0.812902 | 5.776208e-51 | 1.059317e-48 |
MsaG003495 | MsaG032859 | 0.826463 | 4.764565e-54 | 1.248187e-51 |
MsaG003495 | MsaG031221 | 0.817358 | 5.981268e-52 | 1.227950e-49 |
MsaG003495 | MsaG032092 | 0.803990 | 4.513006e-49 | 6.683646e-47 |
MsaG003495 | MsaG037163 | 0.804531 | 3.486599e-49 | 5.228657e-47 |
MsaG003495 | MsaG037161 | 0.802390 | 9.641258e-49 | 1.376145e-46 |
MsaG003495 | MsaG038151 | 0.800726 | 2.106349e-48 | 2.895074e-46 |
MsaG003495 | MsaG039770 | 0.818269 | 3.732036e-52 | 7.843837e-50 |
MsaG003495 | MsaG035677 | 0.804541 | 3.470747e-49 | 5.206117e-47 |
MsaG003495 | MsaG039501 | 0.802658 | 8.492762e-49 | 1.219678e-46 |
MsaG003495 | MsaG042295 | 0.801372 | 1.556361e-48 | 2.170535e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003495 | MtrunA17_Chr1g0186171 | 99.251 | 267 | 2 | 0 | 43 | 309 | 148 | 414 | 0.0 | 521 |
MsaG003495 | MtrunA17_Chr1g0186171 | 100.000 | 40 | 0 | 0 | 1 | 40 | 1 | 40 | 5.03e-19 | 86.7 |
MsaG003495 | MtrunA17_Chr1g0168401 | 68.401 | 269 | 67 | 7 | 43 | 309 | 163 | 415 | 1.98e-115 | 339 |
MsaG003495 | MtrunA17_Chr8g0387241 | 39.873 | 158 | 69 | 5 | 103 | 255 | 133 | 269 | 2.08e-24 | 100 |
MsaG003495 | MtrunA17_Chr2g0311591 | 56.164 | 73 | 32 | 0 | 192 | 264 | 151 | 223 | 1.64e-21 | 92.0 |
MsaG003495 | MtrunA17_Chr5g0397361 | 54.667 | 75 | 34 | 0 | 180 | 254 | 142 | 216 | 4.13e-20 | 87.8 |
MsaG003495 | MtrunA17_Chr2g0327621 | 45.918 | 98 | 51 | 1 | 159 | 256 | 105 | 200 | 2.29e-19 | 85.5 |
MsaG003495 | MtrunA17_Chr4g0030421 | 57.377 | 61 | 26 | 0 | 196 | 256 | 20 | 80 | 2.25e-18 | 79.7 |
MsaG003495 | MtrunA17_Chr1g0147111 | 36.296 | 135 | 69 | 4 | 123 | 256 | 159 | 277 | 7.45e-17 | 79.0 |
MsaG003495 | MtrunA17_Chr3g0126721 | 60.000 | 55 | 22 | 0 | 201 | 255 | 220 | 274 | 3.65e-15 | 74.3 |
MsaG003495 | MtrunA17_Chr3g0136701 | 42.308 | 78 | 39 | 1 | 182 | 259 | 209 | 280 | 3.32e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003495 | AT1G04500.3 | 57.358 | 265 | 97 | 8 | 58 | 309 | 116 | 377 | 6.45e-91 | 276 |
MsaG003495 | AT1G04500.4 | 57.358 | 265 | 97 | 8 | 58 | 309 | 125 | 386 | 6.98e-91 | 276 |
MsaG003495 | AT1G04500.1 | 57.358 | 265 | 97 | 8 | 58 | 309 | 125 | 386 | 6.98e-91 | 276 |
MsaG003495 | AT2G33350.2 | 56.159 | 276 | 92 | 11 | 55 | 309 | 142 | 409 | 4.57e-82 | 254 |
MsaG003495 | AT2G33350.4 | 56.159 | 276 | 92 | 11 | 55 | 309 | 131 | 398 | 4.71e-82 | 253 |
MsaG003495 | AT2G33350.5 | 56.159 | 276 | 92 | 11 | 55 | 309 | 151 | 418 | 1.06e-81 | 253 |
MsaG003495 | AT2G33350.1 | 55.235 | 277 | 94 | 11 | 55 | 309 | 142 | 410 | 2.58e-80 | 249 |
MsaG003495 | AT1G04500.2 | 49.468 | 188 | 79 | 8 | 58 | 232 | 125 | 309 | 6.42e-44 | 154 |
MsaG003495 | AT2G33350.3 | 48.485 | 198 | 74 | 10 | 55 | 232 | 142 | 331 | 3.78e-41 | 146 |
MsaG003495 | AT5G41380.1 | 56.250 | 96 | 33 | 3 | 160 | 255 | 173 | 259 | 4.47e-24 | 100 |
MsaG003495 | AT1G63820.1 | 39.837 | 123 | 72 | 1 | 155 | 275 | 134 | 256 | 1.30e-23 | 98.6 |
MsaG003495 | AT3G12890.1 | 52.809 | 89 | 36 | 1 | 202 | 290 | 130 | 212 | 1.57e-22 | 94.7 |
MsaG003495 | AT4G27900.1 | 38.144 | 97 | 45 | 2 | 160 | 256 | 178 | 259 | 3.04e-16 | 77.4 |
MsaG003495 | AT4G27900.2 | 38.144 | 97 | 45 | 2 | 160 | 256 | 178 | 259 | 3.04e-16 | 77.4 |
MsaG003495 | AT5G59990.1 | 39.850 | 133 | 63 | 3 | 159 | 291 | 120 | 235 | 2.30e-15 | 74.7 |
MsaG003495 | AT5G53420.2 | 65.957 | 47 | 16 | 0 | 209 | 255 | 137 | 183 | 3.59e-15 | 72.8 |
MsaG003495 | AT5G53420.5 | 65.957 | 47 | 16 | 0 | 209 | 255 | 137 | 183 | 3.59e-15 | 72.8 |
MsaG003495 | AT5G53420.4 | 65.957 | 47 | 16 | 0 | 209 | 255 | 137 | 183 | 3.59e-15 | 72.8 |
MsaG003495 | AT5G53420.1 | 65.957 | 47 | 16 | 0 | 209 | 255 | 216 | 262 | 7.27e-15 | 73.6 |
MsaG003495 | AT5G24930.1 | 40.000 | 70 | 42 | 0 | 191 | 260 | 275 | 344 | 9.50e-11 | 62.4 |
Find 68 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 1:-57784406 | None:intergenic |
TGATTCAGTTGTACCTCTTA+TGG | 0.188845 | 1:+57783237 | MsaT003495.1:CDS |
TTTGCAAAGAATGATGATTT+TGG | 0.203362 | 1:+57784753 | MsaT003495.1:CDS |
TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 1:-57782824 | None:intergenic |
TCCTGTAAACATTGATATAA+AGG | 0.285030 | 1:-57782743 | None:intergenic |
GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 1:+57783537 | MsaT003495.1:CDS |
TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 1:+57783340 | MsaT003495.1:CDS |
TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 1:+57783429 | MsaT003495.1:CDS |
TCCTTTATATCAATGTTTAC+AGG | 0.317206 | 1:+57782742 | MsaT003495.1:CDS |
TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 1:-57782779 | None:intergenic |
ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 1:+57783418 | MsaT003495.1:CDS |
GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 1:+57783409 | MsaT003495.1:CDS |
AAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 1:+57784510 | MsaT003495.1:CDS |
GATTCAGTTGTACCTCTTAT+GGG | 0.354950 | 1:+57783238 | MsaT003495.1:CDS |
CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 1:+57784420 | MsaT003495.1:CDS |
AAAACAGGTGGTAATGATAA+AGG | 0.370742 | 1:-57783265 | None:intergenic |
CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 1:+57783481 | MsaT003495.1:CDS |
GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 1:-57784355 | None:intergenic |
AGAGGTACAACTGAATCATT+TGG | 0.397376 | 1:-57783232 | None:intergenic |
CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 1:-57782823 | None:intergenic |
GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 1:-57783523 | None:intergenic |
AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 1:-57785119 | None:intergenic |
TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 1:+57783349 | MsaT003495.1:CDS |
GCAACTATTCCATTCAATCA+TGG | 0.437657 | 1:+57785128 | MsaT003495.1:CDS |
GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 1:+57783421 | MsaT003495.1:CDS |
TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 1:-57783334 | None:intergenic |
ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 1:+57783190 | MsaT003495.1:CDS |
TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 1:+57783354 | MsaT003495.1:CDS |
TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 1:+57785054 | MsaT003495.1:CDS |
GACACCAGAAATCTCAAACT+TGG | 0.464943 | 1:+57784402 | MsaT003495.1:CDS |
CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 1:-57782778 | None:intergenic |
TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 1:+57784806 | MsaT003495.1:CDS |
GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 1:+57784424 | MsaT003495.1:CDS |
ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 1:-57783547 | None:intergenic |
GATAGCAGACCTCGAGTTAG+AGG | 0.482620 | 1:+57784726 | MsaT003495.1:CDS |
GAATCAAATCCATGATTGAA+TGG | 0.483820 | 1:-57785137 | None:intergenic |
CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 1:+57783191 | MsaT003495.1:CDS |
GATAAAGGAGCTCCCATAAG+AGG | 0.487003 | 1:-57783250 | None:intergenic |
GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 1:-57783388 | None:intergenic |
ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 1:+57783373 | MsaT003495.1:CDS |
GTATGCATGCCGCAAAACTC+TGG | 0.507026 | 1:+57784701 | MsaT003495.1:intron |
TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 1:+57783513 | MsaT003495.1:CDS |
AACACCCTCTGAATAGGATC+AGG | 0.520235 | 1:-57783517 | None:intergenic |
ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 1:-57783364 | None:intergenic |
GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 1:+57784358 | MsaT003495.1:CDS |
ACACAAGAACTTGATTATCA+AGG | 0.541577 | 1:+57783472 | MsaT003495.1:CDS |
GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 1:-57783325 | None:intergenic |
GAAAACTTTCTGTTGAACAA+AGG | 0.552214 | 1:+57784446 | MsaT003495.1:CDS |
GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 1:-57783313 | None:intergenic |
ACTACAGGTAGTTGTGAAAG+AGG | 0.563267 | 1:+57785042 | MsaT003495.1:intron |
GATATATTTGCTCATATCAG+TGG | 0.567084 | 1:+57785088 | MsaT003495.1:CDS |
AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 1:-57783368 | None:intergenic |
TCTAACTCGAGGTCTGCTAT+CGG | 0.575030 | 1:-57784724 | None:intergenic |
CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 1:+57784364 | MsaT003495.1:CDS |
AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 1:-57783333 | None:intergenic |
TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 1:+57783357 | MsaT003495.1:CDS |
AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 1:+57782826 | MsaT003495.1:CDS |
GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 1:-57783544 | None:intergenic |
ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 1:+57783512 | MsaT003495.1:CDS |
GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 1:-57783343 | None:intergenic |
GCAAATCGTCCTCTAACTCG+AGG | 0.634840 | 1:-57784735 | None:intergenic |
GATATGAGCAAATATATCTG+AGG | 0.650959 | 1:-57785083 | None:intergenic |
TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 1:-57783543 | None:intergenic |
GATACTAATAGAACTGCTAG+TGG | 0.652698 | 1:+57784777 | MsaT003495.1:CDS |
GTAAGTTGAACATGATGATG+AGG | 0.662251 | 1:-57783169 | None:intergenic |
ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 1:-57783203 | None:intergenic |
TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 1:-57784395 | None:intergenic |
TAAAGGAAATGTAAACAACA+TGG | 0.694278 | 1:-57782726 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 57782728 | 57785156 | 57782728 | ID=MsaG003495 |
Chr1 | mRNA | 57782728 | 57785156 | 57782728 | ID=MsaT003495.1;Parent=MsaG003495 |
Chr1 | exon | 57782728 | 57782847 | 57782728 | ID=MsaT003495.1.exon1;Parent=MsaT003495.1 |
Chr1 | CDS | 57782728 | 57782847 | 57782728 | ID=cds.MsaT003495.1;Parent=MsaT003495.1 |
Chr1 | exon | 57783169 | 57783558 | 57783169 | ID=MsaT003495.1.exon2;Parent=MsaT003495.1 |
Chr1 | CDS | 57783169 | 57783558 | 57783169 | ID=cds.MsaT003495.1;Parent=MsaT003495.1 |
Chr1 | exon | 57784346 | 57784531 | 57784346 | ID=MsaT003495.1.exon3;Parent=MsaT003495.1 |
Chr1 | CDS | 57784346 | 57784531 | 57784346 | ID=cds.MsaT003495.1;Parent=MsaT003495.1 |
Chr1 | exon | 57784702 | 57784827 | 57784702 | ID=MsaT003495.1.exon4;Parent=MsaT003495.1 |
Chr1 | CDS | 57784702 | 57784827 | 57784702 | ID=cds.MsaT003495.1;Parent=MsaT003495.1 |
Chr1 | exon | 57785049 | 57785156 | 57785049 | ID=MsaT003495.1.exon5;Parent=MsaT003495.1 |
Chr1 | CDS | 57785049 | 57785156 | 57785049 | ID=cds.MsaT003495.1;Parent=MsaT003495.1 |
Gene Sequence |
Protein sequence |