AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003580 MtrunA17_Chr1g0187361 88.393 112 13 0 1 112 1 112 1.26e-67 203
MsaG003580 MtrunA17_Chr1g0188671 86.607 112 15 0 1 112 39 150 2.13e-67 204
MsaG003580 MtrunA17_Chr3g0099411 81.667 120 19 1 1 117 1 120 4.40e-67 201
MsaG003580 MtrunA17_Chr1g0206721 81.667 120 19 1 1 117 1 120 1.04e-66 201
MsaG003580 MtrunA17_Chr1g0206701 81.667 120 19 1 1 117 1 120 5.63e-66 199
MsaG003580 MtrunA17_Chr2g0292791 79.167 120 22 1 1 117 1 120 5.53e-64 194
MsaG003580 MtrunA17_Chr1g0208561 80.508 118 20 1 1 115 1 118 2.11e-63 192
MsaG003580 MtrunA17_Chr3g0089141 80.508 118 20 1 1 115 1 118 2.28e-63 192
MsaG003580 MtrunA17_Chr1g0206991 77.500 120 24 1 1 117 1 120 2.77e-63 190
MsaG003580 MtrunA17_Chr5g0422941 80.357 112 22 0 1 112 1 112 1.48e-62 190
MsaG003580 MtrunA17_Chr2g0317451 78.571 112 24 0 1 112 1 112 1.98e-62 190
MsaG003580 MtrunA17_Chr2g0317481 78.571 112 24 0 1 112 1 112 2.41e-62 190
MsaG003580 MtrunA17_Chr1g0149391 82.727 110 19 0 1 110 1 110 6.74e-62 189
MsaG003580 MtrunA17_Chr3g0099421 77.500 120 24 1 1 117 26 145 7.08e-62 189
MsaG003580 MtrunA17_Chr8g0355091 77.500 120 24 1 1 117 1 120 1.72e-61 187
MsaG003580 MtrunA17_Chr5g0419601 78.571 112 24 0 1 112 1 112 2.12e-60 185
MsaG003580 MtrunA17_Chr2g0325971 80.909 110 21 0 1 110 1 110 2.44e-59 182
MsaG003580 MtrunA17_Chr2g0300421 76.724 116 27 0 1 116 1 116 9.14e-59 179
MsaG003580 MtrunA17_Chr1g0208581 73.729 118 28 1 1 115 1 118 4.65e-58 179
MsaG003580 MtrunA17_Chr2g0300441 74.138 116 30 0 1 116 1 116 2.31e-56 174
MsaG003580 MtrunA17_Chr3g0089151 72.321 112 31 0 1 112 1 112 3.40e-56 171
MsaG003580 MtrunA17_Chr5g0422421 75.676 111 27 0 1 111 1 111 4.47e-56 174
MsaG003580 MtrunA17_Chr1g0206691 74.747 99 25 0 18 116 1 99 1.89e-49 156
MsaG003580 MtrunA17_Chr3g0111931 72.826 92 25 0 21 112 2 93 2.65e-46 145
MsaG003580 MtrunA17_Chr3g0085241 59.813 107 43 0 3 109 35 141 3.66e-43 141
MsaG003580 MtrunA17_Chr3g0119901 59.633 109 44 0 1 109 1 109 7.46e-43 139
MsaG003580 MtrunA17_Chr7g0238991 65.686 102 34 1 16 116 27 128 1.12e-40 135
MsaG003580 MtrunA17_Chr1g0187351 86.364 66 9 0 18 83 1 66 4.53e-37 120
MsaG003580 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 4.68e-33 110
MsaG003580 MtrunA17_Chr8g0379021 54.651 86 32 1 5 90 8 86 6.63e-29 103
MsaG003580 MtrunA17_Chr1g0169761 45.045 111 55 2 9 115 2 110 4.97e-27 98.2
MsaG003580 MtrunA17_Chr4g0018951 54.444 90 41 0 5 94 8 97 6.28e-27 97.8
MsaG003580 MtrunA17_Chr2g0333981 52.326 86 34 1 5 90 8 86 7.42e-27 97.8
MsaG003580 MtrunA17_Chr1g0175601 44.037 109 59 1 9 115 2 110 9.85e-27 97.4
MsaG003580 MtrunA17_Chr8g0376821 57.746 71 30 0 9 79 2 72 8.30e-26 95.1
MsaG003580 MtrunA17_Chr4g0074101 41.270 126 55 4 9 115 2 127 9.56e-26 95.5
MsaG003580 MtrunA17_Chr3g0111831 68.750 64 20 0 16 79 11 74 2.28e-25 91.3
MsaG003580 MtrunA17_Chr1g0180591 44.954 109 58 2 9 115 2 110 1.27e-24 92.0
MsaG003580 MtrunA17_Chr1g0175611 51.948 77 37 0 9 85 2 78 5.91e-24 90.1
MsaG003580 MtrunA17_Chr8g0357771 52.564 78 37 0 9 86 2 79 6.70e-24 90.5
MsaG003580 MtrunA17_Chr8g0356071 54.930 71 32 0 9 79 2 72 4.68e-23 87.8
MsaG003580 MtrunA17_Chr4g0071601 53.488 86 33 1 5 90 8 86 1.34e-20 82.0
MsaG003580 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 5.44e-19 78.2
MsaG003580 MtrunA17_Chr4g0052081 53.623 69 32 0 9 77 2 70 6.49e-19 77.4
MsaG003580 MtrunA17_Chr3g0077501 51.471 68 33 0 9 76 2 69 1.00e-18 77.8
MsaG003580 MtrunA17_Chr4g0052061 50.725 69 34 0 9 77 2 70 1.91e-18 75.9
MsaG003580 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.97e-18 75.5
MsaG003580 MtrunA17_Chr3g0097101 48.649 74 38 0 3 76 11 84 2.99e-18 77.0
MsaG003580 MtrunA17_Chr4g0049901 56.061 66 29 0 10 75 29 94 4.44e-18 76.6
MsaG003580 MtrunA17_Chr2g0284911 40.777 103 60 1 9 111 17 118 4.81e-18 76.6
MsaG003580 MtrunA17_Chr5g0427401 47.887 71 37 0 9 79 2 72 5.37e-18 75.9
MsaG003580 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 1.09e-17 75.5
MsaG003580 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.60e-17 74.7
MsaG003580 MtrunA17_Chr3g0134451 43.137 102 55 3 9 109 2 101 2.09e-17 75.9
MsaG003580 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 2.54e-17 74.7
MsaG003580 MtrunA17_Chr4g0049541 36.111 108 68 1 9 115 2 109 2.58e-17 74.3
MsaG003580 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 3.21e-17 73.2
MsaG003580 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 3.60e-17 74.3
MsaG003580 MtrunA17_Chr2g0279821 35.714 112 63 2 9 115 2 109 4.09e-17 73.9
MsaG003580 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 5.98e-17 73.6
MsaG003580 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 8.73e-17 73.2
MsaG003580 MtrunA17_Chr7g0246431 50.746 67 33 0 10 76 3 69 9.81e-17 72.4
MsaG003580 MtrunA17_Chr1g0173161 57.143 56 24 0 9 64 2 57 2.37e-16 68.6
MsaG003580 MtrunA17_Chr5g0412271 47.761 67 35 0 10 76 3 69 4.48e-16 70.9
MsaG003580 MtrunA17_Chr5g0412461 47.761 67 35 0 10 76 3 69 5.01e-16 70.9
MsaG003580 MtrunA17_Chr7g0246381 51.515 66 27 1 9 69 2 67 6.85e-16 67.0
MsaG003580 MtrunA17_Chr1g0164791 50.000 70 33 1 9 76 2 71 9.85e-16 70.1
MsaG003580 MtrunA17_Chr4g0061671 29.560 159 59 4 9 117 2 157 1.06e-15 69.3
MsaG003580 MtrunA17_Chr5g0425191 59.259 54 22 0 8 61 1 54 1.26e-15 67.0
MsaG003580 MtrunA17_Chr5g0411691 45.588 68 37 0 9 76 2 69 1.36e-15 70.1
MsaG003580 MtrunA17_Chr2g0308251 45.833 72 39 0 9 80 2 73 1.41e-15 66.2
MsaG003580 MtrunA17_Chr6g0455511 47.826 69 35 1 9 76 2 70 1.48e-15 70.1
MsaG003580 MtrunA17_Chr8g0366231 46.377 69 36 1 9 76 2 70 1.61e-15 69.7
MsaG003580 MtrunA17_Chr5g0404951 48.571 70 34 1 9 76 2 71 1.76e-15 69.3
MsaG003580 MtrunA17_Chr7g0220121 43.056 72 40 1 9 79 2 73 1.91e-15 69.7
MsaG003580 MtrunA17_Chr7g0220111 47.826 69 35 1 9 76 2 70 2.21e-15 69.3
MsaG003580 MtrunA17_Chr4g0044071 56.140 57 25 0 9 65 2 58 2.92e-15 66.2
MsaG003580 MtrunA17_Chr5g0420081 51.786 56 27 0 9 64 2 57 3.89e-15 68.6
MsaG003580 MtrunA17_Chr5g0427921 47.368 57 30 0 9 65 2 58 4.07e-15 64.7
MsaG003580 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 4.14e-15 65.5
MsaG003580 MtrunA17_Chr5g0420091 53.571 56 26 0 9 64 2 57 4.66e-15 68.2
MsaG003580 MtrunA17_Chr1g0159661 45.312 64 35 0 9 72 2 65 7.22e-15 67.0
MsaG003580 MtrunA17_Chr3g0122251 55.357 56 25 0 9 64 2 57 7.31e-15 68.2
MsaG003580 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.04e-14 67.4
MsaG003580 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 1.29e-14 66.6
MsaG003580 MtrunA17_Chr8g0345001 42.466 73 42 0 10 82 19 91 2.14e-13 63.2
MsaG003580 MtrunA17_Chr3g0093131 51.852 54 25 1 26 78 36 89 2.96e-12 60.5
MsaG003580 MtrunA17_Chr4g0060841 39.326 89 49 3 9 93 2 89 3.26e-12 61.6
MsaG003580 MtrunA17_Chr4g0025531 39.506 81 49 0 1 81 1 81 9.25e-12 59.7
MsaG003580 MtrunA17_Chr1g0166611 58.696 46 19 0 20 65 17 62 1.77e-11 57.0
MsaG003580 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 2.04e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003580 AT5G60440.1 64.486 107 36 1 5 109 3 109 7.78e-44 145
MsaG003580 AT4G36590.1 54.701 117 48 1 5 116 3 119 1.57e-35 122
MsaG003580 AT1G01530.1 54.867 113 49 1 4 116 2 112 2.28e-35 122
MsaG003580 AT1G65360.1 52.679 112 51 1 5 116 3 112 2.66e-34 118
MsaG003580 AT2G24840.1 56.075 107 39 3 6 109 60 161 2.52e-30 109
MsaG003580 AT2G34440.1 44.118 102 56 1 9 110 2 102 5.95e-24 90.5
MsaG003580 AT3G04100.1 39.423 104 60 1 2 102 7 110 1.99e-23 90.1
MsaG003580 AT1G72350.1 57.534 73 29 1 9 81 43 113 1.55e-22 88.2
MsaG003580 AT3G66656.1 55.882 68 30 0 9 76 2 69 8.29e-22 85.1
MsaG003580 AT4G09960.2 45.918 98 48 2 9 101 2 99 8.55e-20 80.9
MsaG003580 AT4G09960.6 45.918 98 48 2 9 101 3 100 9.95e-20 80.9
MsaG003580 AT4G09960.1 45.918 98 48 2 9 101 2 99 1.03e-19 80.9
MsaG003580 AT4G09960.5 45.918 98 48 2 9 101 12 109 1.59e-19 80.9
MsaG003580 AT4G09960.3 45.918 98 48 2 9 101 28 125 2.08e-19 80.5
MsaG003580 AT4G09960.4 45.918 98 48 2 9 101 97 194 4.67e-19 80.9
MsaG003580 AT2G45650.1 52.941 68 32 0 9 76 2 69 4.99e-19 79.7
MsaG003580 AT2G45660.2 51.471 68 33 0 10 77 3 70 7.56e-19 77.0
MsaG003580 AT4G24540.1 51.471 68 33 0 9 76 2 69 1.33e-18 77.8
MsaG003580 AT4G22950.2 45.455 77 42 0 10 86 3 79 1.42e-18 76.6
MsaG003580 AT2G45660.1 51.471 68 33 0 10 77 3 70 2.18e-18 77.0
MsaG003580 AT4G18960.1 43.810 105 54 2 2 101 11 115 3.92e-18 77.4
MsaG003580 AT5G51870.5 51.389 72 35 0 5 76 21 92 5.21e-18 75.9
MsaG003580 AT5G51860.2 39.604 101 61 0 10 110 3 103 8.09e-18 75.5
MsaG003580 AT4G22950.3 47.887 71 37 0 10 80 3 73 8.20e-18 75.9
MsaG003580 AT4G22950.1 47.887 71 37 0 10 80 3 73 8.20e-18 75.9
MsaG003580 AT5G51860.1 39.604 101 61 0 10 110 3 103 1.01e-17 75.5
MsaG003580 AT5G51870.2 53.731 67 31 0 10 76 3 69 1.05e-17 74.3
MsaG003580 AT5G51870.1 53.731 67 31 0 10 76 3 69 1.31e-17 75.1
MsaG003580 AT5G13790.1 52.941 68 32 0 9 76 2 69 1.40e-17 75.9
MsaG003580 AT5G13790.2 52.941 68 32 0 9 76 2 69 1.44e-17 75.9
MsaG003580 AT5G62165.14 50.746 67 33 0 10 76 3 69 1.81e-17 72.4
MsaG003580 AT5G51870.4 53.731 67 31 0 10 76 3 69 2.10e-17 74.7
MsaG003580 AT5G62165.17 50.746 67 33 0 10 76 3 69 2.16e-17 73.2
MsaG003580 AT5G62165.12 50.746 67 33 0 10 76 3 69 2.16e-17 73.2
MsaG003580 AT5G62165.11 50.746 67 33 0 10 76 3 69 2.16e-17 73.2
MsaG003580 AT5G51870.3 53.731 67 31 0 10 76 13 79 2.54e-17 74.7
MsaG003580 AT3G57230.2 47.059 68 36 0 9 76 2 69 2.67e-17 72.8
MsaG003580 AT5G62165.6 50.746 67 33 0 10 76 3 69 3.10e-17 72.8
MsaG003580 AT5G62165.9 50.746 67 33 0 10 76 3 69 3.10e-17 72.8
MsaG003580 AT5G62165.7 50.746 67 33 0 10 76 3 69 3.10e-17 72.8
MsaG003580 AT5G62165.8 50.746 67 33 0 10 76 3 69 3.10e-17 72.8
MsaG003580 AT5G62165.13 50.746 67 33 0 10 76 3 69 3.10e-17 72.8
MsaG003580 AT3G57390.3 50.000 68 34 0 9 76 2 69 3.17e-17 74.3
MsaG003580 AT1G77980.1 50.704 71 34 1 9 78 2 72 3.85e-17 75.5
MsaG003580 AT3G57390.1 50.000 68 34 0 9 76 2 69 5.32e-17 74.3
MsaG003580 AT2G22540.3 50.746 67 33 0 10 76 3 69 5.38e-17 73.9
MsaG003580 AT2G22540.1 50.746 67 33 0 10 76 3 69 5.38e-17 73.9
MsaG003580 AT5G62165.10 50.746 67 33 0 10 76 3 69 7.16e-17 72.8
MsaG003580 AT5G62165.4 50.746 67 33 0 10 76 3 69 7.16e-17 72.8
MsaG003580 AT5G62165.3 50.746 67 33 0 10 76 3 69 7.81e-17 73.2
MsaG003580 AT5G62165.1 50.746 67 33 0 10 76 3 69 7.81e-17 73.2
MsaG003580 AT5G62165.2 50.746 67 33 0 10 76 3 69 7.81e-17 73.2
MsaG003580 AT5G10140.2 49.275 69 34 1 9 76 2 70 8.58e-17 72.0
MsaG003580 AT2G42830.1 48.529 68 35 0 9 76 17 84 9.36e-17 73.6
MsaG003580 AT1G22130.1 50.704 71 34 1 9 78 2 72 9.65e-17 74.3
MsaG003580 AT2G42830.2 48.529 68 35 0 9 76 17 84 9.92e-17 73.6
MsaG003580 AT3G54340.1 50.794 63 31 0 9 71 2 64 1.09e-16 73.2
MsaG003580 AT3G58780.1 47.887 71 37 0 6 76 14 84 1.27e-16 73.2
MsaG003580 AT5G10140.3 49.275 69 34 1 9 76 2 70 1.31e-16 72.0
MsaG003580 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.31e-16 73.2
MsaG003580 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.31e-16 73.2
MsaG003580 AT1G28460.1 38.776 98 60 0 5 102 4 101 1.42e-16 71.6
MsaG003580 AT5G10140.4 49.275 69 34 1 9 76 2 70 1.43e-16 71.6
MsaG003580 AT3G58780.5 47.887 71 37 0 6 76 20 90 1.43e-16 73.2
MsaG003580 AT5G10140.1 49.275 69 34 1 9 76 2 70 1.62e-16 72.0
MsaG003580 AT1G17310.1 55.405 74 31 1 8 81 47 118 1.85e-16 72.0
MsaG003580 AT1G77950.3 44.737 76 40 2 9 83 2 76 2.38e-16 72.4
MsaG003580 AT1G77950.2 44.737 76 40 2 9 83 2 76 2.38e-16 72.4
MsaG003580 AT1G77950.1 44.737 76 40 2 9 83 2 76 2.38e-16 72.4
MsaG003580 AT1G77950.4 44.737 76 40 2 9 83 2 76 2.38e-16 72.4
MsaG003580 AT3G58780.4 47.887 71 37 0 6 76 14 84 2.42e-16 72.8
MsaG003580 AT1G17310.2 53.165 79 35 1 8 86 58 134 2.57e-16 72.0
MsaG003580 AT4G37940.1 47.059 68 36 0 9 76 2 69 2.62e-16 72.0
MsaG003580 AT4G37940.4 47.059 68 36 0 9 76 2 69 2.78e-16 71.6
MsaG003580 AT3G61120.1 50.000 68 34 0 9 76 2 69 2.81e-16 72.0
MsaG003580 AT4G37940.3 47.059 68 36 0 9 76 2 69 3.33e-16 70.9
MsaG003580 AT5G23260.4 50.667 75 35 1 5 77 14 88 3.64e-16 72.4
MsaG003580 AT5G23260.1 50.667 75 35 1 5 77 14 88 3.86e-16 72.0
MsaG003580 AT2G22630.1 47.059 68 36 0 9 76 2 69 5.26e-16 71.2
MsaG003580 AT2G22630.2 47.059 68 36 0 9 76 2 69 5.26e-16 71.2
MsaG003580 AT3G30260.1 35.577 104 60 2 9 105 2 105 5.58e-16 71.6
MsaG003580 AT1G26310.1 37.615 109 54 2 9 103 2 110 6.95e-16 71.2
MsaG003580 AT4G11880.2 47.222 72 37 1 10 80 3 74 7.67e-16 69.7
MsaG003580 AT4G11880.3 47.222 72 37 1 10 80 3 74 7.67e-16 69.7
MsaG003580 AT1G29962.1 43.243 74 42 0 5 78 4 77 8.76e-16 69.7
MsaG003580 AT5G60910.1 47.826 69 35 1 9 76 2 70 9.14e-16 70.9
MsaG003580 AT5G20240.2 47.887 71 35 1 9 79 2 70 9.90e-16 68.9
MsaG003580 AT4G11880.4 47.222 72 37 1 10 80 3 74 1.34e-15 70.1
MsaG003580 AT4G11880.1 47.222 72 37 1 10 80 3 74 1.34e-15 70.1
MsaG003580 AT5G23260.2 52.113 71 32 1 9 77 2 72 1.57e-15 70.5
MsaG003580 AT5G23260.3 52.113 71 32 1 9 77 2 72 1.93e-15 69.7
MsaG003580 AT5G20240.1 47.887 71 35 1 9 79 2 70 2.37e-15 68.9
MsaG003580 AT2G22540.2 56.364 55 24 0 10 64 3 57 2.62e-15 69.3
MsaG003580 AT2G03710.3 55.357 56 25 0 9 64 2 57 2.68e-15 68.6
MsaG003580 AT2G14210.1 46.377 69 36 1 9 76 2 70 3.15e-15 69.3
MsaG003580 AT1G69120.2 44.928 69 37 1 9 76 2 70 3.18e-15 69.3
MsaG003580 AT2G14210.2 46.377 69 36 1 9 76 2 70 3.77e-15 68.9
MsaG003580 AT5G65050.2 47.826 69 35 1 9 76 2 70 3.86e-15 68.2
MsaG003580 AT1G47760.1 37.864 103 50 2 9 111 2 90 4.89e-15 67.8
MsaG003580 AT1G69120.1 44.928 69 37 1 9 76 2 70 6.96e-15 68.6
MsaG003580 AT5G15800.1 47.826 69 35 1 9 76 2 70 7.37e-15 68.6
MsaG003580 AT2G03710.2 55.357 56 25 0 9 64 2 57 7.72e-15 68.6
MsaG003580 AT2G03710.1 55.357 56 25 0 9 64 2 57 8.30e-15 68.6
MsaG003580 AT5G65050.3 47.826 69 35 1 9 76 2 70 1.04e-14 67.4
MsaG003580 AT5G65050.5 47.826 69 35 1 9 76 2 70 1.10e-14 67.0
MsaG003580 AT5G65050.1 47.826 69 35 1 9 76 2 70 1.12e-14 67.0
MsaG003580 AT5G15800.2 47.826 69 35 1 9 76 2 70 1.19e-14 68.2
MsaG003580 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.30e-14 67.0
MsaG003580 AT3G58780.2 49.180 61 31 0 6 66 14 74 1.53e-14 67.4
MsaG003580 AT1G24260.3 53.571 56 26 0 9 64 2 57 1.70e-14 67.4
MsaG003580 AT1G24260.2 53.571 56 26 0 9 64 2 57 1.72e-14 67.4
MsaG003580 AT1G24260.1 53.571 56 26 0 9 64 2 57 1.73e-14 67.4
MsaG003580 AT3G58780.3 49.180 61 31 0 6 66 14 74 2.20e-14 67.4
MsaG003580 AT3G02310.1 53.571 56 26 0 9 64 2 57 2.70e-14 67.0
MsaG003580 AT5G65070.4 42.029 69 39 1 9 76 2 70 3.35e-14 64.7
MsaG003580 AT5G65060.3 46.377 69 36 1 9 76 2 70 4.46e-14 65.5
MsaG003580 AT5G65060.2 46.377 69 36 1 9 76 2 70 5.78e-14 65.1
MsaG003580 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.90e-14 65.5
MsaG003580 AT5G65060.1 46.377 69 36 1 9 76 2 70 5.91e-14 65.1
MsaG003580 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.38e-13 64.7
MsaG003580 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.79e-13 64.3
MsaG003580 AT1G46408.1 46.753 77 37 2 10 82 5 81 2.39e-13 64.7
MsaG003580 AT5G49420.1 38.298 94 51 2 5 91 3 96 2.97e-13 64.7
MsaG003580 AT1G71692.1 43.478 69 38 1 10 77 3 71 3.12e-13 63.5
MsaG003580 AT5G65070.3 47.368 57 30 0 9 65 2 58 6.99e-13 62.8
MsaG003580 AT1G28450.1 39.189 74 45 0 5 78 4 77 8.74e-13 62.0
MsaG003580 AT1G18750.4 40.260 77 43 2 9 83 2 77 1.10e-12 63.2
MsaG003580 AT1G18750.3 40.260 77 43 2 9 83 2 77 1.11e-12 63.5
MsaG003580 AT1G18750.1 40.260 77 43 2 9 83 2 77 1.33e-12 63.2
MsaG003580 AT4G37435.1 40.278 72 42 1 9 79 2 73 1.50e-12 61.2
MsaG003580 AT5G49490.1 41.026 78 42 1 5 78 41 118 1.65e-12 62.4
MsaG003580 AT5G65080.3 40.580 69 40 1 9 76 9 77 3.74e-12 60.5
MsaG003580 AT5G38620.1 41.096 73 39 1 10 78 6 78 4.75e-12 61.6
MsaG003580 AT1G60920.1 42.308 78 40 2 10 82 5 82 7.00e-12 59.7
MsaG003580 AT5G65080.2 43.860 57 32 0 6 62 6 62 8.78e-12 59.7
MsaG003580 AT2G26320.1 40.541 74 42 1 5 76 14 87 1.23e-11 57.4
MsaG003580 AT1G31140.2 31.313 99 66 1 15 111 8 106 2.27e-11 58.5
MsaG003580 AT2G03060.2 39.286 84 48 2 9 90 2 84 3.67e-11 58.9
MsaG003580 AT2G03060.3 39.286 84 48 2 9 90 2 84 4.57e-11 58.5
MsaG003580 AT2G03060.7 39.286 84 48 2 9 90 2 84 4.57e-11 58.5
MsaG003580 AT2G03060.1 39.286 84 48 2 9 90 2 84 4.57e-11 58.5

Find 17 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTAAGCTCGCGCAATT+TGG 0.260952 1:-59171396 None:intergenic
AGCGAGCTTTGCGCCCTTTG+TGG 0.324077 1:+59171224 MsaT003580.1:CDS
CCTATGACTGTATCAACATT+TGG 0.327027 1:-59171305 None:intergenic
CTATGACTGTATCAACATTT+GGG 0.424254 1:-59171304 None:intergenic
CCAAATGTTGATACAGTCAT+AGG 0.480475 1:+59171305 MsaT003580.1:CDS
AGCAATATATGCACCACAAA+GGG 0.506733 1:-59171237 None:intergenic
CATAGGTCGCTATCTCTCTC+AGG 0.517223 1:+59171322 MsaT003580.1:CDS
GCTCGCTAGCTTTCTTGAAG+AGG 0.540970 1:-59171208 None:intergenic
AATGAAAACACCTTCTCACT+AGG 0.561050 1:-59171275 None:intergenic
TGGCACCATGCAATTCATTG+AGG 0.607542 1:+59171361 MsaT003580.1:CDS
TGTATTCTCACCTAGTGAGA+AGG 0.608755 1:+59171265 MsaT003580.1:CDS
ATAAGCCTCAATGAATTGCA+TGG 0.632939 1:-59171366 None:intergenic
ACTTTCTCGAAGCGTCGTAG+TGG 0.635248 1:+59171185 MsaT003580.1:CDS
GAGCAATATATGCACCACAA+AGG 0.637348 1:-59171238 None:intergenic
TCGAGCGGAAAGAAAAGTCA+AGG 0.637604 1:+59171110 MsaT003580.1:CDS
TGTGCTTCAATCATGTCGAG+CGG 0.661849 1:+59171095 None:intergenic
CAGGTACCACCTCAAAACAA+TGG 0.668018 1:+59171341 MsaT003580.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 59171107 59171460 59171107 ID=MsaG003580
Chr1 mRNA 59171107 59171460 59171107 ID=MsaT003580.1;Parent=MsaG003580
Chr1 exon 59171107 59171460 59171107 ID=MsaT003580.1.exon1;Parent=MsaT003580.1
Chr1 CDS 59171107 59171460 59171107 ID=cds.MsaT003580.1;Parent=MsaT003580.1
Gene Sequence

>MsaT003580.1

ATGTCGAGCGGAAAGAAAAGTCAAGGTCGCCAAAAAATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGCCTCTTCAAGAAAGCTAGCGAGCTTTGCGCCCTTTGTGGTGCATATATTGCTCTCATTGTATTCTCACCTAGTGAGAAGGTGTTTTCATTTGGTCACCCAAATGTTGATACAGTCATAGGTCGCTATCTCTCTCAGGTACCACCTCAAAACAATGGCACCATGCAATTCATTGAGGCTTATTGTAGCGCCAAATTGCGCGAGCTTAATGCTATGCTGACTCAAATCAATGATGCACATCGAAAAGAAGCGTGA
Protein sequence

>MsaT003580.1

MSSGKKSQGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCALCGAYIALIVFSPSEKVFSFGHPNVDTVIGRYLSQVPPQNNGTMQFIEAYCSAKLRELNAMLTQINDAHRKEA*