AlfalfaGEDB | MsaG003581

M. sativa ssp. caerulea / MsaG003581

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003581	XP_003590822.1	91.561	237	20	0	1	237	1	237	3.65e-150	427

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003581	sp\|Q9FKK2\|AGL62_ARATH	47.895	190	90	4	5	190	3	187	4.76e-48	163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003581	tr\|G7I4T7\|G7I4T7_MEDTR	91.561	237	20	0	1	237	1	237	1.74e-150	427

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003581	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000004	MsaG003581	0.839940	2.166662e-57	8.442317e-55
MsaG003581	MsaG000634	0.816059	1.165690e-51	2.314611e-49
MsaG003581	MsaG003540	0.822092	5.015987e-53	1.166099e-50
MsaG003581	MsaG010137	0.819707	1.764125e-52	3.849796e-50
MsaG003581	MsaG022828	0.811249	1.318822e-50	2.321942e-48
MsaG003581	MsaG032525	0.838220	6.014216e-57	2.220846e-54
MsaG003581	MsaG033360	0.837053	1.194841e-56	4.257089e-54
MsaG003581	MsaG031949	0.815015	1.985287e-51	3.839217e-49
MsaG003581	MsaG038782	0.802950	7.398319e-49	1.069599e-46
MsaG003846	MsaG003581	0.803954	4.592167e-49	6.795168e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003581	MtrunA17_Chr1g0187361	91.561	237	20	1	237	1	237	3.36e-154	427
MsaG003581	MtrunA17_Chr1g0188671	86.667	225	30	1	225	39	263	5.85e-144	403
MsaG003581	MtrunA17_Chr5g0422941	70.042	237	71	1	237	1	237	1.00e-121	345
MsaG003581	MtrunA17_Chr2g0317451	68.644	236	74	1	236	1	236	1.48e-116	332
MsaG003581	MtrunA17_Chr2g0317481	68.644	236	74	1	236	1	236	4.62e-116	331
MsaG003581	MtrunA17_Chr8g0355091	66.667	237	79	1	237	1	237	4.97e-115	328
MsaG003581	MtrunA17_Chr1g0149391	68.776	237	74	1	237	1	237	4.11e-111	318
MsaG003581	MtrunA17_Chr1g0206721	69.863	219	66	1	219	1	219	1.07e-110	317
MsaG003581	MtrunA17_Chr2g0292791	69.198	237	73	1	237	1	237	1.71e-110	317
MsaG003581	MtrunA17_Chr5g0422421	68.889	225	70	1	225	1	225	1.37e-109	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003581	AT5G60440.1	47.895	190	90	4	5	190	3	187	4.84e-49	163
MsaG003581	AT1G01530.1	42.632	190	101	3	4	192	2	184	7.02e-42	143
MsaG003581	AT4G36590.1	40.426	235	119	8	5	226	3	229	2.25e-38	134
MsaG003581	AT1G65360.1	38.793	232	113	9	5	223	3	218	9.39e-38	132
MsaG003581	AT2G24840.1	46.626	163	80	3	9	167	63	222	3.72e-37	131
MsaG003581	AT3G04100.1	29.545	176	108	3	2	167	7	176	5.18e-25	98.2
MsaG003581	AT1G72350.1	34.483	174	80	5	9	182	43	182	1.70e-22	92.0
MsaG003581	AT2G34440.1	41.441	111	64	1	9	119	2	111	1.53e-21	88.2
MsaG003581	AT3G66656.1	36.975	119	71	1	9	123	2	120	4.17e-19	82.0
MsaG003581	AT1G29962.1	28.000	175	120	3	5	173	4	178	1.02e-18	81.3

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Find 54 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAATTGCAGAACATGT+TGG	0.599135	1:+59192844	MsaT003581.1:CDS
AACAAATGAGGTTGCAACAT+AGG	0.496587	1:-59193003	None:intergenic
AACAATATAGGAGGAGATGG+TGG	0.621356	1:+59193033	MsaT003581.1:CDS
AAGCTTCTTGATGATTTGGC+TGG	0.457989	1:-59192951	None:intergenic
AATGAAAACACCTTATCACT+AGG	0.625532	1:-59192535	None:intergenic
AATTGCAGAACATGTTGGTA+TGG	0.601458	1:+59192849	MsaT003581.1:CDS
ACAAATGAGGTTGCAACATA+GGG	0.527904	1:-59193002	None:intergenic
ACCTTATCCATCCCTTCAAT+GGG	0.468641	1:-59192781	None:intergenic
ACTCAAATCAACGATGCACT+AGG	0.586796	1:+59192685	MsaT003581.1:CDS
ACTTTCTCGAAGCGTCGTAG+TGG	0.570157	1:+59192445	MsaT003581.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	59192367	59193080	59192367	ID=MsaG003581
Chr1	mRNA	59192367	59193080	59192367	ID=MsaT003581.1;Parent=MsaG003581
Chr1	exon	59192367	59193080	59192367	ID=MsaT003581.1.exon1;Parent=MsaT003581.1
Chr1	CDS	59192367	59193080	59192367	ID=cds.MsaT003581.1;Parent=MsaT003581.1

Gene Sequence

>MsaT003581.1

ATGTCGAGTGGAAAGAAAGGTCAAGGTCGCAAAAAAATTGAGATGAAAAAAATGAGCAATGAGAGCAATTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGACTCTTCAAGAAAGCGAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTCATTGTATTCTCACCTAGTGATAAGGTGTTTTCATTTGGCTACCCAGATGTTTATACGGTCATAGACCATTATCTCTCTCAGGTCCCACTCCAAAACAATGGGATCTTGCAATTCATTGAGGCTCACCGCAGCGCCAAATTGCGCGAGCTTAATGCTATGTTAACTCAAATCAACGATGCACTAGGCATCGAAAAGAAGCGCAAGAATGAGCTGATCGATTTATGCAAGAAGAATGAGGCTCAGTTTTGGTGGGCTTGTCCCATTGAAGGGATGGATAAGGTCCAACTTCAATTATTGAAAAATGCTTTGTTGGATCTTAAGAAACGAATTGCAGAACATGTTGGTATGGTTGTAAGTCAGGGGACTCCTACCCAAACCCTTCCGTTTTTTGTTGGCAATGGTTCGTCCTCTACCATGCCTATCGAGCACCAGCCAAATCATCAAGAAGCTTCAATTTTCCCGCCTGGATTTTGTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATAGGAGGAGATGGTGGACATGGTCCCTCTGGATTCTATTGA

Protein sequence

>MsaT003581.1

MSSGKKGQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIVFSPSDKVFSFGYPDVYTVIDHYLSQVPLQNNGILQFIEAHRSAKLRELNAMLTQINDALGIEKKRKNELIDLCKKNEAQFWWACPIEGMDKVQLQLLKNALLDLKKRIAEHVGMVVSQGTPTQTLPFFVGNGSSSTMPIEHQPNHQEASIFPPGFCQNPMLQPHLFGFNNIGGDGGHGPSGFY*