AlfalfaGEDB | MsaG003601

M. sativa ssp. caerulea / MsaG003601

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003601	AES88847.1	59.890	182	70	2	1	179	1	182	1.74e-61	199

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003601	tr\|G7JTS8\|G7JTS8_MEDTR	59.890	182	70	2	1	179	1	182	8.31e-62	199

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG003601	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003601	MtrunA17_Chr4g0031161	59.890	182	70	2	1	179	1	182	1.60e-65	199
MsaG003601	MtrunA17_Chr1g0187701	51.667	180	58	6	2	179	4	156	1.70e-46	150
MsaG003601	MtrunA17_Chr1g0187511	34.104	173	73	5	13	179	8	145	2.99e-20	82.0
MsaG003601	MtrunA17_Chr1g0187541	33.136	169	78	5	13	179	11	146	2.73e-17	74.3

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTACTATTGGAAAATT+TGG	0.112651	1:-59391137	None:intergenic
AACCTCTCATGTCATCTTTG+GGG	0.617848	1:+59391288	MsaT003601.1:CDS
AACTTGGCTGCAAAATGTGC+AGG	0.547777	1:-59391006	None:intergenic
AATTGGTGGAGCTACAAATG+AGG	0.628180	1:-59391336	None:intergenic
ACAAACACATTGTTATCGAT+TGG	0.463185	1:-59391431	None:intergenic
ACAACCTCTCATGTCATCTT+TGG	0.248681	1:+59391286	MsaT003601.1:CDS
AGCAACCACCACAACAACCT+TGG	0.526275	1:+59391204	MsaT003601.1:CDS
AGCGAAATGAGACTGAAAAT+GGG	0.587414	1:-59391054	None:intergenic
AGGCAAAATAAGGCTGGTTG+AGG	0.574955	1:-59390986	None:intergenic
ATCAACCAAGGTTGTTGTGG+TGG	0.645799	1:-59391209	None:intergenic

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	59390966	59391505	59390966	ID=MsaG003601
Chr1	mRNA	59390966	59391505	59390966	ID=MsaT003601.1;Parent=MsaG003601
Chr1	exon	59390966	59391505	59390966	ID=MsaT003601.1.exon1;Parent=MsaT003601.1
Chr1	CDS	59390966	59391505	59390966	ID=cds.MsaT003601.1;Parent=MsaT003601.1

Gene Sequence

>MsaT003601.1

ATGGCCGCCATGTTTTTCATCCTCAACCAGCCTTATTTTGCCTGCACATTTTGCAGCCAAGTTTTCACCAACTACCAATTAATGACAACCCATTTTCAGTCTCATTTCGCTCAAGAAAACCTTATCATGAGAAGTCTTTACCAGATTAACTCTCAAAGAGTACTTTTGCAACCAAATTTTCCAATAGTAATGTTGATGGAGGGAACTTATGGAAGTTTTGGTGGAAATATAGTTTTTCAGCAACCACCACAACAACCTTGGTTGATGTCTCAACCAATAACAAATCAATTCTTGCATACTAACATGCAAGTTGTTGCTTCACAACCTCTCATGTCATCTTTGGGGAACAATGTTAATGCTAATAACGTGACCTCATTTGTAGCTCCACCAATTTCTAGAGAAAATGCTGCCATAGAGGTGTCTCCAACCGATAAAACTAAGATATATATAGACCAACTGGATAAACCAATCGATAACAATGTGTTTGTCAATTCTGCTGATATCAATGATGACTCATTGAATCTGCAGTTAGAACTCTAG

Protein sequence

>MsaT003601.1

MAAMFFILNQPYFACTFCSQVFTNYQLMTTHFQSHFAQENLIMRSLYQINSQRVLLQPNFPIVMLMEGTYGSFGGNIVFQQPPQQPWLMSQPITNQFLHTNMQVVASQPLMSSLGNNVNANNVTSFVAPPISRENAAIEVSPTDKTKIYIDQLDKPIDNNVFVNSADINDDSLNLQLEL*