Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003607 | XP_003590848.2 | 98.922 | 464 | 5 | 0 | 1 | 464 | 1 | 464 | 0.0 | 945 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003607 | sp|Q9LW62|CKL10_ARATH | 75.862 | 464 | 89 | 6 | 2 | 464 | 1 | 442 | 0.0 | 713 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003607 | tr|G7I4W3|G7I4W3_MEDTR | 98.922 | 464 | 5 | 0 | 1 | 464 | 1 | 464 | 0.0 | 945 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003607 | MtrunA17_Chr1g0187571 | 98.922 | 464 | 5 | 0 | 1 | 464 | 1 | 464 | 0.0 | 945 |
MsaG003607 | MtrunA17_Chr1g0166821 | 86.452 | 465 | 55 | 3 | 1 | 464 | 1 | 458 | 0.0 | 768 |
MsaG003607 | MtrunA17_Chr7g0261501 | 76.840 | 462 | 101 | 5 | 2 | 458 | 1 | 461 | 0.0 | 703 |
MsaG003607 | MtrunA17_Chr1g0183631 | 72.451 | 461 | 114 | 8 | 2 | 458 | 1 | 452 | 0.0 | 671 |
MsaG003607 | MtrunA17_Chr2g0329981 | 60.421 | 475 | 171 | 7 | 2 | 462 | 1 | 472 | 0.0 | 545 |
MsaG003607 | MtrunA17_Chr8g0342821 | 59.916 | 479 | 158 | 9 | 2 | 458 | 1 | 467 | 0.0 | 536 |
MsaG003607 | MtrunA17_Chr4g0071031 | 77.143 | 315 | 68 | 2 | 2 | 316 | 1 | 311 | 0.0 | 531 |
MsaG003607 | MtrunA17_Chr1g0167261 | 71.545 | 369 | 73 | 4 | 1 | 366 | 1 | 340 | 0.0 | 524 |
MsaG003607 | MtrunA17_Chr8g0390211 | 59.954 | 432 | 150 | 7 | 2 | 423 | 1 | 419 | 1.31e-179 | 509 |
MsaG003607 | MtrunA17_Chr6g0486611 | 60.373 | 429 | 148 | 8 | 2 | 420 | 1 | 417 | 2.72e-179 | 508 |
MsaG003607 | MtrunA17_Chr2g0299661 | 59.712 | 417 | 149 | 7 | 2 | 417 | 1 | 399 | 1.41e-173 | 495 |
MsaG003607 | MtrunA17_Chr1g0146151 | 66.242 | 314 | 106 | 0 | 2 | 315 | 1 | 314 | 1.09e-160 | 461 |
MsaG003607 | MtrunA17_Chr3g0140071 | 54.005 | 437 | 178 | 5 | 2 | 422 | 1 | 430 | 8.31e-160 | 459 |
MsaG003607 | MtrunA17_Chr7g0214531 | 39.100 | 289 | 157 | 6 | 6 | 278 | 31 | 316 | 1.66e-58 | 202 |
MsaG003607 | MtrunA17_Chr3g0140431 | 39.068 | 279 | 157 | 6 | 6 | 274 | 32 | 307 | 3.25e-56 | 196 |
MsaG003607 | MtrunA17_Chr1g0146301 | 37.993 | 279 | 160 | 6 | 6 | 274 | 118 | 393 | 2.92e-55 | 195 |
MsaG003607 | MtrunA17_Chr1g0213321 | 37.676 | 284 | 163 | 6 | 6 | 278 | 113 | 393 | 1.35e-54 | 193 |
MsaG003607 | MtrunA17_Chr7g0253211 | 37.943 | 282 | 159 | 5 | 10 | 278 | 324 | 602 | 2.45e-53 | 192 |
MsaG003607 | MtrunA17_Chr8g0340491 | 36.879 | 282 | 156 | 6 | 10 | 274 | 128 | 404 | 8.76e-50 | 180 |
MsaG003607 | MtrunA17_Chr5g0405421 | 25.455 | 220 | 147 | 6 | 9 | 220 | 98 | 308 | 4.85e-13 | 71.2 |
MsaG003607 | MtrunA17_Chr7g0245031 | 32.857 | 140 | 80 | 4 | 108 | 247 | 250 | 375 | 2.19e-12 | 68.9 |
MsaG003607 | MtrunA17_Chr4g0072831 | 30.065 | 153 | 75 | 5 | 8 | 154 | 8 | 134 | 8.75e-12 | 66.2 |
MsaG003607 | MtrunA17_Chr7g0267751 | 27.189 | 217 | 134 | 9 | 10 | 216 | 135 | 337 | 2.07e-11 | 66.2 |
MsaG003607 | MtrunA17_Chr4g0075541 | 26.241 | 282 | 178 | 10 | 12 | 282 | 89 | 351 | 2.50e-11 | 65.1 |
MsaG003607 | MtrunA17_Chr7g0267771 | 27.064 | 218 | 133 | 7 | 10 | 216 | 88 | 290 | 2.52e-11 | 65.5 |
MsaG003607 | MtrunA17_Chr1g0203881 | 24.809 | 262 | 167 | 8 | 9 | 251 | 40 | 290 | 3.01e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003607 | AT3G23340.1 | 75.862 | 464 | 89 | 6 | 2 | 464 | 1 | 442 | 0.0 | 713 |
MsaG003607 | AT4G14340.1 | 74.249 | 466 | 101 | 5 | 2 | 464 | 7 | 456 | 0.0 | 710 |
MsaG003607 | AT4G28540.1 | 73.950 | 476 | 102 | 9 | 2 | 458 | 5 | 477 | 0.0 | 687 |
MsaG003607 | AT5G43320.1 | 71.933 | 481 | 116 | 8 | 2 | 464 | 1 | 480 | 0.0 | 686 |
MsaG003607 | AT3G23340.2 | 73.276 | 464 | 87 | 7 | 2 | 464 | 1 | 428 | 0.0 | 679 |
MsaG003607 | AT1G04440.1 | 71.338 | 471 | 124 | 7 | 2 | 464 | 1 | 468 | 0.0 | 664 |
MsaG003607 | AT1G03930.1 | 73.093 | 472 | 109 | 4 | 2 | 458 | 1 | 469 | 0.0 | 657 |
MsaG003607 | AT5G44100.1 | 72.479 | 476 | 110 | 6 | 2 | 458 | 1 | 474 | 0.0 | 628 |
MsaG003607 | AT5G44100.2 | 72.479 | 476 | 110 | 6 | 2 | 458 | 1 | 474 | 0.0 | 628 |
MsaG003607 | AT4G14340.2 | 84.404 | 327 | 50 | 1 | 2 | 327 | 7 | 333 | 0.0 | 597 |
MsaG003607 | AT5G43320.2 | 80.655 | 336 | 54 | 2 | 2 | 329 | 1 | 333 | 0.0 | 567 |
MsaG003607 | AT5G43320.3 | 80.655 | 336 | 54 | 2 | 2 | 329 | 1 | 333 | 0.0 | 567 |
MsaG003607 | AT1G72710.1 | 69.474 | 380 | 106 | 4 | 2 | 374 | 1 | 377 | 0.0 | 544 |
MsaG003607 | AT4G26100.1 | 63.158 | 437 | 146 | 9 | 2 | 433 | 1 | 427 | 0.0 | 532 |
MsaG003607 | AT5G57015.1 | 72.619 | 336 | 87 | 3 | 2 | 337 | 1 | 331 | 0.0 | 521 |
MsaG003607 | AT2G19470.1 | 74.839 | 310 | 75 | 1 | 2 | 311 | 1 | 307 | 0.0 | 517 |
MsaG003607 | AT4G28880.3 | 60.386 | 414 | 139 | 6 | 2 | 395 | 1 | 409 | 2.60e-176 | 500 |
MsaG003607 | AT4G28880.2 | 60.386 | 414 | 139 | 6 | 2 | 395 | 1 | 409 | 2.60e-176 | 500 |
MsaG003607 | AT4G28880.1 | 60.386 | 414 | 139 | 6 | 2 | 395 | 1 | 409 | 2.60e-176 | 500 |
MsaG003607 | AT4G28880.4 | 60.386 | 414 | 139 | 6 | 2 | 395 | 1 | 409 | 2.60e-176 | 500 |
MsaG003607 | AT4G28860.2 | 70.717 | 321 | 89 | 2 | 2 | 322 | 1 | 316 | 6.79e-175 | 495 |
MsaG003607 | AT4G28860.1 | 70.717 | 321 | 89 | 2 | 2 | 322 | 1 | 316 | 3.41e-174 | 495 |
MsaG003607 | AT4G08800.1 | 64.430 | 298 | 74 | 2 | 2 | 299 | 1 | 266 | 2.86e-143 | 411 |
MsaG003607 | AT2G25760.2 | 40.000 | 280 | 153 | 4 | 10 | 274 | 107 | 386 | 4.02e-60 | 209 |
MsaG003607 | AT2G25760.1 | 39.643 | 280 | 151 | 5 | 10 | 274 | 107 | 383 | 2.14e-57 | 201 |
MsaG003607 | AT3G13670.1 | 36.678 | 289 | 164 | 6 | 6 | 278 | 131 | 416 | 2.17e-54 | 193 |
MsaG003607 | AT5G18190.2 | 37.234 | 282 | 161 | 5 | 10 | 278 | 130 | 408 | 4.54e-54 | 192 |
MsaG003607 | AT5G18190.1 | 37.234 | 282 | 161 | 5 | 10 | 278 | 130 | 408 | 4.54e-54 | 192 |
MsaG003607 | AT3G03940.1 | 37.234 | 282 | 161 | 5 | 10 | 278 | 140 | 418 | 4.79e-54 | 192 |
MsaG003607 | AT3G06030.1 | 25.926 | 216 | 141 | 5 | 9 | 214 | 67 | 273 | 1.20e-12 | 70.5 |
MsaG003607 | AT2G38910.1 | 26.667 | 285 | 156 | 10 | 2 | 246 | 119 | 390 | 3.86e-12 | 68.9 |
MsaG003607 | AT3G50530.1 | 26.872 | 227 | 143 | 7 | 6 | 220 | 144 | 359 | 4.05e-12 | 68.9 |
MsaG003607 | AT1G09000.1 | 25.581 | 215 | 141 | 4 | 10 | 214 | 69 | 274 | 3.69e-11 | 65.9 |
MsaG003607 | AT5G39440.1 | 27.354 | 223 | 147 | 6 | 10 | 228 | 19 | 230 | 3.77e-11 | 65.5 |
MsaG003607 | AT2G17890.1 | 23.423 | 222 | 149 | 7 | 9 | 220 | 107 | 317 | 4.26e-11 | 65.5 |
MsaG003607 | AT1G09000.2 | 25.581 | 215 | 141 | 4 | 10 | 214 | 69 | 274 | 8.40e-11 | 64.7 |
MsaG003607 | AT1G30270.1 | 28.049 | 246 | 139 | 12 | 8 | 237 | 29 | 252 | 8.74e-11 | 64.3 |
Find 122 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATTTAATAATCGTGCTTC+TGG | 0.214021 | 1:-59448285 | MsaT003607.1:CDS |
TTCAAGCTTGGAAGGAAAAT+TGG | 0.240956 | 1:-59453936 | MsaT003607.1:CDS |
TGTCACTTGGCACTGGAAAA+AGG | 0.247125 | 1:-59448218 | MsaT003607.1:CDS |
GCTAGATAAGACAGGTCTTT+TGG | 0.256276 | 1:+59448425 | None:intergenic |
CGGGTATTCCCCATTTAAAA+TGG | 0.292102 | 1:-59452544 | MsaT003607.1:CDS |
ATTATTAAATGATGATGATT+TGG | 0.313853 | 1:+59448296 | None:intergenic |
GTGATGATGGATCATGTAAT+TGG | 0.322381 | 1:-59453966 | MsaT003607.1:CDS |
CTTGGTTCACCAGAAGAGTT+TGG | 0.328063 | 1:+59448396 | None:intergenic |
CACAAATTGGATCTAGTTCC+AGG | 0.331261 | 1:-59449175 | MsaT003607.1:CDS |
AAAATTGGTGGTGGGTCATT+TGG | 0.338722 | 1:-59453921 | MsaT003607.1:CDS |
AGAGGAAGTTGCTCTTAAAT+TGG | 0.345528 | 1:-59453761 | MsaT003607.1:intron |
TTTAACCTTCTCGGATGAAT+AGG | 0.346286 | 1:+59449311 | None:intergenic |
AGCAGCCGTCCAAACTCTTC+TGG | 0.358357 | 1:-59448405 | MsaT003607.1:CDS |
TAGATTCTCGGGTGCAGTTC+AGG | 0.359219 | 1:-59448688 | MsaT003607.1:CDS |
ATTCCCCATTTAAAATGGTT+TGG | 0.360672 | 1:-59452539 | MsaT003607.1:CDS |
GAATTCAAATTTAACCTTCT+CGG | 0.361148 | 1:+59449302 | None:intergenic |
ATATTGAAGTATCCACAAAT+TGG | 0.362130 | 1:-59449188 | MsaT003607.1:CDS |
CATTTAATAATCGTGCTTCT+GGG | 0.365719 | 1:-59448284 | MsaT003607.1:CDS |
GAGAGAGTAGAACGGCCTTC+AGG | 0.366937 | 1:-59448993 | MsaT003607.1:intron |
ACTTGTTTAACTATTGCAAT+AGG | 0.374193 | 1:-59452460 | MsaT003607.1:CDS |
TTCAGGTGGACCAGAGATTC+GGG | 0.376581 | 1:-59448712 | MsaT003607.1:intron |
TGACCTCCTTGGACCAAGTC+TGG | 0.378575 | 1:-59452486 | MsaT003607.1:CDS |
TTTCAGGTGGACCAGAGATT+CGG | 0.384714 | 1:-59448713 | MsaT003607.1:intron |
GCGGGTTATAATACCTCTAT+AGG | 0.393119 | 1:+59449568 | None:intergenic |
GTCATAAATCCAGGACAATC+AGG | 0.401717 | 1:-59449017 | MsaT003607.1:CDS |
ACTCTCTCTCCTGATTGTCC+TGG | 0.401749 | 1:+59449008 | None:intergenic |
AGTTTGATTATGTGTTTGAT+TGG | 0.406009 | 1:-59449214 | MsaT003607.1:CDS |
ACAAAGCAGAAGAGATGATC+TGG | 0.417037 | 1:-59449785 | MsaT003607.1:CDS |
AAATTGTACATGCTTCTTCA+AGG | 0.419496 | 1:-59452728 | MsaT003607.1:CDS |
TTTAGGACGCAAAGCAAATC+AGG | 0.425650 | 1:-59452236 | MsaT003607.1:intron |
TTTATGACTGGTTTCCCACT+TGG | 0.426175 | 1:+59449032 | None:intergenic |
TTTAAAATGGTTTGGAGTTG+AGG | 0.433665 | 1:-59452531 | MsaT003607.1:CDS |
GTCATTTGGAGAGCTCTACT+TGG | 0.434739 | 1:-59453907 | MsaT003607.1:CDS |
GATTGTCCTGGATTTATGAC+TGG | 0.439156 | 1:+59449020 | None:intergenic |
TTAAAATGGTTTGGAGTTGA+GGG | 0.440355 | 1:-59452530 | MsaT003607.1:CDS |
GTAGTGAAGTTGAGGATGTT+TGG | 0.441312 | 1:+59452757 | None:intergenic |
CGGCTAGAGCGGCTTTCACT+TGG | 0.441375 | 1:+59448378 | None:intergenic |
GTGTGCATGGTGATCATTCC+AGG | 0.443890 | 1:-59448635 | MsaT003607.1:CDS |
AACTGTTTCCCAGTCTCCCT+TGG | 0.448040 | 1:-59449657 | MsaT003607.1:intron |
GCAAGTGTTAATACTCATCT+AGG | 0.449215 | 1:-59449920 | MsaT003607.1:CDS |
CAGGTATACATAATTGATTA+CGG | 0.449576 | 1:-59450586 | MsaT003607.1:CDS |
ACCGCAACGATCGGCAGTAA+TGG | 0.450799 | 1:+59449380 | None:intergenic |
TCAGGTGTTAATGTACAAAC+TGG | 0.455615 | 1:-59453784 | MsaT003607.1:intron |
TAAAGTACTCACCCGGGCCC+TGG | 0.463637 | 1:+59449157 | None:intergenic |
TGCTACTGCTCAAGAGCAAT+CGG | 0.463680 | 1:+59448358 | None:intergenic |
TGAGGATGTTTGGTCTTCAC+AGG | 0.466320 | 1:+59452767 | None:intergenic |
AGAGATTCGGGATAGATTCT+CGG | 0.471393 | 1:-59448700 | MsaT003607.1:CDS |
GAGAATCTATCCCGAATCTC+TGG | 0.479581 | 1:+59448702 | None:intergenic |
TTAAACAAGTCTTCCAGACT+TGG | 0.485095 | 1:+59452473 | None:intergenic |
GAACTCCTGTCACTTGGCAC+TGG | 0.485260 | 1:-59448225 | MsaT003607.1:CDS |
TTGGATCTAGTTCCAGGGCC+CGG | 0.486826 | 1:-59449169 | MsaT003607.1:CDS |
CCTTGGCAAGGTTTGAAAGC+TGG | 0.488040 | 1:-59449640 | MsaT003607.1:CDS |
CAGGCATTTGCAAGAAGGAA+TGG | 0.490425 | 1:-59448669 | MsaT003607.1:CDS |
TGGATCTAGTTCCAGGGCCC+GGG | 0.493698 | 1:-59449168 | MsaT003607.1:intron |
AGCTTTGAACTCCTGTCACT+TGG | 0.494711 | 1:-59448231 | MsaT003607.1:CDS |
CTCTTGAGATACGAATAATC+AGG | 0.495706 | 1:+59449346 | None:intergenic |
CAGTTCAGGCATTTGCAAGA+AGG | 0.496735 | 1:-59448674 | MsaT003607.1:CDS |
TTTCCCAGTCTCCCTTGGCA+AGG | 0.501011 | 1:-59449652 | MsaT003607.1:intron |
GAAGATGCTTACTCCTATAG+AGG | 0.503426 | 1:-59449581 | MsaT003607.1:intron |
GAGTATTAACACTTGCATAC+CGG | 0.504831 | 1:+59449927 | None:intergenic |
ATTGGTGGAAAATTCAAGCT+TGG | 0.506372 | 1:-59453948 | MsaT003607.1:CDS |
GAGATTCGGGATAGATTCTC+GGG | 0.507677 | 1:-59448699 | MsaT003607.1:CDS |
GTGGAAAATTCAAGCTTGGA+AGG | 0.508145 | 1:-59453944 | MsaT003607.1:CDS |
CTGGAACTAGATCCAATTTG+TGG | 0.509685 | 1:+59449176 | None:intergenic |
CTCATCTGAAGATCTATGCC+TGG | 0.513835 | 1:+59448617 | None:intergenic |
AATTGTACATGCTTCTTCAA+GGG | 0.515160 | 1:-59452727 | MsaT003607.1:CDS |
TTTGCAAGAAGGAATGGATC+TGG | 0.516230 | 1:-59448663 | MsaT003607.1:CDS |
AAACAAACATGGTACCTGTA+TGG | 0.519200 | 1:+59450520 | None:intergenic |
CTAACCACGTCTTTAGAAGA+TGG | 0.525542 | 1:+59448594 | None:intergenic |
TTTGACTCGTAGTGAAGTTG+AGG | 0.532224 | 1:+59452749 | None:intergenic |
CCAGCTTTCAAACCTTGCCA+AGG | 0.533106 | 1:+59449640 | None:intergenic |
GTTAATACTCATCTAGGAGT+TGG | 0.534550 | 1:-59449914 | MsaT003607.1:intron |
AGTATTAACACTTGCATACC+GGG | 0.534714 | 1:+59449928 | None:intergenic |
GGGAAACCAGTCATAAATCC+AGG | 0.534889 | 1:-59449026 | MsaT003607.1:CDS |
TCCATTACTGCCGATCGTTG+CGG | 0.536213 | 1:-59449381 | MsaT003607.1:CDS |
TCATTTGGAGAGCTCTACTT+GGG | 0.539914 | 1:-59453906 | MsaT003607.1:intron |
CACACAAGCATATACCATAC+AGG | 0.541677 | 1:-59450534 | MsaT003607.1:intron |
CAGCTTTCAAACCTTGCCAA+GGG | 0.543251 | 1:+59449641 | None:intergenic |
TATCTTCAAACCGCAACGAT+CGG | 0.543597 | 1:+59449371 | None:intergenic |
CGTGACCTATTCATCCGAGA+AGG | 0.545158 | 1:-59449316 | MsaT003607.1:intron |
TTTGTGCAAGGCACATCCGT+TGG | 0.545816 | 1:-59449419 | MsaT003607.1:CDS |
GCCATGGCAATTGACCTCCT+TGG | 0.551055 | 1:-59452497 | MsaT003607.1:CDS |
AGTTGTCAGGCTTTATATCA+CGG | 0.558010 | 1:+59452269 | None:intergenic |
ATTGTACATGCTTCTTCAAG+GGG | 0.562314 | 1:-59452726 | MsaT003607.1:CDS |
CTTGGAAGGAAAATTGGTGG+TGG | 0.564080 | 1:-59453930 | MsaT003607.1:CDS |
AAAACCTCACTGGAACTGCC+CGG | 0.564841 | 1:-59449946 | MsaT003607.1:CDS |
GGATCTGGCCATGGTGTGCA+TGG | 0.573110 | 1:-59448648 | MsaT003607.1:CDS |
CGTGCTTCTGGGGCAAGAGG+TGG | 0.573464 | 1:-59448273 | MsaT003607.1:CDS |
GGACGGCTGCTAGATAAGAC+AGG | 0.584588 | 1:+59448417 | None:intergenic |
AGAGATGATCTGGAATCACT+TGG | 0.587254 | 1:-59449775 | MsaT003607.1:CDS |
AATCGTGCTTCTGGGGCAAG+AGG | 0.593465 | 1:-59448276 | MsaT003607.1:CDS |
AAGCTTGGAAGGAAAATTGG+TGG | 0.593603 | 1:-59453933 | MsaT003607.1:CDS |
GTTCACCAGAAGAGTTTGGA+CGG | 0.595743 | 1:+59448400 | None:intergenic |
ATTTAATAATCGTGCTTCTG+GGG | 0.598016 | 1:-59448283 | MsaT003607.1:CDS |
TCCAAGGAGGTCAATTGCCA+TGG | 0.600545 | 1:+59452496 | None:intergenic |
CAGGCTTTATATCACGGTGA+AGG | 0.608260 | 1:+59452275 | None:intergenic |
GCTTGTGTGTGTGAAGATCT+CGG | 0.612004 | 1:+59450548 | None:intergenic |
AAGTATGATGTAAATTCCAA+CGG | 0.613345 | 1:+59449403 | None:intergenic |
AGTCTTCCAGACTTGGTCCA+AGG | 0.617923 | 1:+59452480 | None:intergenic |
ACAAATTGGATCTAGTTCCA+GGG | 0.625877 | 1:-59449174 | MsaT003607.1:CDS |
GTTGAGTACATGCACTCCCG+TGG | 0.629864 | 1:-59452301 | MsaT003607.1:CDS |
ATGATGGATCATGTAATTGG+TGG | 0.630712 | 1:-59453963 | MsaT003607.1:CDS |
TTGGAAGGAAAATTGGTGGT+GGG | 0.637716 | 1:-59453929 | MsaT003607.1:CDS |
AGAAGGAATGGATCTGGCCA+TGG | 0.643782 | 1:-59448657 | MsaT003607.1:CDS |
TGAGGGTGACTACAATGCCA+TGG | 0.644969 | 1:-59452513 | MsaT003607.1:CDS |
TGTTAATGTACAAACTGGAG+AGG | 0.648733 | 1:-59453779 | MsaT003607.1:CDS |
ACTACTCAGAGGACTCAACC+AGG | 0.650293 | 1:-59448327 | MsaT003607.1:CDS |
CCGCGTAGCTCTTCTCGTCA+CGG | 0.653072 | 1:-59448456 | MsaT003607.1:CDS |
TGTAGCAAGCTGATTCTGAG+AGG | 0.654308 | 1:-59448479 | MsaT003607.1:intron |
AATGATCACCATGCACACCA+TGG | 0.661002 | 1:+59448640 | None:intergenic |
GATGATTTGGACTCAAGACC+TGG | 0.661178 | 1:+59448309 | None:intergenic |
ATCACGGTGAAGGAAACCAC+GGG | 0.662401 | 1:+59452285 | None:intergenic |
TCAAGAGCAATCGGCTAGAG+CGG | 0.663121 | 1:+59448367 | None:intergenic |
AATCAGGAGAGAGAGTAGAA+CGG | 0.663172 | 1:-59449001 | MsaT003607.1:CDS |
CATACCGGGCAGTTCCAGTG+AGG | 0.669824 | 1:+59449942 | None:intergenic |
TATCACGGTGAAGGAAACCA+CGG | 0.680680 | 1:+59452284 | None:intergenic |
CTTCCAGACTTGGTCCAAGG+AGG | 0.681469 | 1:+59452483 | None:intergenic |
TTGTACATGCTTCTTCAAGG+GGG | 0.696070 | 1:-59452725 | MsaT003607.1:CDS |
GTGGTCGTGATGATACACTC+AGG | 0.697269 | 1:-59448254 | MsaT003607.1:CDS |
TGAGCCATCTTCTAAAGACG+TGG | 0.710607 | 1:-59448598 | MsaT003607.1:intron |
GCAGACTATCTACTACTCAG+AGG | 0.717657 | 1:-59448338 | MsaT003607.1:CDS |
CCGTGACGAGAAGAGCTACG+CGG | 0.803013 | 1:+59448456 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 59448212 | 59453985 | 59448212 | ID=MsaG003607 |
Chr1 | mRNA | 59448212 | 59453985 | 59448212 | ID=MsaT003607.1;Parent=MsaG003607 |
Chr1 | exon | 59448212 | 59448496 | 59448212 | ID=MsaT003607.1.exon14;Parent=MsaT003607.1 |
Chr1 | CDS | 59448212 | 59448496 | 59448212 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59448599 | 59448729 | 59448599 | ID=MsaT003607.1.exon13;Parent=MsaT003607.1 |
Chr1 | CDS | 59448599 | 59448729 | 59448599 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59448994 | 59449054 | 59448994 | ID=MsaT003607.1.exon12;Parent=MsaT003607.1 |
Chr1 | CDS | 59448994 | 59449054 | 59448994 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59449169 | 59449242 | 59449169 | ID=MsaT003607.1.exon11;Parent=MsaT003607.1 |
Chr1 | CDS | 59449169 | 59449242 | 59449169 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59449317 | 59449443 | 59449317 | ID=MsaT003607.1.exon10;Parent=MsaT003607.1 |
Chr1 | CDS | 59449317 | 59449443 | 59449317 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59449582 | 59449666 | 59449582 | ID=MsaT003607.1.exon9;Parent=MsaT003607.1 |
Chr1 | CDS | 59449582 | 59449666 | 59449582 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59449745 | 59449808 | 59449745 | ID=MsaT003607.1.exon8;Parent=MsaT003607.1 |
Chr1 | CDS | 59449745 | 59449808 | 59449745 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59449915 | 59449976 | 59449915 | ID=MsaT003607.1.exon7;Parent=MsaT003607.1 |
Chr1 | CDS | 59449915 | 59449976 | 59449915 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59450535 | 59450605 | 59450535 | ID=MsaT003607.1.exon6;Parent=MsaT003607.1 |
Chr1 | CDS | 59450535 | 59450605 | 59450535 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59452237 | 59452332 | 59452237 | ID=MsaT003607.1.exon5;Parent=MsaT003607.1 |
Chr1 | CDS | 59452237 | 59452332 | 59452237 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59452418 | 59452566 | 59452418 | ID=MsaT003607.1.exon4;Parent=MsaT003607.1 |
Chr1 | CDS | 59452418 | 59452566 | 59452418 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59452723 | 59452792 | 59452723 | ID=MsaT003607.1.exon3;Parent=MsaT003607.1 |
Chr1 | CDS | 59452723 | 59452792 | 59452723 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59453762 | 59453802 | 59453762 | ID=MsaT003607.1.exon2;Parent=MsaT003607.1 |
Chr1 | CDS | 59453762 | 59453802 | 59453762 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Chr1 | exon | 59453907 | 59453985 | 59453907 | ID=MsaT003607.1.exon1;Parent=MsaT003607.1 |
Chr1 | CDS | 59453907 | 59453985 | 59453907 | ID=cds.MsaT003607.1;Parent=MsaT003607.1 |
Gene Sequence |
Protein sequence |