AlfalfaGEDB | MsaG003609

M. sativa ssp. caerulea / MsaG003609

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003609	XP_003590850.2	84.227	653	50	1	1	600	1	653	0.0	1055

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003609	sp\|Q9LUZ4\|C3H66_ARATH	49.331	598	249	15	27	591	8	584	0.0	530

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003609	tr\|G7I4W5\|G7I4W5_MEDTR	84.227	653	50	1	1	600	1	653	0.0	1055

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003609	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003609	MtrunA17_Chr1g0187591	84.227	653	50	1	1	600	1	653	0.0	1055
MsaG003609	MtrunA17_Chr3g0105131	68.007	572	117	6	1	572	1	506	0.0	715
MsaG003609	MtrunA17_Chr5g0430211	54.106	682	215	16	1	599	1	667	0.0	642
MsaG003609	MtrunA17_Chr3g0105101	71.991	432	62	5	37	468	29	401	0.0	600
MsaG003609	MtrunA17_Chr5g0437251	46.142	661	241	15	19	594	13	643	0.0	533
MsaG003609	MtrunA17_Chr7g0257831	41.379	667	259	19	30	594	44	680	8.25e-149	446
MsaG003609	MtrunA17_Chr3g0113651	43.151	584	203	17	31	591	8	485	5.17e-139	414
MsaG003609	MtrunA17_Chr3g0088521	39.642	671	276	21	30	596	42	687	3.75e-137	416
MsaG003609	MtrunA17_Chr3g0105121	53.083	373	142	5	228	590	8	357	4.03e-118	355
MsaG003609	MtrunA17_Chr1g0171151	40.121	496	233	13	32	472	30	516	1.92e-104	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003609	AT5G58620.1	49.331	598	249	15	27	591	8	584	0.0	530
MsaG003609	AT2G40140.2	46.535	606	258	17	1	591	1	555	1.97e-169	495
MsaG003609	AT2G40140.1	46.535	606	258	17	1	591	1	555	1.97e-169	495
MsaG003609	AT3G55980.1	46.281	605	253	14	1	591	1	547	6.78e-169	493
MsaG003609	AT3G55980.2	46.281	605	253	14	1	591	68	614	6.27e-168	493
MsaG003609	AT5G12850.1	42.602	615	260	20	25	556	34	638	1.64e-138	419
MsaG003609	AT2G41900.1	47.669	472	184	11	25	453	40	491	5.85e-136	413
MsaG003609	AT4G29190.1	42.979	235	99	6	218	441	68	278	2.08e-55	192
MsaG003609	AT5G07500.1	61.983	121	46	0	211	331	34	154	1.29e-53	183
MsaG003609	AT2G19810.1	55.195	154	52	3	214	365	61	199	3.90e-53	186

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Find 144 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGTCATGTGCAA+CGG	0.630659	1:+59481555	None:intergenic
AAACTTGAAAATCGCCTTAC+AGG	0.290393	1:+59482836	MsaT003609.1:CDS
AAATTAGACTGGTCCATCCG+CGG	0.659387	1:+59483172	MsaT003609.1:CDS
AACAAAGCAGCAACCATAAG+AGG	0.442942	1:-59481801	None:intergenic
AACACAAACCAGCAACTTCA+GGG	0.510224	1:+59482962	MsaT003609.1:CDS
AACGTTCTGCCTTCTCTGGT+TGG	0.399281	1:+59483134	MsaT003609.1:CDS
AAGGAGATGCAAGACCTGTA+AGG	0.541933	1:-59482850	None:intergenic
AAGGATTTCCCTGAAGTTGC+TGG	0.361234	1:-59482970	None:intergenic
AAGGTTGGATCACATGAAAT+GGG	0.495696	1:+59481762	MsaT003609.1:CDS
AAGTAGGGTTATGGTATGGA+AGG	0.522426	1:+59481739	MsaT003609.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	59481567	59483369	59481567	ID=MsaG003609
Chr1	mRNA	59481567	59483369	59481567	ID=MsaT003609.1;Parent=MsaG003609
Chr1	exon	59481567	59483369	59481567	ID=MsaT003609.1.exon1;Parent=MsaT003609.1
Chr1	CDS	59481567	59483369	59481567	ID=cds.MsaT003609.1;Parent=MsaT003609.1

Gene Sequence

>MsaT003609.1

ATGTGCAACGGTTCGAATAGAAAACCTTGTCAAACTGGTTTGATTAGGGAAAATGAATGTGAAAGACATGAAGAACTTCATCATAAGATTTCAGCATTGCTTGAGTTTTCAGCCAAAGATGATGTAATGGCGTTCACAGATGCTGTCGAAAAAGATGATCACGATGTTGATGAAGTAGGGTTATGGTATGGAAGGAAGGTTGGATCACATGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTGTTTGGAAGTATGGGTGTGTTGTCTTATATTCTTGGAACCGGTCGCGTTGATGTTAACCGAGCGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCAGAGGTTGTCAAGCTTTTGCTTGATGCATCTGCAGATGTTAGTTCCGCTGATGCAAACGGTAACAGGTGCAGCAACTTGATTGTCTCGGTTTCTAAGAGTATCTTCGGTTCAAGGAAGAGGATACTGAAAGGCTTACTAGAAGGCGTAGATGATATTGATGATGACGACGGCGATTTCCTTAAGGAAATAGGTTTCCAAATGGTGGAGCAGCAACAAGACGTAGGGACACCTCGAACCGAGAAGAAAGGTTATCCCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAACGCAAGGCGCCGTGATCCGAGGAAATATCATTACACATGTGTCCCTTGCCCCCAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGCTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACTGAATGCTCGAGAAGGGTTTGCTTTTTCGCTCACAAGCCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTCTACCTTCACCTACATCATATTCAAATTCACCAAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGACTTCTTTGATACAATCTGCGTCGACGCCACTTTTGACTCCATCTGCAGCATCATCACCTACGGCTGAAACCATGTGGCAGACTCAGATTCAGCTTAATGCTGCAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGCTAGAAATAATGCTGAATTTCTCAAACTTGAAAATCGCCTTACAGGTCTTGCATCTCCTTCAAATAGGCTTGCAGGAGTGAACCCTACTAACCTTGAAAACATTTTCGGGTCATCAATACAATCTCCGACATCAAGACAAGTGCATCAGAACACAAACCAGCAACTTCAGGGAAATCCTTTTGATCTGACCAATTCAAATGTGATTGGATCATCACAATTTGAAGTTGATGCCTTTTCGAAGCGGAGCCAAAGCTTTATTGAGCCCAACAGCGTTGCGAGCTTTAATCCCGAGCTTCCTTCTGCTAGCTCAGTTGCCATGGAACGTTCTGCCTTCTCTGGTTGGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCGCGGCAATCAACTTAATAAAATGAGGAAATCTTATTCTTTTGGCTTTCGAAACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAAGTGTTGATGATCCAGATATATTTTTAAGCCATGAATCTTGGGTTAATTCACTTGTGGAGGATGGTCCAACAATGGAACTTGATCAACATTAA

Protein sequence

>MsaT003609.1

MCNGSNRKPCQTGLIRENECERHEELHHKISALLEFSAKDDVMAFTDAVEKDDHDVDEVGLWYGRKVGSHEMGYEERTPLMVAALFGSMGVLSYILGTGRVDVNRACGSDRATALHCAVSGCSAASAEVVKLLLDASADVSSADANGNRCSNLIVSVSKSIFGSRKRILKGLLEGVDDIDDDDGDFLKEIGFQMVEQQQDVGTPRTEKKGYPIDPSLPDIKNGIYSTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYTCVPCPQFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDETECSRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSPTSLIQSASTPLLTPSAASSPTAETMWQTQIQLNAAVPTLQMPRSRFKTAMNARNNAEFLKLENRLTGLASPSNRLAGVNPTNLENIFGSSIQSPTSRQVHQNTNQQLQGNPFDLTNSNVIGSSQFEVDAFSKRSQSFIEPNSVASFNPELPSASSVAMERSAFSGWGSPDGKLDWSIRGNQLNKMRKSYSFGFRNRSSTSTMAAALSVDDPDIFLSHESWVNSLVEDGPTMELDQH*