AlfalfaGEDB | MsaG003610

M. sativa ssp. caerulea / MsaG003610

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003610	XP_003590850.2	81.470	653	56	3	1	588	1	653	0.0	1015

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003610	sp\|Q9LUZ4\|C3H66_ARATH	49.503	604	239	20	21	579	2	584	3.03e-180	525

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003610	tr\|G7I4W5\|G7I4W5_MEDTR	81.470	653	56	3	1	588	1	653	0.0	1015

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003610	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003610	MtrunA17_Chr1g0187591	81.470	653	56	3	1	588	1	653	0.0	1015
MsaG003610	MtrunA17_Chr3g0105131	69.435	566	107	7	1	560	1	506	0.0	723
MsaG003610	MtrunA17_Chr5g0430211	53.333	675	219	15	1	587	1	667	0.0	627
MsaG003610	MtrunA17_Chr3g0105101	73.068	427	60	5	37	462	29	401	0.0	602
MsaG003610	MtrunA17_Chr5g0437251	47.040	642	230	15	28	582	25	643	0.0	527
MsaG003610	MtrunA17_Chr7g0257831	40.582	653	266	16	33	582	47	680	1.27e-142	430
MsaG003610	MtrunA17_Chr3g0113651	44.618	576	194	18	31	579	8	485	2.60e-138	412
MsaG003610	MtrunA17_Chr3g0088521	37.688	666	284	18	30	584	42	687	2.32e-127	390
MsaG003610	MtrunA17_Chr3g0105121	55.041	367	138	5	222	578	8	357	4.69e-123	367
MsaG003610	MtrunA17_Chr1g0171151	40.773	466	220	11	33	451	31	487	9.64e-104	325

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003610	AT5G58620.1	49.503	604	239	20	21	579	2	584	0.0	525
MsaG003610	AT3G55980.1	46.231	597	253	14	1	579	1	547	6.37e-165	483
MsaG003610	AT3G55980.2	46.231	597	253	14	1	579	68	614	2.96e-164	483
MsaG003610	AT2G40140.2	47.443	567	234	15	33	579	33	555	2.22e-160	471
MsaG003610	AT2G40140.1	47.443	567	234	15	33	579	33	555	2.22e-160	471
MsaG003610	AT5G12850.1	41.534	626	262	21	16	547	20	635	1.36e-134	409
MsaG003610	AT2G41900.1	46.709	471	184	8	25	447	40	491	2.85e-134	408
MsaG003610	AT4G29190.1	42.128	235	101	6	212	435	68	278	1.50e-54	189
MsaG003610	AT5G07500.1	60.331	121	48	0	205	325	34	154	1.53e-52	180
MsaG003610	AT2G19810.1	62.295	122	44	1	208	327	61	182	7.93e-52	182

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Find 140 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGTCATGTGCAA+CGG	0.630659	1:+59488189	None:intergenic
AAATTAGACTGGTCCATCCC+CGG	0.564430	1:+59489788	MsaT003610.1:CDS
AACAAAGCAGCAACCATAAG+AGG	0.442942	1:-59488435	None:intergenic
AACCTTCTGCCTTCTCTGGT+TGG	0.384069	1:+59489750	MsaT003610.1:CDS
AACGCAAACCAGCAACTTTG+GGG	0.627454	1:+59489578	MsaT003610.1:CDS
AAGAAATGGGATATGAAGAG+AGG	0.624986	1:+59488409	MsaT003610.1:CDS
AAGCAAAAGTTTGACAACCT+CGG	0.631058	1:-59488580	None:intergenic
AAGGAGATGCAAGACCTGTA+AGG	0.541933	1:-59489466	None:intergenic
AAGGATTGCCCCAAAGTTGC+TGG	0.360358	1:-59489586	None:intergenic
AAGGTTGGATCAAAAGAAAT+GGG	0.451915	1:+59488396	MsaT003610.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	59488201	59489967	59488201	ID=MsaG003610
Chr1	mRNA	59488201	59489967	59488201	ID=MsaT003610.1;Parent=MsaG003610
Chr1	exon	59488201	59489967	59488201	ID=MsaT003610.1.exon1;Parent=MsaT003610.1
Chr1	CDS	59488201	59489967	59488201	ID=cds.MsaT003610.1;Parent=MsaT003610.1

Gene Sequence

>MsaT003610.1

ATGTGCAACGGTTCGAATAGAAAACCTTGTCAAACTTGTTTGATTAGGGAAAATGAAAGTGGAACACAAGAAGAACTTCATCATAAGATTTCACCTTTGCTTGAGTTTTCAGCCAAAGATGATATAATGGCGTTCACAAATGCTGTTGAAAAAGATGATCATGATGTTGATGAAGTAGGGTTATGGTATGGAAGGAAGGTTGGATCAAAAGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTGCTGCTTTGTTTGGAAGCAAGGGTGTGTTGTCTTATATTCTTGGAACCGGCCGCGTTGATGTTAACCGAGTGTGCGGCTCAGATAGGGCTACCGCTCTTCATTGTGCTGTTTCTGGTTGTTCTGCTGCTTCTGCCGAGGTTGTCAAACTTTTGCTTGATGCATCTGCAGATGTTAGTTCCGCTGATGCAAACGGTAACCGGTGCAGTGACTTGATTGTCTCGGTTTCTAAGAGTATCTTCGGTTCAAGGAAGAGGATACTACAAGGCAATGTTGATGACGAGGACGACGATTTCCTTAAGAAAATAGGTTTCCAAATGGTGGAGCAACAACAAGATGTAGGTACATCTCGAACTGAGAAGAAAGATCATCCCATTGATCCATCCCTACCTGACATAAAGAATGGAATATATAGTACAGATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGACTTATACTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCGATGAAATATCATTACACATGTGTCCCTTGCCCTGAGTTTCGGAAGGGATCATGCAACAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGTTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAAACCAGATGCATGAGAAGGGTTTGCTTTTTCGCTCACAAACCAGAGGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTCTACCTTCACCCACATCATATTCAAATTCACCAAGTGCTTCTTCAATGGATTCTTTCACATTGAGCTCTCCGTCTTCTTTGATACAATCTGCGTCGACGCCACCTTTGACTCCATCTGCAGCATCATCGCCTACGGCTGGAACCATGTGGCAGACTCAGATTCAGCTTCATGCTACAGTCCCTACCCTTCAGATGCCGAGAAGCAGATTTAAAACTGCAATGAATGCTAGAAATAATGCTGAATTTCTCGAACTTGAAAATCGCCTTACAGGTCTTGCATCTCCTTCAAATAGGCTTGCAGGAGTGAATCCTACTAACCTTGAAAACATTTTCGGGTCATCAATACAATCTCCGACATCAATACAAGTGCATCAGAACGCAAACCAGCAACTTTGGGGCAATCCTTTTGATCTTACCAATTCAAATGTGATTGCATCATCACAATTTAGAGTTGATGCCTTTTCGAAGCGGAGCCAAAGCTTTATTGAGCGCAACAGCGTTGCGAGCTTTAATTCTGAGCTTCCTTCTGCTAGCTCAGTTGCCATGGAACCTTCTGCCTTCTCTGGTTGGGGCTCTCCTGATGGAAAATTAGACTGGTCCATCCCCGGCAATGAACGCAATAAAATGAGGAAATCTTACAGAAGTAGCACTTCAACAATGGCTGCTGCATTAAGTGTTAATGATCCAGATATATTTTTAAGCCATGAATCTTGGGTTGATTCACTTGTGAATGATGGTCCAACAATGGAATTTGATCAACATTGA

Protein sequence

>MsaT003610.1

MCNGSNRKPCQTCLIRENESGTQEELHHKISPLLEFSAKDDIMAFTNAVEKDDHDVDEVGLWYGRKVGSKEMGYEERTPLMVAALFGSKGVLSYILGTGRVDVNRVCGSDRATALHCAVSGCSAASAEVVKLLLDASADVSSADANGNRCSDLIVSVSKSIFGSRKRILQGNVDDEDDDFLKKIGFQMVEQQQDVGTSRTEKKDHPIDPSLPDIKNGIYSTDEFRMFTFKVKPCSRTYTHDWTECPFVHPGENARRRDPMKYHYTCVPCPEFRKGSCNKGDACEYAHGIFECWLHPAQYRTRLCKDETRCMRRVCFFAHKPEELRPLYASTGSALPSPTSYSNSPSASSMDSFTLSSPSSLIQSASTPPLTPSAASSPTAGTMWQTQIQLHATVPTLQMPRSRFKTAMNARNNAEFLELENRLTGLASPSNRLAGVNPTNLENIFGSSIQSPTSIQVHQNANQQLWGNPFDLTNSNVIASSQFRVDAFSKRSQSFIERNSVASFNSELPSASSVAMEPSAFSGWGSPDGKLDWSIPGNERNKMRKSYRSSTSTMAAALSVNDPDIFLSHESWVDSLVNDGPTMEFDQH*