AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003680 MtrunA17_Chr1g0188441 93.717 191 8 1 8 194 1 191 4.43e-132 368
MsaG003680 MtrunA17_Chr4g0076821 40.928 237 80 5 15 191 112 348 7.57e-56 180
MsaG003680 MtrunA17_Chr5g0412501 46.193 197 84 4 14 189 76 271 2.66e-53 171
MsaG003680 MtrunA17_Chr3g0133181 44.000 200 90 3 13 191 77 275 4.12e-50 163
MsaG003680 MtrunA17_Chr5g0404271 40.887 203 89 5 16 191 99 297 1.99e-46 154
MsaG003680 MtrunA17_Chr5g0427051 39.906 213 90 4 14 189 56 267 5.15e-46 152
MsaG003680 MtrunA17_Chr7g0217231 41.176 204 87 6 13 189 85 282 8.40e-45 151
MsaG003680 MtrunA17_Chr8g0367691 37.143 210 87 4 15 189 68 267 4.11e-41 140
MsaG003680 MtrunA17_Chr2g0315941 36.792 212 84 5 16 189 68 267 5.93e-41 139
MsaG003680 MtrunA17_Chr6g0453231 39.189 222 59 7 16 189 91 284 4.53e-40 139
MsaG003680 MtrunA17_Chr6g0479901 38.506 174 71 7 16 185 19 160 2.01e-33 117
MsaG003680 MtrunA17_Chr8g0361671 63.492 63 23 0 127 189 271 333 1.21e-21 90.9
MsaG003680 MtrunA17_Chr8g0361671 63.793 58 19 1 12 67 60 117 2.78e-19 84.3
MsaG003680 MtrunA17_Chr3g0092371 58.929 56 23 0 14 69 18 73 1.22e-19 79.3
MsaG003680 MtrunA17_Chr6g0453221 60.000 55 18 1 10 64 15 65 5.49e-17 72.4
MsaG003680 MtrunA17_Chr4g0060731 55.172 58 21 2 10 66 19 72 1.55e-14 65.9
MsaG003680 MtrunA17_Chr8g0357741 37.624 101 43 2 89 189 16 96 2.67e-14 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003680 AT1G14440.1 48.990 198 84 4 10 190 84 281 2.25e-59 188
MsaG003680 AT1G14440.2 48.990 198 84 4 10 190 84 281 2.25e-59 188
MsaG003680 AT2G02540.2 48.058 206 81 5 9 189 80 284 9.00e-59 187
MsaG003680 AT2G02540.1 48.058 206 81 5 9 189 80 284 9.00e-59 187
MsaG003680 AT4G24660.1 47.486 179 85 2 14 189 47 219 1.72e-53 170
MsaG003680 AT4G24660.2 47.727 176 83 2 14 186 47 216 2.29e-52 168
MsaG003680 AT5G65410.1 43.478 184 89 2 15 188 74 252 8.64e-49 160
MsaG003680 AT1G69600.1 41.919 198 91 5 8 186 23 215 4.75e-46 152
MsaG003680 AT2G18350.1 43.011 186 95 3 14 191 80 262 2.03e-45 151
MsaG003680 AT5G60480.1 46.111 180 84 7 10 183 31 203 1.47e-44 147
MsaG003680 AT5G15210.1 43.229 192 87 6 9 183 49 235 5.33e-42 142
MsaG003680 AT3G28920.1 41.429 210 78 5 14 186 50 251 6.32e-41 140
MsaG003680 AT3G50890.1 41.451 193 99 3 14 194 58 248 4.02e-40 137
MsaG003680 AT5G42780.1 38.095 189 105 6 3 184 53 236 9.52e-27 102
MsaG003680 AT1G75240.1 67.241 58 19 0 11 68 71 128 1.10e-24 98.6
MsaG003680 AT1G75240.1 55.882 68 30 0 127 194 240 307 1.15e-19 85.1
MsaG003680 AT1G74660.2 61.404 57 22 0 14 70 37 93 1.40e-21 85.1
MsaG003680 AT1G74660.1 61.404 57 22 0 14 70 37 93 1.84e-21 84.7
MsaG003680 AT5G39760.1 57.576 66 28 0 127 192 200 265 1.57e-20 87.8
MsaG003680 AT5G39760.1 56.667 60 24 1 12 69 52 111 8.39e-16 74.7
MsaG003680 AT3G28917.1 60.345 58 22 1 14 70 31 88 1.36e-19 80.1
MsaG003680 AT1G14687.1 30.857 175 103 6 16 186 7 167 5.56e-19 80.5
MsaG003680 AT1G18835.1 61.404 57 19 1 14 70 24 77 8.54e-19 77.4

Find 22 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATTAATGCACCTTTCT+TGG 0.224192 1:-60483780 MsaT003680.1:CDS
CTATGAGAAAGATTGTATTA+AGG 0.356438 1:-60483702 MsaT003680.1:CDS
GATGTTGTGCTTTGCAGAAA+AGG 0.435319 1:-60483603 MsaT003680.1:CDS
GCTTGTAGAAAGATTTCTCT+TGG 0.457726 1:+60483466 None:intergenic
AAGAACCATGCAGCTACAAT+TGG 0.462343 1:-60483965 MsaT003680.1:CDS
TATTATGCATCCACACTTTG+AGG 0.473414 1:+60483504 None:intergenic
ATTGGTGGCAATGCAATTGA+TGG 0.483673 1:-60483947 MsaT003680.1:CDS
TTATCTCCTAACAACAAAAG+TGG 0.483711 1:-60483752 MsaT003680.1:CDS
GGTGCATTAATGTTATGATC+AGG 0.492826 1:+60483788 None:intergenic
GAAAGATTGTATTAAGGATG+TGG 0.506741 1:-60483696 MsaT003680.1:CDS
TAAGTTCAGTAAAGAACAGA+AGG 0.524622 1:-60483630 MsaT003680.1:CDS
AACCATGCAGCTACAATTGG+TGG 0.533193 1:-60483962 MsaT003680.1:CDS
GGAGATAAATGAGCCAAGAA+AGG 0.551764 1:+60483767 None:intergenic
AAAAGATGATAGTTAAGAAG+AGG 0.567751 1:-60483661 MsaT003680.1:CDS
TGCCACCAATTGTAGCTGCA+TGG 0.577086 1:+60483960 None:intergenic
TCATAGTAAGACTGATCAGA+AGG 0.587248 1:+60483719 None:intergenic
GGCAATGCAATTGATGGATG+TGG 0.602522 1:-60483941 MsaT003680.1:CDS
AGAGAAGAATCCTCAAAGTG+TGG 0.619701 1:-60483514 MsaT003680.1:CDS
TTGCAGAAAAGGCTGAGTGG+AGG 0.634235 1:-60483592 MsaT003680.1:CDS
TCAGAAGCTAGATGAATCTG+TGG 0.653987 1:-60483567 MsaT003680.1:CDS
TGTGGTGAGTTCATGCCAAG+TGG 0.691258 1:-60483923 MsaT003680.1:CDS
GCTTTGCAGAAAAGGCTGAG+TGG 0.707295 1:-60483595 MsaT003680.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 60483463 60484047 60483463 ID=MsaG003680
Chr1 mRNA 60483463 60484047 60483463 ID=MsaT003680.1;Parent=MsaG003680
Chr1 exon 60483463 60484047 60483463 ID=MsaT003680.1.exon1;Parent=MsaT003680.1
Chr1 CDS 60483463 60484047 60483463 ID=cds.MsaT003680.1;Parent=MsaT003680.1
Gene Sequence

>MsaT003680.1

ATGGAGTCTAGCATTTTTCATGTTGAGAAAAAGATAGTAGTGAAATATAAAGAGTGTCTCAAGAACCATGCAGCTACAATTGGTGGCAATGCAATTGATGGATGTGGTGAGTTCATGCCAAGTGGAAAACATGACACACTTGAAGCTCTCAAATGTTGTGCATGCAATTGCCACAGAAACTTCCACAGAAAAGAAATAGAGTCTGATTTTCAACATTATGCTAATCTTTCACTGATTCCTGATCATAACATTAATGCACCTTTCTTGGCTCATTTATCTCCTAACAACAAAAGTGGATCAACTAGTCCTTCTGATCAGTCTTACTATGAGAAAGATTGTATTAAGGATGTGGAAAATCGAACCGAAAAGATGATAGTTAAGAAGAGGTCTAGAACTAAGTTCAGTAAAGAACAGAAGGAGAAGATGTTGTGCTTTGCAGAAAAGGCTGAGTGGAGGATTCAGAAGCTAGATGAATCTGTGGTGCAGAAGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATCCTCAAAGTGTGGATGCATAATAACAAGAACACTTTTGCCAAGAGAAATCTTTCTACAAGCTAG

Protein sequence

>MsaT003680.1

MESSIFHVEKKIVVKYKECLKNHAATIGGNAIDGCGEFMPSGKHDTLEALKCCACNCHRNFHRKEIESDFQHYANLSLIPDHNINAPFLAHLSPNNKSGSTSPSDQSYYEKDCIKDVENRTEKMIVKKRSRTKFSKEQKEKMLCFAEKAEWRIQKLDESVVQKFCQEIGIKRRILKVWMHNNKNTFAKRNLSTS*