AlfalfaGEDB | MsaG003698

M. sativa ssp. caerulea / MsaG003698

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003698	XP_003614286.1	61.538	117	45	0	1	117	1	117	9.62e-43	148

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003698	sp\|Q7XJK5\|AGL90_ARATH	39.474	114	68	1	5	117	3	116	5.78e-20	86.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003698	tr\|G7JY85\|G7JY85_MEDTR	61.538	117	45	0	1	117	1	117	4.59e-43	148

TFs/TRs:

Gene ID	Type	Classification
MsaG003698	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003698	MtrunA17_Chr5g0420351	61.538	117	45	0	1	117	1	117	8.85e-47	148
MsaG003698	MtrunA17_Chr4g0012761	50.314	159	55	1	1	135	1	159	8.08e-42	136
MsaG003698	MtrunA17_Chr7g0218151	49.057	159	57	1	1	135	1	159	1.41e-41	135
MsaG003698	MtrunA17_Chr1g0197461	50.388	129	62	1	3	129	2	130	5.44e-40	131
MsaG003698	MtrunA17_Chr1g0193311	57.025	121	52	0	1	121	1	121	2.01e-39	130
MsaG003698	MtrunA17_Chr1g0188661	47.170	159	60	1	1	135	1	159	4.61e-39	129
MsaG003698	MtrunA17_Chr1g0188681	42.675	157	66	1	1	133	1	157	3.40e-37	124
MsaG003698	MtrunA17_Chr1g0188651	46.497	157	62	2	1	135	1	157	5.61e-37	123
MsaG003698	MtrunA17_Chr1g0197321	47.934	121	63	0	1	121	1	121	3.31e-36	121
MsaG003698	MtrunA17_Chr1g0197261	47.934	121	63	0	1	121	1	121	7.68e-34	115
MsaG003698	MtrunA17_Chr4g0013041	36.441	118	72	2	1	117	1	116	8.97e-24	91.3
MsaG003698	MtrunA17_Chr4g0014321	35.593	118	75	1	1	117	1	118	6.48e-22	87.0
MsaG003698	MtrunA17_Chr3g0110131	41.525	118	68	1	1	117	1	118	1.82e-20	83.6
MsaG003698	MtrunA17_Chr3g0107381	36.441	118	74	1	1	117	1	118	3.35e-20	82.4
MsaG003698	MtrunA17_Chr3g0107331	38.168	131	78	2	3	132	2	130	4.16e-20	80.9
MsaG003698	MtrunA17_Chr4g0014031	35.766	137	85	2	1	134	1	137	8.27e-20	81.6
MsaG003698	MtrunA17_Chr8g0351751	34.965	143	82	3	1	135	1	140	2.43e-19	80.5
MsaG003698	MtrunA17_Chr3g0107351	36.207	116	73	1	3	117	2	117	1.00e-17	74.7
MsaG003698	MtrunA17_Chr2g0296831	34.746	118	76	1	1	117	1	118	1.30e-17	73.2
MsaG003698	MtrunA17_Chr5g0432691	36.275	102	64	1	1	101	1	102	3.54e-17	73.2
MsaG003698	MtrunA17_Chr4g0014131	38.686	137	81	2	1	134	1	137	7.33e-17	73.9
MsaG003698	MtrunA17_Chr4g0014121	38.406	138	82	2	1	135	29	166	8.08e-17	72.8
MsaG003698	MtrunA17_Chr3g0107341	33.621	116	76	1	3	117	2	117	4.94e-16	70.1
MsaG003698	MtrunA17_Chr3g0107361	35.345	116	74	1	3	117	2	117	5.73e-16	70.1
MsaG003698	MtrunA17_Chr3g0107461	30.973	113	77	1	1	112	1	113	3.89e-15	67.8
MsaG003698	MtrunA17_Chr2g0283941	33.898	118	77	1	1	118	1	117	5.90e-13	63.5
MsaG003698	MtrunA17_Chr4g0008701	26.772	127	90	2	3	126	6	132	2.88e-11	59.7
MsaG003698	MtrunA17_Chr7g0267601	27.778	108	77	1	3	109	6	113	6.14e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003698	AT5G27960.1	39.474	114	68	1	5	117	3	116	5.87e-21	86.7
MsaG003698	AT5G26630.1	37.313	134	75	2	1	133	1	126	8.53e-21	84.3
MsaG003698	AT1G65330.1	34.677	124	80	1	3	125	2	125	1.32e-19	82.4
MsaG003698	AT5G26650.1	37.719	114	70	1	5	117	3	116	1.55e-19	83.2
MsaG003698	AT1G65300.1	34.167	120	78	1	3	121	2	121	2.61e-19	81.6
MsaG003698	AT3G05860.2	33.333	138	83	4	1	135	1	132	1.05e-16	73.2
MsaG003698	AT3G05860.3	33.333	138	83	4	1	135	1	132	2.51e-16	73.2
MsaG003698	AT1G31630.1	32.759	116	76	2	3	117	2	116	2.54e-16	73.9
MsaG003698	AT3G05860.1	33.333	138	83	4	1	135	1	132	3.14e-16	72.8
MsaG003698	AT5G48670.1	35.593	118	75	1	1	117	1	118	3.88e-16	73.6
MsaG003698	AT1G31640.1	32.174	115	76	2	3	116	2	115	1.97e-14	68.9
MsaG003698	AT5G26580.1	34.746	118	62	3	1	117	1	104	1.71e-12	63.5
MsaG003698	AT2G28700.1	30.303	132	85	2	1	128	1	129	1.43e-11	60.8
MsaG003698	AT1G22590.2	27.778	126	90	1	1	126	1	125	1.62e-11	58.9
MsaG003698	AT5G27810.1	30.682	88	60	1	31	117	3	90	2.03e-11	57.4

Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCTATCATTGATGAATTT+TGG	0.169071	1:+60734571	None:intergenic
AGCTTTCCTTGCTAAATATT+TGG	0.216107	1:+60734749	None:intergenic
ACCTCTGTTTCGGAATTAAA+AGG	0.225174	1:+60734636	None:intergenic
TGCTAAATATTTGGAGATAA+AGG	0.240702	1:+60734758	None:intergenic
GTAGCTCTTAAGACCTTGTT+TGG	0.358470	1:+60734593	None:intergenic
ATCTGGCCACACCTCTGTTT+CGG	0.384477	1:+60734626	None:intergenic
TATGATTCTTGAACTTAAGA+AGG	0.409403	1:-60734439	MsaT003698.1:CDS
TGTTTCGGAATTAAAAGGAT+TGG	0.421452	1:+60734641	None:intergenic
TGTTTGGCACCCTCTAGATC+TGG	0.457133	1:+60734609	None:intergenic
CAAGGCCATGGCTAGGAGTA+AGG	0.469639	1:-60734790	None:intergenic
TAAGTTCAAGAATCATAAGA+AGG	0.499644	1:+60734445	None:intergenic
GCAGAAGATTACTGAAGCCA+AGG	0.517795	1:-60734514	MsaT003698.1:CDS
AGAGAACTCACTATTCTTTG+TGG	0.526508	1:-60734687	MsaT003698.1:CDS
AGACAATCATGAGAAGAAGT+TGG	0.529577	1:-60734469	MsaT003698.1:CDS
TTATCTCCAAATATTTAGCA+AGG	0.539762	1:-60734755	MsaT003698.1:CDS
GATCTAGAGGGTGCCAAACA+AGG	0.565612	1:-60734606	MsaT003698.1:CDS
AAAGAATGCTCTCTTTGAGA+AGG	0.568994	1:-60734712	MsaT003698.1:CDS
AGAGGTGTGGCCAGATCTAG+AGG	0.570284	1:-60734619	MsaT003698.1:CDS
TGCATTGCAAGGCCATGGCT+AGG	0.571000	1:-60734797	None:intergenic
TTTCACCTTACTCCTAGCCA+TGG	0.587383	1:+60734785	None:intergenic
TAAGAAGGTAATTGATGACA+AGG	0.625288	1:-60734424	MsaT003698.1:CDS
AGCATTCTTTCTCCGCATGT+AGG	0.642073	1:+60734725	None:intergenic
CAAGGAAAGCTGCCTACATG+CGG	0.644135	1:-60734737	MsaT003698.1:CDS
TTAATTCCGAAACAGAGGTG+TGG	0.655386	1:-60734632	MsaT003698.1:CDS
GAGGTGTGGCCAGATCTAGA+GGG	0.694385	1:-60734618	MsaT003698.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	60734398	60734805	60734398	ID=MsaG003698
Chr1	mRNA	60734398	60734805	60734398	ID=MsaT003698.1;Parent=MsaG003698
Chr1	exon	60734398	60734805	60734398	ID=MsaT003698.1.exon1;Parent=MsaT003698.1
Chr1	CDS	60734398	60734805	60734398	ID=cds.MsaT003698.1;Parent=MsaT003698.1

Gene Sequence

>MsaT003698.1

ATGGCTAGGAGTAAGGTGAAACTTGCCTTTATCTCCAAATATTTAGCAAGGAAAGCTGCCTACATGCGGAGAAAGAATGCTCTCTTTGAGAAGGTGAGAGAACTCACTATTCTTTGTGGTATTTCAGCTTTTGTTGTAATTTCCAATCCTTTTAATTCCGAAACAGAGGTGTGGCCAGATCTAGAGGGTGCCAAACAAGGTCTTAAGAGCTACCAAAATTCATCAATGATAGCTGAGACAAATGATATGAACGAAGAAAGTCTTCTTTTGCAGAAGATTACTGAAGCCAAGGAAAACCTGAAAATGCTGAAACAAGACAATCATGAGAAGAAGTTGGACCTTCTTATGATTCTTGAACTTAAGAAGGTAATTGATGACAAGGTTGCTGCACTCAATTTATCAAATTGA

Protein sequence

>MsaT003698.1

MARSKVKLAFISKYLARKAAYMRRKNALFEKVRELTILCGISAFVVISNPFNSETEVWPDLEGAKQGLKSYQNSSMIAETNDMNEESLLLQKITEAKENLKMLKQDNHEKKLDLLMILELKKVIDDKVAALNLSN*