AlfalfaGEDB | MsaG003699

M. sativa ssp. caerulea / MsaG003699

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003699	XP_013468828.1	74.522	157	15	1	1	132	1	157	1.68e-63	201

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003699	sp\|Q9FJK3\|AGL80_ARATH	39.355	155	62	3	1	125	1	153	3.43e-20	87.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003699	tr\|A0A072VXU8\|A0A072VXU8_MEDTR	74.522	157	15	1	1	132	1	157	8.00e-64	201

TFs/TRs:

Gene ID	Type	Classification
MsaG003699	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003699	MtrunA17_Chr1g0188651	74.522	157	15	1	1	132	1	157	1.54e-67	201
MsaG003699	MtrunA17_Chr1g0188661	62.264	159	33	2	1	132	1	159	4.96e-56	172
MsaG003699	MtrunA17_Chr4g0012761	62.893	159	32	2	1	132	1	159	5.22e-55	169
MsaG003699	MtrunA17_Chr1g0188681	57.962	157	39	2	1	130	1	157	4.32e-54	167
MsaG003699	MtrunA17_Chr7g0218151	61.006	159	35	2	1	132	1	159	7.48e-53	164
MsaG003699	MtrunA17_Chr1g0193311	64.516	155	28	2	1	128	1	155	2.15e-52	162
MsaG003699	MtrunA17_Chr5g0420351	58.333	156	38	2	1	129	1	156	2.79e-52	162
MsaG003699	MtrunA17_Chr1g0197261	46.795	156	56	2	1	129	1	156	7.84e-39	128
MsaG003699	MtrunA17_Chr1g0197461	47.403	154	54	2	2	128	1	154	1.42e-37	125
MsaG003699	MtrunA17_Chr1g0197321	44.586	157	59	2	1	129	1	157	7.09e-36	120
MsaG003699	MtrunA17_Chr5g0432691	33.974	156	75	2	1	128	1	156	3.38e-27	99.0
MsaG003699	MtrunA17_Chr3g0107381	36.601	153	69	2	1	125	1	153	1.50e-25	96.3
MsaG003699	MtrunA17_Chr4g0014321	31.818	154	76	2	1	125	1	154	2.59e-24	93.2
MsaG003699	MtrunA17_Chr3g0110131	38.854	157	68	3	1	129	1	157	4.45e-22	87.8
MsaG003699	MtrunA17_Chr2g0283941	34.416	154	72	3	1	125	1	154	4.73e-22	87.4
MsaG003699	MtrunA17_Chr4g0013041	32.278	158	70	4	1	126	1	153	3.92e-21	84.3
MsaG003699	MtrunA17_Chr3g0107331	36.076	158	73	2	2	131	1	158	5.27e-21	82.8
MsaG003699	MtrunA17_Chr3g0107461	29.814	161	84	2	1	132	1	161	2.53e-20	81.3
MsaG003699	MtrunA17_Chr8g0351751	57.627	59	25	0	1	59	1	59	6.13e-20	82.0
MsaG003699	MtrunA17_Chr4g0014031	32.919	161	79	2	1	132	1	161	1.56e-18	78.2
MsaG003699	MtrunA17_Chr3g0107351	35.220	159	75	2	2	132	1	159	2.00e-18	76.3
MsaG003699	MtrunA17_Chr3g0107361	33.962	159	77	2	2	132	1	159	4.55e-18	75.5
MsaG003699	MtrunA17_Chr4g0014121	34.375	160	76	2	1	131	29	188	1.35e-17	74.7
MsaG003699	MtrunA17_Chr4g0014131	32.919	161	79	2	1	132	1	161	9.51e-17	73.6
MsaG003699	MtrunA17_Chr3g0107341	45.745	94	48	1	2	92	1	94	3.72e-16	70.5
MsaG003699	MtrunA17_Chr4g0008701	35.433	127	65	3	3	127	6	117	6.81e-16	72.8
MsaG003699	MtrunA17_Chr7g0267601	37.647	85	53	0	3	87	6	90	8.70e-16	72.4
MsaG003699	MtrunA17_Chr2g0296831	35.652	115	48	1	1	89	1	115	2.11e-14	65.1
MsaG003699	MtrunA17_Chr2g0296861	30.323	155	76	3	1	125	1	153	5.64e-14	64.7
MsaG003699	MtrunA17_Chr3g0105791	27.820	133	67	2	29	132	1	133	2.17e-13	62.8
MsaG003699	MtrunA17_Chr4g0031421	27.820	133	67	2	29	132	1	133	1.20e-12	60.8
MsaG003699	MtrunA17_Chr3g0128721	35.294	85	55	0	3	87	6	90	8.69e-12	61.2
MsaG003699	MtrunA17_Chr3g0106501	29.771	131	63	3	29	130	1	131	5.44e-11	56.6
MsaG003699	MtrunA17_Chr3g0106421	30.952	126	58	4	29	125	1	126	7.27e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003699	AT3G05860.2	40.580	138	70	6	1	132	1	132	4.54e-25	95.1
MsaG003699	AT3G05860.3	40.580	138	70	6	1	132	1	132	1.15e-24	95.1
MsaG003699	AT3G05860.1	40.580	138	70	6	1	132	1	132	1.35e-24	95.1
MsaG003699	AT5G48670.1	39.355	155	62	3	1	125	1	153	3.48e-21	87.0
MsaG003699	AT1G22590.2	45.205	73	40	0	1	73	1	73	1.20e-18	77.4
MsaG003699	AT5G27960.1	39.640	111	41	1	4	88	2	112	2.49e-18	79.3
MsaG003699	AT1G65330.1	31.757	148	73	2	2	121	1	148	2.68e-18	78.6
MsaG003699	AT1G65300.1	29.605	152	79	2	2	125	1	152	2.79e-18	78.6
MsaG003699	AT5G26650.1	35.065	154	64	4	4	125	2	151	3.01e-18	79.3
MsaG003699	AT1G31630.1	29.299	157	78	4	2	128	1	154	5.62e-18	78.6
MsaG003699	AT5G26630.1	32.680	153	75	2	1	125	1	153	5.47e-17	74.3
MsaG003699	AT2G28700.1	37.234	94	56	1	1	91	1	94	1.72e-16	74.3
MsaG003699	AT1G31640.1	36.283	113	45	2	2	88	1	112	6.47e-16	73.2
MsaG003699	AT5G26580.1	40.196	102	47	3	1	90	1	100	6.80e-14	67.4

Find 22 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAGCTAAAGATTCGTATAAT+TGG	0.305787	1:-60802029	MsaT003699.1:CDS
CTCCTTTCTTCTTGAAGCAT+TGG	0.353516	1:+60802325	None:intergenic
GCTTTGGCGTCCTTCAGATT+TGG	0.393835	1:+60802185	None:intergenic
TCTGAAACAGTCAAATCATC+TGG	0.455315	1:+60801990	None:intergenic
CTACCTCTCAATCACCGCTT+TGG	0.465393	1:+60802169	None:intergenic
CTCCAATGCTTCAAGAAGAA+AGG	0.468651	1:-60802327	MsaT003699.1:CDS
CAAGGCCATGGTTCGGAAGA+AGG	0.471800	1:-60802366	None:intergenic
TACATTGCAAGGCCATGGTT+CGG	0.507534	1:-60802373	None:intergenic
GACATACAGAAAGAGAAAGA+AGG	0.512113	1:-60802303	MsaT003699.1:CDS
AGAGAACTCACTATTCTTTG+TGG	0.526508	1:-60802263	MsaT003699.1:CDS
ACATACAGAAAGAGAAAGAA+GGG	0.541098	1:-60802302	MsaT003699.1:CDS
TGCAGCAGATTACTAAAGCT+AGG	0.546331	1:-60802091	MsaT003699.1:intron
AAACAGTCAAATCATCTGGC+AGG	0.548613	1:+60801994	None:intergenic
AGGATCGGAAATTATAGCAC+AGG	0.559456	1:+60802232	None:intergenic
TCGGAAATTATAGCACAGGC+TGG	0.570119	1:+60802236	None:intergenic
AGAGGTGTGGCCAAATCTGA+AGG	0.576828	1:-60802195	MsaT003699.1:CDS
AAAGAAGGGTATCATCAAGA+AGG	0.577075	1:-60802288	MsaT003699.1:CDS
CTTCACCTTCTTCCGAACCA+TGG	0.581108	1:+60802361	None:intergenic
GCAGCAGATTACTAAAGCTA+GGG	0.592338	1:-60802090	MsaT003699.1:intron
GAAACAAGACAATCGTGAGA+AGG	0.628912	1:-60802051	MsaT003699.1:CDS
TTGATTCTAAAACAGAGGTG+TGG	0.633348	1:-60802208	MsaT003699.1:CDS
AAATCTGAAGGACGCCAAAG+CGG	0.705263	1:-60802183	MsaT003699.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	60801908	60802381	60801908	ID=MsaG003699
Chr1	mRNA	60801908	60802381	60801908	ID=MsaT003699.1;Parent=MsaG003699
Chr1	exon	60801908	60802108	60801908	ID=MsaT003699.1.exon2;Parent=MsaT003699.1
Chr1	CDS	60801908	60802108	60801908	ID=cds.MsaT003699.1;Parent=MsaT003699.1
Chr1	exon	60802184	60802381	60802184	ID=MsaT003699.1.exon1;Parent=MsaT003699.1
Chr1	CDS	60802184	60802381	60802184	ID=cds.MsaT003699.1;Parent=MsaT003699.1

Gene Sequence

>MsaT003699.1

ATGGTTCGGAAGAAGGTGAAGCTTGCTTTTATCTCCAATGCTTCAAGAAGAAAGGAGACATACAGAAAGAGAAAGAAGGGTATCATCAAGAAGGTGAGAGAACTCACTATTCTTTGTGGTATTCCAGCCTGTGCTATAATTTCCGATCCTTTTGATTCTAAAACAGAGGTGTGGCCAAATCTGAAGGACGCCAAAGCGCAGATTACTAAAGCTAGGGAACAACTGAAAAAGCTGAAACAAGACAATCGTGAGAAGGAGCTAAAGATTCGTATAATTGGATACATGCAAAACCTGCCAGATGATTTGACTGTTTCAGATTTGAAAGAACTTGATACGATAATTGAGAAAAATATGAAGGAAATTGATGAAAAGATTGTCGCACTCAATTTATCAGATTGA

Protein sequence

>MsaT003699.1

MVRKKVKLAFISNASRRKETYRKRKKGIIKKVRELTILCGIPACAIISDPFDSKTEVWPNLKDAKAQITKAREQLKKLKQDNREKELKIRIIGYMQNLPDDLTVSDLKELDTIIEKNMKEIDEKIVALNLSD*