AlfalfaGEDB | MsaG003702

M. sativa ssp. caerulea / MsaG003702

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003702	XP_013468831.1	90.769	130	12	0	1	130	1	130	4.24e-82	248

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003702	sp\|O80805\|PHE1_ARATH	41.727	139	71	2	3	131	2	140	1.02e-28	108

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003702	tr\|A0A072VNB0\|A0A072VNB0_MEDTR	90.769	130	12	0	1	130	1	130	2.02e-82	248

TFs/TRs:

Gene ID	Type	Classification
MsaG003702	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003702	MsaG010651	0.821332	7.504145e-53	1.709649e-50
MsaG003702	MsaG017311	0.800116	2.800273e-48	3.795991e-46
MsaG003702	MsaG026754	0.811053	1.454286e-50	2.548131e-48
MsaG003702	MsaG027762	0.802336	9.886187e-49	1.409386e-46
MsaG003702	MsaG041919	0.816709	8.351666e-52	1.686168e-49
MsaG003702	MsaG045518	0.813459	4.364586e-51	8.116744e-49
MsaG003702	MsaG002348	0.805344	2.362296e-49	3.610072e-47
MsaG003702	MsaG008811	0.808518	5.071681e-50	8.357017e-48
MsaG003702	MsaG037914	0.802855	7.736969e-49	1.116111e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003702	MtrunA17_Chr1g0188681	90.769	130	12	0	1	130	1	130	3.90e-86	248
MsaG003702	MtrunA17_Chr5g0420351	73.643	129	34	0	1	129	1	129	4.83e-66	197
MsaG003702	MtrunA17_Chr1g0188661	76.154	130	31	0	1	130	1	130	1.06e-63	191
MsaG003702	MtrunA17_Chr7g0218151	74.615	130	33	0	1	130	1	130	3.89e-60	182
MsaG003702	MtrunA17_Chr4g0012761	73.077	130	35	0	1	130	1	130	1.05e-59	181
MsaG003702	MtrunA17_Chr1g0193311	70.769	130	38	0	1	130	1	130	4.89e-56	171
MsaG003702	MtrunA17_Chr1g0188651	70.769	130	36	1	1	130	1	128	5.29e-54	166
MsaG003702	MtrunA17_Chr1g0197321	59.504	121	49	0	1	121	1	121	1.43e-49	155
MsaG003702	MtrunA17_Chr1g0197261	56.923	130	56	0	1	130	1	130	1.85e-48	152
MsaG003702	MtrunA17_Chr1g0197461	57.812	128	54	0	3	130	2	129	8.08e-48	150
MsaG003702	MtrunA17_Chr4g0014321	42.975	121	68	1	1	120	1	121	2.09e-32	114
MsaG003702	MtrunA17_Chr3g0110131	55.372	121	53	1	1	120	1	121	5.95e-32	113
MsaG003702	MtrunA17_Chr4g0014031	51.240	121	58	1	1	120	1	121	4.67e-30	108
MsaG003702	MtrunA17_Chr4g0013041	41.270	126	71	2	1	125	1	124	7.53e-30	107
MsaG003702	MtrunA17_Chr3g0107331	43.750	128	71	1	3	129	2	129	9.95e-30	105
MsaG003702	MtrunA17_Chr3g0107381	45.312	128	69	1	1	127	1	128	1.01e-29	107
MsaG003702	MtrunA17_Chr8g0351751	41.985	131	73	1	1	128	1	131	4.80e-28	103
MsaG003702	MtrunA17_Chr3g0107351	42.188	128	73	1	3	129	2	129	1.52e-27	99.8
MsaG003702	MtrunA17_Chr5g0432691	36.154	130	82	1	1	129	1	130	3.49e-27	99.0
MsaG003702	MtrunA17_Chr2g0296831	44.628	121	66	1	1	120	1	121	5.13e-27	97.1
MsaG003702	MtrunA17_Chr3g0107361	47.273	110	57	1	3	111	2	111	1.08e-26	97.4
MsaG003702	MtrunA17_Chr2g0283941	43.697	119	66	1	1	118	1	119	1.81e-25	96.7
MsaG003702	MtrunA17_Chr3g0107341	39.844	128	76	1	3	129	2	129	3.34e-25	93.6
MsaG003702	MtrunA17_Chr4g0014131	49.587	121	60	1	1	120	1	121	1.05e-23	91.7
MsaG003702	MtrunA17_Chr3g0107461	41.803	122	68	2	1	119	1	122	1.08e-23	89.7
MsaG003702	MtrunA17_Chr4g0014121	44.186	129	71	1	1	128	29	157	2.46e-22	87.0
MsaG003702	MtrunA17_Chr4g0008701	35.000	120	74	2	1	116	1	120	1.08e-17	77.8
MsaG003702	MtrunA17_Chr2g0296861	36.170	94	59	1	1	93	1	94	9.00e-17	72.0
MsaG003702	MtrunA17_Chr7g0267601	32.174	115	77	1	3	116	6	120	1.51e-16	74.7
MsaG003702	MtrunA17_Chr3g0105791	41.414	99	55	2	29	125	1	98	1.10e-15	68.6
MsaG003702	MtrunA17_Chr4g0031421	38.776	98	59	1	29	125	1	98	3.85e-15	67.4
MsaG003702	MtrunA17_Chr3g0106501	35.714	98	62	1	29	125	1	98	1.27e-14	66.2
MsaG003702	MtrunA17_Chr3g0106421	36.275	102	62	2	29	127	1	102	3.08e-13	63.9
MsaG003702	MtrunA17_Chr6g0449861	31.858	113	69	3	1	106	9	120	2.51e-12	62.4
MsaG003702	MtrunA17_Chr3g0128721	29.204	113	79	1	3	114	6	118	2.61e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003702	AT1G65330.1	41.727	139	71	2	3	131	2	140	1.04e-29	108
MsaG003702	AT3G05860.2	43.548	124	69	1	1	123	1	124	3.87e-29	105
MsaG003702	AT3G05860.3	47.273	110	57	1	1	109	1	110	1.30e-28	105
MsaG003702	AT3G05860.1	47.273	110	57	1	1	109	1	110	2.03e-28	104
MsaG003702	AT5G48670.1	53.097	113	52	1	1	112	1	113	1.65e-27	103
MsaG003702	AT1G65300.1	41.441	111	64	1	3	112	2	112	2.16e-27	102
MsaG003702	AT5G26630.1	45.238	126	68	1	1	125	1	126	6.85e-26	97.4
MsaG003702	AT5G26650.1	45.794	107	57	1	4	109	2	108	6.95e-26	100
MsaG003702	AT5G27960.1	43.925	107	59	1	4	109	2	108	7.87e-25	96.7
MsaG003702	AT1G31630.1	36.937	111	68	2	3	112	2	111	1.32e-21	88.2
MsaG003702	AT1G31640.1	40.870	115	66	2	3	116	2	115	2.13e-20	85.9
MsaG003702	AT1G22590.2	33.043	115	76	1	1	114	1	115	1.23e-19	79.7
MsaG003702	AT5G27810.1	44.086	93	51	1	29	120	1	93	2.13e-19	78.2
MsaG003702	AT2G28700.1	37.190	121	75	1	1	120	1	121	5.32e-19	81.3
MsaG003702	AT5G26580.1	39.450	109	53	1	1	109	1	96	3.61e-18	79.0
MsaG003702	AT2G40210.1	36.923	130	77	2	1	127	1	128	7.29e-16	72.8
MsaG003702	AT5G06500.1	34.109	129	82	2	1	127	1	128	8.87e-15	68.6
MsaG003702	AT5G58890.1	31.532	111	68	3	1	104	1	110	5.22e-11	58.9

Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTGCAAAAGAAAACTTTCT+TGG	0.221526	1:+60846794	None:intergenic
CCAAGAGTTGCCTGATGATT+TGG	0.265725	1:-60846680	MsaT003702.1:CDS
AGCCTTTCTTGCCGAATCAT+TGG	0.368149	1:+60847011	None:intergenic
TGTATGGCTCCCTCTAGATT+TGG	0.415378	1:+60846871	None:intergenic
CTCCAATGATTCGGCAAGAA+AGG	0.422860	1:-60847013	MsaT003702.1:CDS
CCAAATCATCAGGCAACTCT+TGG	0.424898	1:+60846680	None:intergenic
AATCAGAATACCAAATCATC+AGG	0.453928	1:+60846670	None:intergenic
AGAGAGCTCTCTATTCTTTG+TGG	0.458868	1:-60846949	MsaT003702.1:CDS
AAATCTAGAGGGAGCCATAC+AGG	0.466931	1:-60846869	MsaT003702.1:CDS
TTTCACCTTCTTCCTAGTCA+TGG	0.474514	1:+60847047	None:intergenic
AAAGAAGGGTATCATTAAGA+AGG	0.475254	1:-60846974	MsaT003702.1:CDS
TGTTATAGAATCAAACGGAT+TGG	0.483520	1:+60846903	None:intergenic
ATACCTCTCAATCACCTGTA+TGG	0.492173	1:+60846855	None:intergenic
GCAGCAGATTACTAAAACCA+GGG	0.508508	1:-60846776	MsaT003702.1:CDS
GAATGAGCTGGACATTCATA+TGG	0.511354	1:-60846719	MsaT003702.1:CDS
TGCAGCAGATTACTAAAACC+AGG	0.515480	1:-60846777	MsaT003702.1:CDS
TAGCTACAACAAGAGAAAGA+AGG	0.531524	1:-60846989	MsaT003702.1:CDS
ACCTCTGTTATAGAATCAAA+CGG	0.538136	1:+60846898	None:intergenic
CGGATTGGAAATTATAGCAC+AGG	0.556765	1:+60846918	None:intergenic
AGCTACAACAAGAGAAAGAA+GGG	0.560386	1:-60846988	MsaT003702.1:CDS
TCCGTTTGATTCTATAACAG+AGG	0.561391	1:-60846899	MsaT003702.1:CDS
ACAGAATAATGAGAATGAGC+TGG	0.567812	1:-60846731	MsaT003702.1:CDS
TTGGAAATTATAGCACAGGC+TGG	0.567823	1:+60846922	None:intergenic
AGAGGTGTGGCCAAATCTAG+AGG	0.598360	1:-60846881	MsaT003702.1:CDS
AGCTGGACATTCATATGGTT+AGG	0.635359	1:-60846714	MsaT003702.1:CDS
GAGCCATACAGGTGATTGAG+AGG	0.637552	1:-60846858	MsaT003702.1:CDS
GAGGTGTGGCCAAATCTAGA+GGG	0.655326	1:-60846880	MsaT003702.1:CDS
TTGATTCTATAACAGAGGTG+TGG	0.661112	1:-60846894	MsaT003702.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	60846672	60847067	60846672	ID=MsaG003702
Chr1	mRNA	60846672	60847067	60846672	ID=MsaT003702.1;Parent=MsaG003702
Chr1	exon	60846672	60847067	60846672	ID=MsaT003702.1.exon1;Parent=MsaT003702.1
Chr1	CDS	60846672	60847067	60846672	ID=cds.MsaT003702.1;Parent=MsaT003702.1

Gene Sequence

>MsaT003702.1

ATGACTAGGAAGAAGGTGAAACTTGCTTTTATCTCCAATGATTCGGCAAGAAAGGCTAGCTACAACAAGAGAAAGAAGGGTATCATTAAGAAGGTGAGAGAGCTCTCTATTCTTTGTGGTATTCCAGCCTGTGCTATAATTTCCAATCCGTTTGATTCTATAACAGAGGTGTGGCCAAATCTAGAGGGAGCCATACAGGTGATTGAGAGGTATCAAAATGCATATATCAAACACAAGAAAAATAATGTGAACCAAGAAAGTTTTCTTTTGCAGCAGATTACTAAAACCAGGGAACAACTAGAAAAGCAAAGACAACAGAATAATGAGAATGAGCTGGACATTCATATGGTTAGGCACTTGCAAAACCAAGAGTTGCCTGATGATTTGGTATTCTGA

Protein sequence

>MsaT003702.1

MTRKKVKLAFISNDSARKASYNKRKKGIIKKVRELSILCGIPACAIISNPFDSITEVWPNLEGAIQVIERYQNAYIKHKKNNVNQESFLLQQITKTREQLEKQRQQNNENELDIHMVRHLQNQELPDDLVF*