AlfalfaGEDB | MsaG003721

M. sativa ssp. caerulea / MsaG003721

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003721	XP_039684757.1	94.757	267	8	5	1	266	1	262	1.74e-180	507

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003721	sp\|Q8LAP8\|DOF46_ARATH	37.685	337	133	13	1	266	11	341	1.05e-45	159

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003721	tr\|A0A072VMR5\|A0A072VMR5_MEDTR	94.757	267	8	5	1	266	11	272	1.57e-180	506

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003721	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG003721	0.838059	6.615088e-57	2.430615e-54
MsaG000113	MsaG003721	0.845082	9.504297e-59	4.367007e-56
MsaG000127	MsaG003721	0.860964	2.817844e-63	2.272636e-60
MsaG000128	MsaG003721	0.844380	1.465793e-58	6.580757e-56
MsaG000138	MsaG003721	0.854331	2.549458e-61	1.608300e-58
MsaG000140	MsaG003721	0.892062	4.976916e-74	1.634950e-70
MsaG000151	MsaG003721	0.802868	7.689276e-49	1.109584e-46
MsaG000153	MsaG003721	0.878892	4.082771e-69	7.002579e-66
MsaG000235	MsaG003721	0.828828	1.296198e-54	3.627845e-52
MsaG000243	MsaG003721	0.817456	5.686076e-52	1.170302e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003721	MtrunA17_Chr1g0188851	94.757	267	8	5	1	266	11	272	0.0	506
MsaG003721	MtrunA17_Chr3g0127201	44.828	290	103	14	21	266	14	290	2.47e-59	190
MsaG003721	MtrunA17_Chr8g0346551	44.211	285	110	14	12	266	4	269	2.66e-58	186
MsaG003721	MtrunA17_Chr2g0326001	73.611	72	19	0	17	88	23	94	6.53e-35	127
MsaG003721	MtrunA17_Chr3g0117601	34.333	300	135	15	16	265	41	328	2.62e-34	126
MsaG003721	MtrunA17_Chr4g0030051	46.715	137	66	2	16	145	23	159	1.36e-32	120
MsaG003721	MtrunA17_Chr8g0341671	67.089	79	22	2	16	94	5	79	1.43e-29	110
MsaG003721	MtrunA17_Chr8g0367161	66.667	72	24	0	23	94	21	92	1.58e-29	114
MsaG003721	MtrunA17_Chr4g0031411	66.667	72	18	1	31	96	72	143	4.83e-29	112
MsaG003721	MtrunA17_Chr1g0177251	57.292	96	31	2	28	115	6	99	6.65e-29	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003721	AT4G24060.1	37.685	337	133	13	1	266	11	341	1.06e-46	159
MsaG003721	AT3G61850.5	42.909	275	101	15	29	266	57	312	2.23e-46	157
MsaG003721	AT3G61850.2	42.636	258	98	14	29	266	57	284	3.50e-46	156
MsaG003721	AT3G61850.3	42.636	258	98	14	29	266	57	284	3.50e-46	156
MsaG003721	AT3G61850.4	42.909	275	101	15	29	266	69	324	4.46e-46	157
MsaG003721	AT3G61850.1	42.636	258	98	14	29	266	69	296	6.11e-46	156
MsaG003721	AT2G46590.1	39.871	311	112	16	21	266	57	357	2.00e-38	138
MsaG003721	AT2G46590.2	39.871	311	112	16	21	266	69	369	2.21e-38	138
MsaG003721	AT1G64620.1	36.795	337	126	14	1	259	11	338	3.67e-36	132
MsaG003721	AT5G60200.1	52.885	104	47	1	28	129	49	152	3.08e-33	122

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Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGCAATTAACTGTCCA+AGG	0.557523	1:+61086353	MsaT003721.1:CDS
AAGAGACAATTAGTGAAGGA+AGG	0.513089	1:+61086887	MsaT003721.1:CDS
AAGGCCAAGATCTAAATTTA+GGG	0.366987	1:+61086623	MsaT003721.1:CDS
AATAATAAGGAAGATCAACA+AGG	0.712044	1:+61086985	MsaT003721.1:CDS
ACAATATTGCCTTCTATTAA+TGG	0.125175	1:-61086271	None:intergenic
ACATGTTTCAAATCCTCAAA+AGG	0.498889	1:-61086919	None:intergenic
ACCAAATGATCAGATATGTG+AGG	0.628381	1:-61086649	None:intergenic
ACCAACAGGAATGTTTCTAA+TGG	0.426405	1:-61086479	None:intergenic
ACTGGAATGTTGGGAGGAGG+AGG	0.456613	1:+61087027	MsaT003721.1:CDS
ACTTGCTTAAAATCTTGCAA+AGG	0.603902	1:-61086796	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	61086262	61087062	61086262	ID=MsaG003721
Chr1	mRNA	61086262	61087062	61086262	ID=MsaT003721.1;Parent=MsaG003721
Chr1	exon	61086262	61087062	61086262	ID=MsaT003721.1.exon1;Parent=MsaT003721.1
Chr1	CDS	61086262	61087062	61086262	ID=cds.MsaT003721.1;Parent=MsaT003721.1

Gene Sequence

>MsaT003721.1

ATGGTGAAGCCATTAATAGAAGGCAATATTGTAGTAGCAACAAATACATGTGAAAAACCTATGTTGGAAAGGAAGCCAAATCAACAGAAACAAGAAGCAATTAACTGTCCAAGGTGTAATTCAATTAACACAAAATTCTGTTACTACAACAACTATAGTTTGACACAACCAAGATATTTCTGCAAAACATGTAGAAGGTATTGGACTCAAGGTGGATCCATTAGAAACATTCCTGTTGGTGGTGGTTCTAGGAAAAACAACAAAAATAGATCTTCTAATTCTTCCAATTTTGTTTCAAATCCGTCACCTTCAACAAAAAACATACTTGATGAAAACCAAAACCATAAGATCCATCATGAAGAAGGCCAAGATCTAAATTTAGGGTTCCCTCACATATCTGATCATTTGGTTCAGCAAAATAACAACACTTCTTCTTCTACTTCTTCAGCATTGGAGCTTCTTACTGCAGGTTTGAGTTCAAGTTCAAGGGATTTGCATTCTTTCATGCCTGCTCAAGTTCAAGGTTGTGGATTTCCTTTGCAAGATTTTAAGCAAGTGCCAATGAATTTCTGTTTAGATGGGATCTCAGGAAGTGGTTATGCAAGTACTCTTGATCATGGTGTTCAAGAGACAATTAGTGAAGGAAGGGTTTTGTTTCCTTTTGAGGATTTGAAACATGTTTCTAGTACAAATAACCCAACAATATTGGATTTGGATCAGAATAATAATAAGGAAGATCAACAAGGATTTTCAACAGGGATTTGGACTGGAATGTTGGGAGGAGGAGGAGGATCATGGTAA

Protein sequence

>MsaT003721.1

MVKPLIEGNIVVATNTCEKPMLERKPNQQKQEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNNKNRSSNSSNFVSNPSPSTKNILDENQNHKIHHEEGQDLNLGFPHISDHLVQQNNNTSSSTSSALELLTAGLSSSSRDLHSFMPAQVQGCGFPLQDFKQVPMNFCLDGISGSGYASTLDHGVQETISEGRVLFPFEDLKHVSSTNNPTILDLDQNNNKEDQQGFSTGIWTGMLGGGGGSW*