AlfalfaGEDB | MsaG003726

M. sativa ssp. caerulea / MsaG003726

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003726	XP_013468858.1	81.443	194	22	2	1	180	1	194	1.26e-104	308

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003726	sp\|Q681X4\|ZAT5_ARATH	39.103	156	80	5	36	179	108	260	2.89e-22	93.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003726	tr\|A0A072VXX0\|A0A072VXX0_MEDTR	81.443	194	22	2	1	180	1	194	6.00e-105	308

TFs/TRs:

Gene ID	Type	Classification
MsaG003726	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000143	MsaG003726	0.835142	3.632688e-56	1.221983e-53
MsaG002050	MsaG003726	0.839414	2.965267e-57	1.136433e-54
MsaG002069	MsaG003726	0.870484	2.869918e-66	3.393667e-63
MsaG002678	MsaG003726	0.820787	1.000780e-52	2.247334e-50
MsaG003214	MsaG003726	0.843816	2.074115e-58	9.141744e-56
MsaG003726	MsaG004047	0.834750	4.555804e-56	1.514723e-53
MsaG003726	MsaG004528	0.844078	1.765975e-58	7.850263e-56
MsaG003726	MsaG005105	0.862001	1.365262e-63	1.145798e-60
MsaG003726	MsaG005451	0.805009	2.773731e-49	4.206046e-47
MsaG003726	MsaG006267	0.815027	1.973713e-51	3.817907e-49
MsaG003726	MsaG006994	0.807115	1.004430e-49	1.600338e-47
MsaG003726	MsaG007237	0.809866	2.616304e-50	4.453431e-48
MsaG003726	MsaG007314	0.819546	1.919103e-52	4.170298e-50
MsaG003726	MsaG007571	0.807626	7.835924e-50	1.263762e-47
MsaG003726	MsaG007744	0.804462	3.603164e-49	5.394765e-47
MsaG003726	MsaG008646	0.805835	1.864756e-49	2.882659e-47
MsaG003726	MsaG009078	0.802687	8.379490e-49	1.204162e-46
MsaG003726	MsaG011104	0.847827	1.708505e-59	8.602735e-57
MsaG003726	MsaG011117	0.816760	8.135209e-52	1.644652e-49
MsaG003726	MsaG016290	0.818310	3.654517e-52	7.688789e-50
MsaG003726	MsaG017440	0.804790	3.079657e-49	4.646270e-47
MsaG003726	MsaG017530	0.810705	1.727858e-50	3.001812e-48
MsaG003726	MsaG018078	0.820499	1.164270e-52	2.594715e-50
MsaG003726	MsaG021588	0.824540	1.352972e-53	3.360937e-51
MsaG003726	MsaG023413	0.813008	5.477426e-51	1.007192e-48
MsaG003726	MsaG024094	0.806699	1.229029e-49	1.939124e-47
MsaG003726	MsaG024684	0.831589	2.765194e-55	8.377668e-53
MsaG003726	MsaG027083	0.804962	2.837271e-49	4.297641e-47
MsaG003726	MsaG028106	0.809663	2.891737e-50	4.898185e-48
MsaG003726	MsaG028149	0.811432	1.204297e-50	2.129806e-48
MsaG003726	MsaG028230	0.915617	1.186124e-84	1.632191e-80
MsaG003726	MsaG028276	0.810543	1.872438e-50	3.240229e-48
MsaG003726	MsaG028814	0.804033	4.422107e-49	6.555783e-47
MsaG003726	MsaG029072	0.800830	2.006276e-48	2.763902e-46
MsaG003726	MsaG029414	0.826582	4.465450e-54	1.173607e-51
MsaG003726	MsaG029579	0.806152	1.600676e-49	2.493006e-47
MsaG003726	MsaG031043	0.816030	1.183350e-51	2.347944e-49
MsaG003726	MsaG032636	0.814822	2.189785e-51	4.214136e-49
MsaG003726	MsaG034179	0.836533	1.619231e-56	5.679072e-54
MsaG003726	MsaG035200	0.813815	3.648151e-51	6.845322e-49
MsaG003726	MsaG035404	0.816194	1.087611e-51	2.167119e-49
MsaG003726	MsaG036126	0.825778	6.920071e-54	1.778557e-51
MsaG003726	MsaG037871	0.806955	1.085973e-49	1.723686e-47
MsaG003726	MsaG043772	0.852702	7.448683e-61	4.434665e-58
MsaG003726	MsaG043754	0.802880	7.646223e-49	1.103675e-46
MsaG003726	MsaG043755	0.844750	1.167276e-58	5.304923e-56
MsaG003726	MsaG043926	0.841345	9.322369e-58	3.796613e-55
MsaG003726	MsaG045208	0.803955	4.589332e-49	6.791217e-47
MsaG003726	MsaG045342	0.801252	1.646747e-48	2.290270e-46
MsaG003726	MsaG045385	0.864402	2.487395e-64	2.294565e-61
MsaG003726	MsaG047066	0.827165	3.243595e-54	8.664650e-52
MsaG003726	MsaG007339	0.814515	2.560085e-51	4.888582e-49
MsaG003726	MsaG006462	0.805100	2.655715e-49	4.035510e-47
MsaG003726	MsaG011732	0.805593	2.095791e-49	3.221374e-47
MsaG003726	MsaG022889	0.801892	1.218906e-48	1.720165e-46
MsaG003726	MsaG023189	0.835270	3.373967e-56	1.139249e-53
MsaG003726	MsaG028903	0.820324	1.276830e-52	2.832541e-50
MsaG003726	MsaG030696	0.811895	9.560665e-51	1.710179e-48
MsaG003726	MsaG031976	0.849497	5.916403e-60	3.152247e-57
MsaG003726	MsaG037087	0.825199	9.473703e-54	2.396157e-51
MsaG003726	MsaG043047	0.813457	4.369339e-51	8.125171e-49
MsaG003726	MsaG046992	0.823527	2.332829e-53	5.637570e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003726	MtrunA17_Chr1g0188911	81.443	194	22	2	1	180	1	194	1.15e-108	308
MsaG003726	MtrunA17_Chr1g0188901	71.212	198	27	5	1	180	1	186	1.79e-75	224
MsaG003726	MtrunA17_Chr1g0197281	55.556	162	40	7	38	179	151	300	4.64e-45	152
MsaG003726	MtrunA17_Chr4g0027991	35.220	159	73	4	42	179	112	261	4.77e-20	84.7
MsaG003726	MtrunA17_Chr2g0320311	38.217	157	75	7	40	179	126	277	1.73e-18	80.9
MsaG003726	MtrunA17_Chr7g0263121	36.691	139	52	5	43	177	44	150	3.45e-17	75.1
MsaG003726	MtrunA17_Chr7g0263131	37.681	138	53	5	43	177	34	141	3.67e-17	74.7
MsaG003726	MtrunA17_Chr1g0180311	36.774	155	85	5	36	179	113	265	4.53e-17	77.0
MsaG003726	MtrunA17_Chr1g0182161	35.252	139	57	4	43	177	39	148	9.00e-17	73.9
MsaG003726	MtrunA17_Chr4g0012791	31.220	205	113	6	1	179	177	379	1.31e-16	76.6
MsaG003726	MtrunA17_Chr1g0212561	42.857	98	33	2	42	139	44	118	1.42e-15	71.2
MsaG003726	MtrunA17_Chr1g0182181	35.507	138	57	5	43	177	35	143	1.04e-14	68.2
MsaG003726	MtrunA17_Chr4g0012691	43.299	97	39	3	43	139	220	300	9.59e-13	65.5
MsaG003726	MtrunA17_Chr4g0061301	34.615	156	68	7	43	180	348	487	2.94e-12	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003726	AT3G10470.1	39.344	183	59	8	38	179	177	348	3.11e-24	97.8
MsaG003726	AT2G28200.1	39.103	156	80	5	36	179	108	260	2.94e-23	93.6
MsaG003726	AT5G04390.1	36.898	187	81	7	24	179	136	316	1.46e-22	93.2
MsaG003726	AT5G03510.1	35.211	142	89	1	41	179	116	257	1.66e-18	81.3
MsaG003726	AT3G46090.1	37.143	140	54	5	42	176	39	149	7.88e-14	66.2
MsaG003726	AT2G37430.1	32.414	145	64	4	36	177	40	153	1.50e-13	65.9
MsaG003726	AT3G46080.1	41.584	101	33	4	41	141	35	109	3.11e-13	64.7
MsaG003726	AT2G45120.1	32.432	148	70	3	32	179	183	300	1.10e-12	65.1
MsaG003726	AT5G59820.1	37.755	98	30	1	42	139	38	104	2.77e-12	62.0
MsaG003726	AT1G02030.1	30.496	141	57	4	39	179	156	255	1.73e-11	61.6
MsaG003726	AT5G56200.1	34.951	103	59	4	43	143	342	438	2.63e-11	61.6

Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATTGATACTATTCAATTTA+AGG	0.113940	1:-61161203	None:intergenic
AACAACAAAACCAAGGTTTA+TGG	0.193686	1:+61161273	MsaT003726.1:CDS
AATGAATGTCTCTTTGGATT+TGG	0.240224	1:+61161440	MsaT003726.1:CDS
AAAGAAAATGAATGTCTCTT+TGG	0.284507	1:+61161434	MsaT003726.1:CDS
ATTGATACTATTCAATTTAA+GGG	0.301902	1:-61161202	None:intergenic
CATGAACAACAACTCTCTTT+AGG	0.379285	1:+61160955	MsaT003726.1:CDS
CTCGATGAGGTTGCCTCCAC+CGG	0.381070	1:-61161366	None:intergenic
GGTTCTTCATCTTCTTCGTC+TGG	0.390134	1:-61161405	None:intergenic
TTTGTTGTTGTTGGTGGTGG+TGG	0.394023	1:-61161259	None:intergenic
TGTGGTTCTAAATTCACATC+TGG	0.409768	1:+61161306	MsaT003726.1:CDS
ATTGAATAGTATCAATGGTA+TGG	0.411197	1:+61161209	MsaT003726.1:CDS
GCAATGATGGAGAAAGGAAT+AGG	0.411775	1:-61160997	None:intergenic
ACAACAAAACCAAGGTTTAT+GGG	0.414502	1:+61161274	MsaT003726.1:CDS
TTCACTTCATTTCAAGCACT+TGG	0.418538	1:+61161096	MsaT003726.1:CDS
CTTTGATCTGCTTAAGCTGC+AGG	0.428529	1:-61161474	None:intergenic
GTTTATGGGTGCACCATTTG+TGG	0.429212	1:+61161288	MsaT003726.1:CDS
CTTAAATTGAATAGTATCAA+TGG	0.429294	1:+61161204	MsaT003726.1:CDS
TCGTCTGGTTTCAAAGCCAT+TGG	0.468001	1:-61161390	None:intergenic
GTGCATGGTGGAAGGTCATA+TGG	0.468572	1:-61161344	None:intergenic
TTCACATCTGGCCAGGCACT+TGG	0.470440	1:+61161318	MsaT003726.1:CDS
TGTAGAAGAATAAGCAATGA+TGG	0.477070	1:-61161010	None:intergenic
GAATAAGCAATGATGGAGAA+AGG	0.483057	1:-61161003	None:intergenic
TCATATGGCCACCAAGTGCC+TGG	0.495422	1:-61161329	None:intergenic
TGTGAATTTAGAACCACAAA+TGG	0.504130	1:-61161301	None:intergenic
CTTCCACCATGCACCGGTGG+AGG	0.506143	1:+61161353	MsaT003726.1:CDS
TTGAATAGTATCAATGGTAT+GGG	0.515059	1:+61161210	MsaT003726.1:CDS
ACTTCATTTCAAGCACTTGG+AGG	0.520190	1:+61161099	MsaT003726.1:CDS
GCTTATTCTTCTACAAGAGA+AGG	0.522956	1:+61161018	MsaT003726.1:CDS
ACATCTGGCCAGGCACTTGG+TGG	0.529943	1:+61161321	MsaT003726.1:CDS
TTCTAAATTCACATCTGGCC+AGG	0.531142	1:+61161311	MsaT003726.1:CDS
GAAGCGTAGAGATGATTGTC+AGG	0.534463	1:+61161140	MsaT003726.1:CDS
CTCCACCGGTGCATGGTGGA+AGG	0.537215	1:-61161352	None:intergenic
AGGTTGCCTCCACCGGTGCA+TGG	0.568155	1:-61161359	None:intergenic
AATGGTGCACCCATAAACCT+TGG	0.579571	1:-61161283	None:intergenic
TATGACCTTCCACCATGCAC+CGG	0.585865	1:+61161347	MsaT003726.1:CDS
CAAAGCCATTGGTCTCGATG+AGG	0.605389	1:-61161379	None:intergenic
GGCAACCTCATCGAGACCAA+TGG	0.607582	1:+61161374	MsaT003726.1:CDS
GACCTTCCACCATGCACCGG+TGG	0.615351	1:+61161350	MsaT003726.1:CDS
GATCTGCTTAAGCTGCAGGA+AGG	0.638172	1:-61161470	None:intergenic
TTGCCTCCACCGGTGCATGG+TGG	0.647313	1:-61161356	None:intergenic
CACCAACAACAACAAAACCA+AGG	0.686342	1:+61161266	MsaT003726.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	61160943	61161485	61160943	ID=MsaG003726
Chr1	mRNA	61160943	61161485	61160943	ID=MsaT003726.1;Parent=MsaG003726
Chr1	exon	61160943	61161485	61160943	ID=MsaT003726.1.exon1;Parent=MsaT003726.1
Chr1	CDS	61160943	61161485	61160943	ID=cds.MsaT003726.1;Parent=MsaT003726.1

Gene Sequence

>MsaT003726.1

ATGGAAGCATCTCATGAACAACAACTCTCTTTAGGCTCTATAGAACAACAATCTCCTATTCCTTTCTCCATCATTGCTTATTCTTCTACAAGAGAAGGAACAAAAGAAAGTGCACGTTACAATGTGTATGCGTGCAAAACATGCAAGAAAACTTTCACTTCATTTCAAGCACTTGGAGGCCATAGAAAAGTTCACAAGAAGCGTAGAGATGATTGTCAGGTTCAAGAGTTTCAATTCAAAATCAATAATAAATCAATTTCCCTTAAATTGAATAGTATCAATGGTATGGGAAATATATATGCTAGCAGCAACAACACCACCACCACCAACAACAACAAAACCAAGGTTTATGGGTGCACCATTTGTGGTTCTAAATTCACATCTGGCCAGGCACTTGGTGGCCATATGACCTTCCACCATGCACCGGTGGAGGCAACCTCATCGAGACCAATGGCTTTGAAACCAGACGAAGAAGATGAAGAACCACCTACAAAGAAAATGAATGTCTCTTTGGATTTGGATCTCAACCTTCCTGCAGCTTAA

Protein sequence

>MsaT003726.1

MEASHEQQLSLGSIEQQSPIPFSIIAYSSTREGTKESARYNVYACKTCKKTFTSFQALGGHRKVHKKRRDDCQVQEFQFKINNKSISLKLNSINGMGNIYASSNNTTTTNNNKTKVYGCTICGSKFTSGQALGGHMTFHHAPVEATSSRPMALKPDEEDEEPPTKKMNVSLDLDLNLPAA*