Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003757 | XP_013468886.1 | 98.213 | 1231 | 22 | 0 | 1 | 1231 | 1 | 1231 | 0.0 | 2516 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003757 | sp|C0SUT9|JMJ16_ARATH | 55.139 | 1255 | 481 | 22 | 5 | 1226 | 1 | 1206 | 0.0 | 1235 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003757 | tr|A0A072VNF4|A0A072VNF4_MEDTR | 98.213 | 1231 | 22 | 0 | 1 | 1231 | 1 | 1231 | 0.0 | 2516 |
Gene ID | Type | Classification |
---|---|---|
MsaG003757 | TR | Jumonji |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003757 | MtrunA17_Chr1g0189211 | 98.213 | 1231 | 22 | 0 | 1 | 1231 | 1 | 1231 | 0.0 | 2516 |
MsaG003757 | MtrunA17_Chr8g0380981 | 56.661 | 563 | 237 | 2 | 132 | 690 | 25 | 584 | 0.0 | 657 |
MsaG003757 | MtrunA17_Chr8g0380981 | 33.613 | 238 | 130 | 4 | 1018 | 1227 | 816 | 1053 | 1.33e-32 | 137 |
MsaG003757 | MtrunA17_Chr7g0261401 | 47.989 | 696 | 323 | 9 | 20 | 697 | 3 | 677 | 0.0 | 654 |
MsaG003757 | MtrunA17_Chr2g0303101 | 56.610 | 590 | 248 | 4 | 125 | 712 | 27 | 610 | 0.0 | 653 |
MsaG003757 | MtrunA17_Chr2g0303101 | 36.929 | 241 | 140 | 3 | 998 | 1227 | 762 | 1001 | 4.11e-35 | 145 |
MsaG003757 | MtrunA17_Chr5g0397501 | 40.380 | 421 | 210 | 7 | 259 | 670 | 295 | 683 | 1.65e-88 | 314 |
MsaG003757 | MtrunA17_Chr5g0397501 | 58.108 | 74 | 27 | 1 | 145 | 218 | 23 | 92 | 1.15e-17 | 89.4 |
MsaG003757 | MtrunA17_Chr5g0410721 | 28.349 | 642 | 349 | 19 | 67 | 683 | 4 | 559 | 2.19e-59 | 220 |
MsaG003757 | MtrunA17_Chr1g0164731 | 29.705 | 542 | 280 | 16 | 147 | 670 | 42 | 500 | 3.43e-51 | 191 |
MsaG003757 | MtrunA17_Chr3g0116441 | 33.773 | 379 | 169 | 12 | 150 | 512 | 18 | 330 | 1.31e-50 | 196 |
MsaG003757 | MtrunA17_Chr1g0164761 | 27.273 | 616 | 327 | 17 | 148 | 748 | 6 | 515 | 2.06e-44 | 170 |
MsaG003757 | MtrunA17_Chr1g0199511 | 43.784 | 185 | 91 | 2 | 361 | 537 | 295 | 474 | 5.09e-39 | 159 |
MsaG003757 | MtrunA17_Chr7g0214951 | 38.760 | 129 | 62 | 5 | 371 | 497 | 88 | 201 | 3.09e-14 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG003757 | AT1G08620.3 | 55.096 | 1256 | 482 | 22 | 4 | 1226 | 14 | 1220 | 0.0 | 1235 |
MsaG003757 | AT1G08620.2 | 55.139 | 1255 | 481 | 22 | 5 | 1226 | 1 | 1206 | 0.0 | 1235 |
MsaG003757 | AT1G08620.4 | 55.139 | 1255 | 481 | 22 | 5 | 1226 | 1 | 1206 | 0.0 | 1235 |
MsaG003757 | AT1G08620.1 | 55.139 | 1255 | 481 | 22 | 5 | 1226 | 1 | 1206 | 0.0 | 1235 |
MsaG003757 | AT4G20400.1 | 57.428 | 552 | 229 | 4 | 132 | 680 | 38 | 586 | 0.0 | 664 |
MsaG003757 | AT4G20400.1 | 41.667 | 192 | 101 | 2 | 1018 | 1205 | 746 | 930 | 6.38e-38 | 155 |
MsaG003757 | AT1G30810.3 | 58.036 | 560 | 224 | 6 | 131 | 686 | 40 | 592 | 0.0 | 652 |
MsaG003757 | AT1G30810.3 | 48.299 | 147 | 70 | 2 | 1002 | 1148 | 648 | 788 | 6.10e-35 | 144 |
MsaG003757 | AT1G30810.2 | 58.036 | 560 | 224 | 6 | 131 | 686 | 40 | 592 | 0.0 | 652 |
MsaG003757 | AT1G30810.2 | 48.299 | 147 | 70 | 2 | 1002 | 1148 | 648 | 788 | 6.10e-35 | 144 |
MsaG003757 | AT1G30810.1 | 58.036 | 560 | 224 | 6 | 131 | 686 | 40 | 592 | 0.0 | 652 |
MsaG003757 | AT1G30810.1 | 48.299 | 147 | 70 | 2 | 1002 | 1148 | 648 | 788 | 6.10e-35 | 144 |
MsaG003757 | AT4G20400.2 | 57.414 | 526 | 218 | 4 | 158 | 680 | 7 | 529 | 0.0 | 626 |
MsaG003757 | AT4G20400.2 | 41.667 | 192 | 101 | 2 | 1018 | 1205 | 689 | 873 | 7.37e-38 | 154 |
MsaG003757 | AT2G34880.1 | 55.258 | 561 | 215 | 11 | 132 | 679 | 43 | 580 | 0.0 | 616 |
MsaG003757 | AT2G34880.1 | 45.333 | 150 | 78 | 1 | 1005 | 1154 | 636 | 781 | 2.17e-32 | 136 |
MsaG003757 | AT2G38950.1 | 42.815 | 682 | 320 | 12 | 5 | 683 | 1 | 615 | 3.27e-168 | 516 |
MsaG003757 | AT1G63490.1 | 41.568 | 421 | 204 | 7 | 259 | 670 | 39 | 426 | 5.70e-94 | 328 |
MsaG003757 | AT1G63490.4 | 41.568 | 421 | 204 | 7 | 259 | 670 | 292 | 679 | 4.58e-93 | 329 |
MsaG003757 | AT1G63490.4 | 54.930 | 71 | 28 | 1 | 150 | 220 | 31 | 97 | 2.32e-15 | 82.4 |
MsaG003757 | AT1G63490.2 | 41.568 | 421 | 204 | 7 | 259 | 670 | 292 | 679 | 4.82e-93 | 329 |
MsaG003757 | AT1G63490.2 | 54.930 | 71 | 28 | 1 | 150 | 220 | 31 | 97 | 2.44e-15 | 82.4 |
MsaG003757 | AT5G46910.2 | 32.613 | 509 | 246 | 18 | 146 | 639 | 99 | 525 | 1.62e-58 | 214 |
MsaG003757 | AT5G46910.1 | 32.613 | 509 | 246 | 18 | 146 | 639 | 99 | 525 | 6.70e-58 | 215 |
MsaG003757 | AT3G48430.1 | 34.309 | 376 | 197 | 11 | 150 | 512 | 20 | 358 | 1.06e-45 | 181 |
MsaG003757 | AT1G63490.3 | 39.662 | 237 | 122 | 5 | 438 | 670 | 1 | 220 | 1.52e-42 | 169 |
MsaG003757 | AT5G04240.1 | 49.032 | 155 | 76 | 1 | 361 | 512 | 263 | 417 | 7.51e-41 | 165 |
Find 293 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATTACCTTCACTATTTC+TGG | 0.085763 | 1:+61515235 | None:intergenic |
CGTAAGATCTTTGCTATTAA+AGG | 0.127451 | 1:-61517062 | MsaT003757.1:CDS |
ACATACTTCTAGGTGCTTTA+TGG | 0.157721 | 1:-61521124 | MsaT003757.1:intron |
GAATTTGGAGTTGTGCTTTC+TGG | 0.173881 | 1:-61516309 | MsaT003757.1:CDS |
ACGTGGTTCGCCTCTATTTA+TGG | 0.180896 | 1:-61516076 | MsaT003757.1:intron |
GAGATATGCAGACGAGTTTA+AGG | 0.201979 | 1:-61521380 | MsaT003757.1:CDS |
AATGTTTCCAAGGTAAATTC+TGG | 0.245334 | 1:+61521406 | None:intergenic |
GAATAAAGTCCCCAGGGTTT+TGG | 0.264163 | 1:+61519533 | None:intergenic |
ACACTTCGGATAATCTAAAA+TGG | 0.273299 | 1:-61519291 | MsaT003757.1:CDS |
GATCTGGAAACTGGGAGTTT+TGG | 0.275624 | 1:-61521097 | MsaT003757.1:CDS |
CATCCTGCTGGCAGCCTTGA+TGG | 0.277204 | 1:-61515283 | MsaT003757.1:CDS |
CTACTGAGATATAAGAAGTT+AGG | 0.295203 | 1:+61517276 | None:intergenic |
TATAATTCAATGAATATAAA+TGG | 0.296555 | 1:+61520069 | None:intergenic |
TACAATGAGTTCAATTCTTC+CGG | 0.298568 | 1:+61514128 | None:intergenic |
CCAAAGGTGTGCCAGTTTAT+AGG | 0.298758 | 1:-61519561 | MsaT003757.1:CDS |
GAATTTGCTTGATCCACTAT+TGG | 0.299776 | 1:+61517155 | None:intergenic |
TTCATTGAATTATATGCATC+TGG | 0.305508 | 1:-61520060 | MsaT003757.1:CDS |
CCAACCTTCCAGCACTATTA+AGG | 0.311202 | 1:-61516502 | MsaT003757.1:CDS |
GTCGAGTTTGTCATGAATAC+TGG | 0.316021 | 1:-61514298 | MsaT003757.1:CDS |
GCTGGCCAGACCAGTGTAAA+TGG | 0.326405 | 1:-61514242 | MsaT003757.1:CDS |
GTGGTTCCTCATATGCTTGC+TGG | 0.327847 | 1:-61516843 | MsaT003757.1:CDS |
ACTTCACAAAATCCTGCATT+AGG | 0.330109 | 1:+61521454 | None:intergenic |
AATTAAGTGCAGTTTATAGA+TGG | 0.330862 | 1:-61517322 | MsaT003757.1:CDS |
TGCAAAAGATGCATGCAAAT+TGG | 0.331245 | 1:-61520009 | MsaT003757.1:CDS |
CTTAATAGTGCTGGAAGGTT+GGG | 0.335439 | 1:+61516503 | None:intergenic |
CCTTTCTGACGGGAATTGTT+TGG | 0.341322 | 1:+61516384 | None:intergenic |
AATGTTGAGCCTTTGGAATT+TGG | 0.347465 | 1:-61516324 | MsaT003757.1:CDS |
TACGAGCAGTACATAAAATC+TGG | 0.350384 | 1:-61521034 | MsaT003757.1:CDS |
TATGGAGCTGATCTGGAAAC+TGG | 0.355790 | 1:-61521106 | MsaT003757.1:CDS |
TGTGGTCTACGAGCATCTTC+TGG | 0.356321 | 1:+61521908 | None:intergenic |
CCTTTGCATGAGGTCATTGA+TGG | 0.356999 | 1:-61522823 | None:intergenic |
CAACTGCAATGTTGAGCCTT+TGG | 0.357071 | 1:-61516331 | MsaT003757.1:CDS |
CCGACTCGTCTCATTCTTCC+AGG | 0.358823 | 1:-61517214 | MsaT003757.1:CDS |
CTTGATGGCATCGAAATGTT+TGG | 0.361417 | 1:-61515268 | MsaT003757.1:CDS |
AGCAACAAAATGCTGGGATA+TGG | 0.363018 | 1:-61515374 | MsaT003757.1:CDS |
GCGGTGCTTCGTGAAGATTC+AGG | 0.363884 | 1:-61516723 | MsaT003757.1:CDS |
CTAAGAAGTATGATATCTTT+AGG | 0.371235 | 1:+61516915 | None:intergenic |
ACTGGGGTAGAAGGTATAAT+TGG | 0.374779 | 1:+61516645 | None:intergenic |
TATGAAACCAGTGATATATC+TGG | 0.375280 | 1:-61520965 | MsaT003757.1:CDS |
AAAGTCATGGTGCAGCATTC+AGG | 0.377547 | 1:-61516286 | MsaT003757.1:CDS |
CCTTTGGACTTAAGAATAGA+AGG | 0.379081 | 1:+61519577 | None:intergenic |
CATCCTCTGAGGACTCCTTT+AGG | 0.379777 | 1:+61522349 | None:intergenic |
TTTGTGAAGTTGAAACATTT+GGG | 0.380131 | 1:-61521441 | MsaT003757.1:CDS |
GAAAGATCTACTGGGGTAGA+AGG | 0.389159 | 1:+61516636 | None:intergenic |
CCTTTGCACTATCACTCAAT+TGG | 0.389769 | 1:+61522607 | None:intergenic |
CCTATAAACTGGCACACCTT+TGG | 0.390004 | 1:+61519561 | None:intergenic |
GTTCTCCACAGAAGGCTCTA+AGG | 0.393810 | 1:+61521294 | None:intergenic |
AGCAATTGTGTTCATGCTCT+TGG | 0.396351 | 1:-61517415 | MsaT003757.1:CDS |
ATTTCAGAAATTCTTGATGC+TGG | 0.398808 | 1:-61516099 | MsaT003757.1:CDS |
GATAATCATGAGAGGTTTGA+TGG | 0.404141 | 1:-61516468 | MsaT003757.1:CDS |
GGTGGGTGTGTGCTGATTCA+TGG | 0.407700 | 1:+61514193 | None:intergenic |
GGTGGAGGTGGAAGTGATCA+AGG | 0.407845 | 1:-61514221 | MsaT003757.1:CDS |
GGTGCTTTATGGAGCTGATC+TGG | 0.412536 | 1:-61521113 | MsaT003757.1:CDS |
CTCATGATAAGCTATTGCTT+GGG | 0.417910 | 1:-61519366 | MsaT003757.1:CDS |
TCTTGATTGAATTCACAAAC+AGG | 0.420350 | 1:+61517005 | None:intergenic |
CGCTCCAGAGCTGAACCATA+TGG | 0.422499 | 1:-61521694 | MsaT003757.1:CDS |
ATATGAAAAGAAAGATCTAC+TGG | 0.426723 | 1:+61516627 | None:intergenic |
TTGTGGAAAAGACGGTCTTT+TGG | 0.428369 | 1:-61519260 | MsaT003757.1:CDS |
ATCGATCACCTAGGGTGGTT+GGG | 0.430189 | 1:+61514028 | None:intergenic |
CAGTCAACTCAGGTTGGAAA+TGG | 0.432685 | 1:-61522633 | MsaT003757.1:CDS |
AAATATTCTTGTTGAGGCAT+TGG | 0.435779 | 1:-61517351 | MsaT003757.1:CDS |
CAAGGGCAGCTTTCACAAGC+TGG | 0.435829 | 1:-61514260 | MsaT003757.1:CDS |
CCTTAATAGTGCTGGAAGGT+TGG | 0.436594 | 1:+61516502 | None:intergenic |
TCTTCAGTGGGGTAGAAAAC+AGG | 0.437666 | 1:+61521872 | None:intergenic |
ACAAGAATGGGAGTGGATAA+TGG | 0.438444 | 1:-61521490 | MsaT003757.1:CDS |
TTTCTTTAATCAGGCTATTG+AGG | 0.440771 | 1:-61514333 | MsaT003757.1:intron |
TTAATGTAGCTCCCGTTGAC+TGG | 0.442935 | 1:-61519450 | MsaT003757.1:CDS |
AATAACTTTGCAAGGTTACC+AGG | 0.445094 | 1:-61521001 | MsaT003757.1:CDS |
CTCATTATTCACATTGCTCC+TGG | 0.445885 | 1:+61517196 | None:intergenic |
CTCGTATTGCAAAGGTTGTC+CGG | 0.447988 | 1:-61516359 | MsaT003757.1:CDS |
GATAGCAAAACAGTTTAAGC+TGG | 0.448678 | 1:-61515329 | MsaT003757.1:CDS |
GGGACTTCCGTCGGCCTCAA+GGG | 0.449299 | 1:-61514277 | MsaT003757.1:CDS |
TCGGGCAGGTCATTGCTAGA+TGG | 0.451167 | 1:-61521934 | MsaT003757.1:intron |
ATGTTTCCAAGGTAAATTCT+GGG | 0.454986 | 1:+61521407 | None:intergenic |
CAGTTTAAGCTGGGAAGAAA+AGG | 0.457029 | 1:-61515319 | MsaT003757.1:CDS |
ACAGGAGCATTCTCAATTTG+TGG | 0.457135 | 1:+61521890 | None:intergenic |
TACTGAGATATAAGAAGTTA+GGG | 0.459115 | 1:+61517277 | None:intergenic |
TTAATAGTGCTGGAAGGTTG+GGG | 0.459758 | 1:+61516504 | None:intergenic |
GACAATGCAAGAGCTGTTAA+CGG | 0.461353 | 1:-61516423 | MsaT003757.1:CDS |
CGCTAATATCATAACGAAAG+AGG | 0.463912 | 1:+61517378 | None:intergenic |
CTCCACCATTTACACTGGTC+TGG | 0.464172 | 1:+61514237 | None:intergenic |
TGATGGGGACCGAGCTTATG+AGG | 0.464713 | 1:-61522806 | MsaT003757.1:CDS |
CACAGATAGATATGCTTGCT+TGG | 0.465453 | 1:-61517447 | MsaT003757.1:CDS |
AGATGTCAGATTCAAATAGA+AGG | 0.468081 | 1:-61516869 | MsaT003757.1:CDS |
ATTGGGATCTGTTCAGCCGC+TGG | 0.469647 | 1:+61514083 | None:intergenic |
CTTCCTCCTTTACATCCTGC+TGG | 0.470795 | 1:-61515295 | MsaT003757.1:CDS |
GAAACATTTGGGTTTGAACC+TGG | 0.471947 | 1:-61521430 | MsaT003757.1:CDS |
GTGACAGATGCTTCTGTGAC+GGG | 0.472904 | 1:-61516762 | MsaT003757.1:CDS |
TTTCCTCGAGCCTACCACTC+TGG | 0.473140 | 1:-61519505 | MsaT003757.1:CDS |
GTTCTTAGCCTTAATAGTGC+TGG | 0.474222 | 1:+61516494 | None:intergenic |
CTAGAACCAGCAAGCATATG+AGG | 0.475030 | 1:+61516837 | None:intergenic |
ACCAGCTTATGAAGCAAGTC+AGG | 0.476038 | 1:+61519942 | None:intergenic |
AAGGAGAAGATGCACAAGAA+TGG | 0.478896 | 1:-61521503 | MsaT003757.1:CDS |
ATATGTCAGCAACAAAATGC+TGG | 0.483599 | 1:-61515381 | MsaT003757.1:CDS |
TATAGAGCTGTACCGGGAGC+AGG | 0.483687 | 1:-61519407 | MsaT003757.1:CDS |
TCCAAGGTAAATTCTGGGCC+AGG | 0.485498 | 1:+61521412 | None:intergenic |
AACCGCTATCGCACTTTCCA+TGG | 0.488021 | 1:+61522550 | None:intergenic |
TCCCTAGGCACGTGTTGAGA+TGG | 0.488807 | 1:-61517606 | MsaT003757.1:intron |
TGGGACTTCCGTCGGCCTCA+AGG | 0.488914 | 1:-61514278 | MsaT003757.1:CDS |
GCATCTGCTCTTGTAGAAGC+TGG | 0.489750 | 1:+61516570 | None:intergenic |
GATGCTGCATTCCCTTTCAC+TGG | 0.491538 | 1:+61517514 | None:intergenic |
CCATGTGGAAGCCAGTCAAC+GGG | 0.493014 | 1:+61519439 | None:intergenic |
AGCTATTGCTTGGGGCTGCT+AGG | 0.493060 | 1:-61519357 | MsaT003757.1:CDS |
ACAATACGGCAGATTCCATA+TGG | 0.494785 | 1:+61521679 | None:intergenic |
TACCACTCTGGGTTCAATTG+TGG | 0.495819 | 1:-61519493 | MsaT003757.1:CDS |
AAAATAATATGAAAAGGAAA+AGG | 0.496493 | 1:-61521522 | MsaT003757.1:CDS |
TTCCTCGAGCCTACCACTCT+GGG | 0.496688 | 1:-61519504 | MsaT003757.1:CDS |
ACCTGACTTGCTTCATAAGC+TGG | 0.496715 | 1:-61519943 | MsaT003757.1:intron |
AGAACATTGAGGGTGAATAC+TGG | 0.497381 | 1:-61521276 | MsaT003757.1:CDS |
CGGCGGTGATAAAGCATATG+AGG | 0.497390 | 1:+61516977 | None:intergenic |
CTTTGCATGAGGTCATTGAT+GGG | 0.497772 | 1:-61522822 | None:intergenic |
AGGAGAAGATGCACAAGAAT+GGG | 0.499164 | 1:-61521502 | MsaT003757.1:CDS |
AATCGATCACCTAGGGTGGT+TGG | 0.501638 | 1:+61514027 | None:intergenic |
GGAATTTAAATAACTTTGCA+AGG | 0.501860 | 1:-61521009 | MsaT003757.1:CDS |
GATGGGCAAAATTAGACCTT+GGG | 0.502818 | 1:-61517304 | MsaT003757.1:CDS |
TCTCATGATAAGCTATTGCT+TGG | 0.503200 | 1:-61519367 | MsaT003757.1:CDS |
ATTAAGTGCAGTTTATAGAT+GGG | 0.503880 | 1:-61517321 | MsaT003757.1:CDS |
CTAAAATGGAAAGATGTTTG+TGG | 0.503920 | 1:-61519277 | MsaT003757.1:CDS |
GCTATTGCTTGGGGCTGCTA+GGG | 0.503959 | 1:-61519356 | MsaT003757.1:CDS |
ATATTGCTATAGAGCTGTAC+CGG | 0.504818 | 1:-61519414 | MsaT003757.1:CDS |
TAATCCATCTTCTTCGTCGA+AGG | 0.506262 | 1:+61522574 | None:intergenic |
CAGTACTGCAACAGCTCCGG+TGG | 0.508016 | 1:+61514175 | None:intergenic |
AGCCATCTCACACGTAGGTA+TGG | 0.509185 | 1:+61517088 | None:intergenic |
AGATGGGCAAAATTAGACCT+TGG | 0.509421 | 1:-61517305 | MsaT003757.1:CDS |
TTTGACAGATGTTCCAATAG+TGG | 0.510658 | 1:-61517168 | MsaT003757.1:CDS |
TCTATCTGTGGAACAGTGAC+AGG | 0.513239 | 1:+61517460 | None:intergenic |
ATTTCTCTGCAGTTCTTCAA+AGG | 0.513564 | 1:-61517567 | MsaT003757.1:CDS |
ACCAGTGTAAATGGTGGAGG+TGG | 0.513681 | 1:-61514233 | MsaT003757.1:CDS |
GATCCCTTCGACGAAGAAGA+TGG | 0.514849 | 1:-61522578 | MsaT003757.1:CDS |
GGTGAAAGTACCATAAATAG+AGG | 0.514863 | 1:+61516066 | None:intergenic |
GATTCCATATGGTTCAGCTC+TGG | 0.515067 | 1:+61521690 | None:intergenic |
AGTGACAGGCAGCAGCAGAT+AGG | 0.515405 | 1:+61517474 | None:intergenic |
ATATGAATGAAAACCTCCCT+TGG | 0.515694 | 1:+61515400 | None:intergenic |
TCATAAGAGAGCAGAGATCC+TGG | 0.517816 | 1:+61520983 | None:intergenic |
CTTCAGTACTGCAACAGCTC+CGG | 0.518315 | 1:+61514172 | None:intergenic |
GTCACAGAAGCATCTGTCAC+AGG | 0.518594 | 1:+61516765 | None:intergenic |
TGAGATGGAGCGGGTAAGAA+GGG | 0.519970 | 1:-61517591 | MsaT003757.1:CDS |
TTGAGATGGAGCGGGTAAGA+AGG | 0.520449 | 1:-61517592 | MsaT003757.1:CDS |
ACCTGGCCCAGAATTTACCT+TGG | 0.522610 | 1:-61521413 | MsaT003757.1:CDS |
ATGGGAGTGGATAATGGCAC+TGG | 0.522790 | 1:-61521484 | MsaT003757.1:CDS |
CGAACTAAATATTCTTGTTG+AGG | 0.522912 | 1:-61517357 | MsaT003757.1:CDS |
AGGCTGCCAGCAGGATGTAA+AGG | 0.525653 | 1:+61515289 | None:intergenic |
GAAATTCTTGATGCTGGACG+TGG | 0.526135 | 1:-61516093 | MsaT003757.1:CDS |
CCTTCTATTCTTAAGTCCAA+AGG | 0.529594 | 1:-61519577 | MsaT003757.1:CDS |
GGATTCAAAATAATATGAAA+AGG | 0.530544 | 1:-61521528 | MsaT003757.1:CDS |
TCAGCAAAGTAATCTCCCAC+TGG | 0.533185 | 1:+61519320 | None:intergenic |
AAGTCTTACGCCCCTGCTCC+CGG | 0.533537 | 1:+61519395 | None:intergenic |
CCCTCAATGTTCTCCACAGA+AGG | 0.534758 | 1:+61521286 | None:intergenic |
GTGGAGGTGGAAGTGATCAA+GGG | 0.537026 | 1:-61514220 | MsaT003757.1:CDS |
ATTCTTGTTGAGGCATTGGA+AGG | 0.540387 | 1:-61517347 | MsaT003757.1:CDS |
GGCAAAATTAGACCTTGGGC+TGG | 0.540388 | 1:-61517300 | MsaT003757.1:CDS |
TCGAGACCTTGTCTTCCTAA+AGG | 0.541010 | 1:-61522364 | MsaT003757.1:CDS |
TCAAAACCCGGTGGAACTGA+CGG | 0.542029 | 1:+61522756 | None:intergenic |
CCTTCTGTGGAGAACATTGA+GGG | 0.542353 | 1:-61521286 | MsaT003757.1:CDS |
TATAGGTGTGTCCAAAACCC+TGG | 0.542698 | 1:-61519544 | MsaT003757.1:CDS |
AAAATTGCTGTATTAGCACT+TGG | 0.543740 | 1:+61521325 | None:intergenic |
GTGGGTGTGTGCTGATTCAT+GGG | 0.544169 | 1:+61514194 | None:intergenic |
GTGACCTCAATTTCTTCAGT+AGG | 0.545384 | 1:+61521238 | None:intergenic |
GAATCACAGTCAACTCAGGT+TGG | 0.545907 | 1:-61522639 | MsaT003757.1:CDS |
ATGCCATCAAGGCTGCCAGC+AGG | 0.547470 | 1:+61515280 | None:intergenic |
ATAGGTGTGTCCAAAACCCT+GGG | 0.549131 | 1:-61519543 | MsaT003757.1:CDS |
ATAGAGCTGTACCGGGAGCA+GGG | 0.549215 | 1:-61519406 | MsaT003757.1:CDS |
TTCAGGTAACTGCTTTCTCA+TGG | 0.551566 | 1:+61519980 | None:intergenic |
TGTCCTTACCCAACAAAATG+AGG | 0.552174 | 1:+61520904 | None:intergenic |
GTAGTGCCATGGTTGTATAT+AGG | 0.552380 | 1:-61520938 | MsaT003757.1:CDS |
GGAAGCAGTACGAGCCCAGT+GGG | 0.554824 | 1:-61519335 | MsaT003757.1:CDS |
CCAAACAATTCCCGTCAGAA+AGG | 0.556450 | 1:-61516384 | MsaT003757.1:CDS |
CCCGTTGACTGGCTTCCACA+TGG | 0.556697 | 1:-61519439 | MsaT003757.1:CDS |
CTCCATACCTACGTGTGAGA+TGG | 0.557699 | 1:-61517090 | MsaT003757.1:CDS |
AGCAAATTCTGCAAATAGCA+AGG | 0.558046 | 1:-61517141 | MsaT003757.1:CDS |
TCACAAAACCCAACCACCCT+AGG | 0.559107 | 1:-61514036 | None:intergenic |
TGTGACAGATGCTTCTGTGA+CGG | 0.559586 | 1:-61516763 | MsaT003757.1:CDS |
TCATTGAATTATATGCATCT+GGG | 0.560710 | 1:-61520059 | MsaT003757.1:CDS |
AATGTTAGAATAAAGTCCCC+AGG | 0.560998 | 1:+61519526 | None:intergenic |
AGATGCATGCAAATTGGAAG+AGG | 0.562156 | 1:-61520003 | MsaT003757.1:CDS |
TATGTCAGCAACAAAATGCT+GGG | 0.562554 | 1:-61515380 | MsaT003757.1:CDS |
AAGATGCACAAGAATGGGAG+TGG | 0.562719 | 1:-61521497 | MsaT003757.1:CDS |
AATTCACAAACAGGGACACT+CGG | 0.563265 | 1:+61517014 | None:intergenic |
GAAACTTGACTAGACTTGCT+AGG | 0.565216 | 1:+61521064 | None:intergenic |
TGTTTGTGAATTCAATCAAG+AGG | 0.565218 | 1:-61517003 | MsaT003757.1:CDS |
ATATCTCTTAAATGTTTCCA+AGG | 0.567445 | 1:+61521396 | None:intergenic |
TACATCTTTCGCACTGAAGA+GGG | 0.567635 | 1:-61522727 | MsaT003757.1:CDS |
CAACATTGCAGTTGATGCGC+CGG | 0.567962 | 1:+61516340 | None:intergenic |
AACACATATCCTCATAAGCT+CGG | 0.567984 | 1:+61522797 | None:intergenic |
ATAGCAAAACAGTTTAAGCT+GGG | 0.568094 | 1:-61515328 | MsaT003757.1:CDS |
AATCCATCTTCTTCGTCGAA+GGG | 0.569125 | 1:+61522575 | None:intergenic |
CATTCAGGCTATATTTCCAA+AGG | 0.569460 | 1:-61516271 | MsaT003757.1:CDS |
GAGTCCTACTGAAGAAATTG+AGG | 0.569540 | 1:-61521242 | MsaT003757.1:intron |
TAATAGTGCTGGAAGGTTGG+GGG | 0.571266 | 1:+61516505 | None:intergenic |
AAACTTCAGAATCGTAACTC+AGG | 0.572137 | 1:-61521565 | MsaT003757.1:CDS |
GGGAAGCAGTACGAGCCCAG+TGG | 0.572739 | 1:-61519336 | MsaT003757.1:CDS |
CAAACATTTCGATGCCATCA+AGG | 0.573152 | 1:+61515269 | None:intergenic |
TTTCCTTGGAAAATAATCCA+AGG | 0.574213 | 1:-61515417 | MsaT003757.1:CDS |
CAATACGAGGACCTTTCTGA+CGG | 0.576853 | 1:+61516373 | None:intergenic |
AGATTGCCGTAATTGCCAAA+AGG | 0.576897 | 1:-61522323 | MsaT003757.1:intron |
AAAGCTGCCCTTGAGGCCGA+CGG | 0.577930 | 1:+61514270 | None:intergenic |
TTGTGCTTTCTGGAAAGTCA+TGG | 0.580340 | 1:-61516299 | MsaT003757.1:CDS |
ACGAGCAGTACATAAAATCT+GGG | 0.580564 | 1:-61521033 | MsaT003757.1:CDS |
TCCATGTGGAAGCCAGTCAA+CGG | 0.581948 | 1:+61519438 | None:intergenic |
TCCACCTCCACCATTTACAC+TGG | 0.582141 | 1:+61514232 | None:intergenic |
CGAAGAAGATGGATTAACCA+TGG | 0.582944 | 1:-61522567 | MsaT003757.1:CDS |
ACAATTGAACCCAGAGTGGT+AGG | 0.583128 | 1:+61519495 | None:intergenic |
ATGAATCAGCACACACCCAC+CGG | 0.584252 | 1:-61514191 | MsaT003757.1:CDS |
ATTCAGGCTATATTTCCAAA+GGG | 0.585259 | 1:-61516270 | MsaT003757.1:intron |
ATTGTCTGCTACATTAGAAG+TGG | 0.585964 | 1:+61516440 | None:intergenic |
TTAGCCTTAATAGTGCTGGA+AGG | 0.587065 | 1:+61516498 | None:intergenic |
CAGGAGCAATGTGAATAATG+AGG | 0.587090 | 1:-61517195 | MsaT003757.1:CDS |
ATACATCTTTCGCACTGAAG+AGG | 0.587392 | 1:-61522728 | MsaT003757.1:CDS |
ATCTGAATCACAGTCAACTC+AGG | 0.588426 | 1:-61522643 | MsaT003757.1:CDS |
TGCTTCTGTGACGGGTGAGA+AGG | 0.589664 | 1:-61516754 | MsaT003757.1:CDS |
TCGAGTTTGTCATGAATACT+GGG | 0.589756 | 1:-61514297 | MsaT003757.1:CDS |
GTCAGATTCAAATAGAAGGA+AGG | 0.590620 | 1:-61516865 | MsaT003757.1:CDS |
AATTCGCTACTCGTGTTCAG+AGG | 0.591578 | 1:-61521594 | MsaT003757.1:CDS |
TTCTTCACCAGAAATAGTGA+AGG | 0.593991 | 1:-61515242 | MsaT003757.1:intron |
TTTGCATGAGGTCATTGATG+GGG | 0.595739 | 1:-61522821 | None:intergenic |
ATATAGTAACATGTACTGCA+TGG | 0.596328 | 1:+61516120 | None:intergenic |
TTCCTTGGAAAATAATCCAA+GGG | 0.597322 | 1:-61515416 | MsaT003757.1:CDS |
ATGAATACTGGGACTTCCGT+CGG | 0.597512 | 1:-61514286 | MsaT003757.1:CDS |
GCTTGTGAAAGCTGCCCTTG+AGG | 0.598677 | 1:+61514263 | None:intergenic |
TATCTTCTATATCACTACAC+AGG | 0.598796 | 1:+61516802 | None:intergenic |
CTTGGAAAATAATCCAAGGG+AGG | 0.599181 | 1:-61515413 | MsaT003757.1:CDS |
TATCTGGTGTTGTAGTGCCA+TGG | 0.599195 | 1:-61520949 | MsaT003757.1:CDS |
CCAATTGAGTGATAGTGCAA+AGG | 0.601500 | 1:-61522607 | MsaT003757.1:CDS |
CTGCCAGCAGGATGTAAAGG+AGG | 0.603312 | 1:+61515292 | None:intergenic |
TACAACACCAGATATATCAC+TGG | 0.607854 | 1:+61520958 | None:intergenic |
AAGAGCGAGACCTCTTCAGT+GGG | 0.608555 | 1:+61521860 | None:intergenic |
GGCACGTGTTGAGATGGAGC+GGG | 0.608670 | 1:-61517600 | MsaT003757.1:CDS |
TTGTGGCTTCAACTGTGCTG+AGG | 0.610989 | 1:-61519476 | MsaT003757.1:CDS |
TCATGATAAGCTATTGCTTG+GGG | 0.611636 | 1:-61519365 | MsaT003757.1:CDS |
AGAAGCATCTGTCACAGGGA+TGG | 0.613181 | 1:+61516770 | None:intergenic |
CCTGGAAGAATGAGACGAGT+CGG | 0.613416 | 1:+61517214 | None:intergenic |
GCCTTCTGTGGAGAACATTG+AGG | 0.614923 | 1:-61521287 | MsaT003757.1:CDS |
CAGCAAAGTAATCTCCCACT+GGG | 0.615095 | 1:+61519321 | None:intergenic |
AGATGCACTTGTCGTCGTCG+AGG | 0.617027 | 1:+61522662 | None:intergenic |
AACCATGGAAAGTGCGATAG+CGG | 0.617465 | 1:-61522552 | MsaT003757.1:CDS |
TCACAGAAGCATCTGTCACA+GGG | 0.618605 | 1:+61516766 | None:intergenic |
GATGTATATGACTCAAAACC+CGG | 0.620565 | 1:+61522744 | None:intergenic |
CGATTAGCCATCTCACACGT+AGG | 0.621187 | 1:+61517083 | None:intergenic |
AAAGATGTTTGTGGAAAAGA+CGG | 0.621650 | 1:-61519268 | MsaT003757.1:CDS |
AATACGAGGACCTTTCTGAC+GGG | 0.621688 | 1:+61516374 | None:intergenic |
TATGAAAAGAAAGATCTACT+GGG | 0.623133 | 1:+61516628 | None:intergenic |
TGGTACCTTAGAGCCTTCTG+TGG | 0.624238 | 1:-61521299 | MsaT003757.1:CDS |
AACTTCAGAATCGTAACTCA+GGG | 0.624826 | 1:-61521564 | MsaT003757.1:CDS |
CACTATTAAGGCTAAGAACG+AGG | 0.625779 | 1:-61516490 | MsaT003757.1:CDS |
TAGAGCTGTACCGGGAGCAG+GGG | 0.626804 | 1:-61519405 | MsaT003757.1:CDS |
CTTGATTGAATTCACAAACA+GGG | 0.626972 | 1:+61517006 | None:intergenic |
ACTGGAACAGAACCTAATGC+AGG | 0.626995 | 1:-61521466 | MsaT003757.1:CDS |
ATGGAGCTGATCTGGAAACT+GGG | 0.628046 | 1:-61521105 | MsaT003757.1:CDS |
ACTCAGGGACAAAGAAGTCA+AGG | 0.628732 | 1:-61521549 | MsaT003757.1:CDS |
AACCCAGAGTGGTAGGCTCG+AGG | 0.628756 | 1:+61519502 | None:intergenic |
CAAGAGCGAGACCTCTTCAG+TGG | 0.630677 | 1:+61521859 | None:intergenic |
GAAAGGTCCTCGTATTGCAA+AGG | 0.632795 | 1:-61516367 | MsaT003757.1:CDS |
CAGACCAGTGTAAATGGTGG+AGG | 0.632859 | 1:-61514236 | MsaT003757.1:CDS |
AGCACAACTCCAAATTCCAA+AGG | 0.636931 | 1:+61516315 | None:intergenic |
TCATCTCCGTGTTGAGCTAG+CGG | 0.637957 | 1:+61516957 | None:intergenic |
CGGACAACCTTTGCAATACG+AGG | 0.638052 | 1:+61516360 | None:intergenic |
AAAGTGCGATAGCGGTTCAG+AGG | 0.639762 | 1:-61522544 | MsaT003757.1:CDS |
CACATTCCTATATACAACCA+TGG | 0.639807 | 1:+61520932 | None:intergenic |
TTTAGGAAGACAAGGTCTCG+AGG | 0.642351 | 1:+61522366 | None:intergenic |
CAAGCAAGCATATCTATCTG+TGG | 0.642693 | 1:+61517448 | None:intergenic |
GGCCAGACCAGTGTAAATGG+TGG | 0.649543 | 1:-61514239 | MsaT003757.1:CDS |
AGGAAGACGCTGATTGTGAG+CGG | 0.649584 | 1:-61522524 | MsaT003757.1:CDS |
ATGTTAGAATAAAGTCCCCA+GGG | 0.650078 | 1:+61519527 | None:intergenic |
GGGTGAGAAGGATGCTATTG+CGG | 0.650154 | 1:-61516742 | MsaT003757.1:CDS |
AGTACTGCAACAGCTCCGGT+GGG | 0.653516 | 1:+61514176 | None:intergenic |
AGGACTCCTTTAGGAAGACA+AGG | 0.655074 | 1:+61522358 | None:intergenic |
TATTGCTATAGAGCTGTACC+GGG | 0.656325 | 1:-61519413 | MsaT003757.1:CDS |
AAGAAGTTAGGGCCAGCCCA+AGG | 0.657435 | 1:+61517288 | None:intergenic |
AGGCACGTGTTGAGATGGAG+CGG | 0.659804 | 1:-61517601 | MsaT003757.1:CDS |
AAATAATCGATCACCTAGGG+TGG | 0.660486 | 1:+61514023 | None:intergenic |
AGATATTTATGTATCGAACA+CGG | 0.665293 | 1:+61516148 | None:intergenic |
GTCGTCGTCGAGGAACTCGT+CGG | 0.668539 | 1:+61522672 | None:intergenic |
AGATTCAAATAGAAGGAAGG+TGG | 0.669361 | 1:-61516862 | MsaT003757.1:CDS |
CTTCCTAAAGGAGTCCTCAG+AGG | 0.671328 | 1:-61522352 | MsaT003757.1:CDS |
GGCAATCTGGACATCCTCTG+AGG | 0.675158 | 1:+61522338 | None:intergenic |
GAGCAATGTGAATAATGAGG+CGG | 0.679381 | 1:-61517192 | MsaT003757.1:CDS |
AGCAGTACATAAAATCTGGG+TGG | 0.681653 | 1:-61521030 | MsaT003757.1:CDS |
TGGAGGTGGAAGTGATCAAG+GGG | 0.683131 | 1:-61514219 | MsaT003757.1:CDS |
ATGAAAAGAAAGATCTACTG+GGG | 0.686955 | 1:+61516629 | None:intergenic |
TCTCCGTGTTGAGCTAGCGG+CGG | 0.687733 | 1:+61516960 | None:intergenic |
ACATTGAGGGTGAATACTGG+CGG | 0.689031 | 1:-61521273 | MsaT003757.1:CDS |
TCACCGCCGCTAGCTCAACA+CGG | 0.689367 | 1:-61516963 | MsaT003757.1:CDS |
AGAACGAGGATAATCATGAG+AGG | 0.690743 | 1:-61516476 | MsaT003757.1:CDS |
GTTAACGGAAACATCTCTTG+TGG | 0.691193 | 1:-61516408 | MsaT003757.1:CDS |
TGAGGGTGAATACTGGCGGA+TGG | 0.693563 | 1:-61521269 | MsaT003757.1:CDS |
AGCCACAATTGAACCCAGAG+TGG | 0.697023 | 1:+61519491 | None:intergenic |
TCTACAAGAGCAGATGCCAG+CGG | 0.709323 | 1:-61516564 | MsaT003757.1:CDS |
TCTTACTGACAATAAGCCAG+CGG | 0.719232 | 1:-61514099 | MsaT003757.1:CDS |
GTATATGACTCAAAACCCGG+TGG | 0.733791 | 1:+61522747 | None:intergenic |
TCTATAGCAATATGTCCATG+TGG | 0.743255 | 1:+61519424 | None:intergenic |
TTACTGGTGCAGAATCAGCG+AGG | 0.757137 | 1:-61516599 | MsaT003757.1:CDS |
TAGGTGTGTCCAAAACCCTG+GGG | 0.771641 | 1:-61519542 | MsaT003757.1:CDS |
AGAGCGAGACCTCTTCAGTG+GGG | 0.777129 | 1:+61521861 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 61514037 | 61522838 | 61514037 | ID=MsaG003757 |
Chr1 | mRNA | 61514037 | 61522838 | 61514037 | ID=MsaT003757.1;Parent=MsaG003757 |
Chr1 | exon | 61514037 | 61514342 | 61514037 | ID=MsaT003757.1.exon11;Parent=MsaT003757.1 |
Chr1 | CDS | 61514037 | 61514342 | 61514037 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61515243 | 61515440 | 61515243 | ID=MsaT003757.1.exon10;Parent=MsaT003757.1 |
Chr1 | CDS | 61515243 | 61515440 | 61515243 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61516077 | 61516180 | 61516077 | ID=MsaT003757.1.exon9;Parent=MsaT003757.1 |
Chr1 | CDS | 61516077 | 61516180 | 61516077 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61516271 | 61517621 | 61516271 | ID=MsaT003757.1.exon8;Parent=MsaT003757.1 |
Chr1 | CDS | 61516271 | 61517621 | 61516271 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61519246 | 61519614 | 61519246 | ID=MsaT003757.1.exon7;Parent=MsaT003757.1 |
Chr1 | CDS | 61519246 | 61519614 | 61519246 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61519944 | 61520105 | 61519944 | ID=MsaT003757.1.exon6;Parent=MsaT003757.1 |
Chr1 | CDS | 61519944 | 61520105 | 61519944 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61520913 | 61521134 | 61520913 | ID=MsaT003757.1.exon5;Parent=MsaT003757.1 |
Chr1 | CDS | 61520913 | 61521134 | 61520913 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61521243 | 61521752 | 61521243 | ID=MsaT003757.1.exon4;Parent=MsaT003757.1 |
Chr1 | CDS | 61521243 | 61521752 | 61521243 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61521871 | 61521948 | 61521871 | ID=MsaT003757.1.exon3;Parent=MsaT003757.1 |
Chr1 | CDS | 61521871 | 61521948 | 61521871 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61522324 | 61522395 | 61522324 | ID=MsaT003757.1.exon2;Parent=MsaT003757.1 |
Chr1 | CDS | 61522324 | 61522395 | 61522324 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Chr1 | exon | 61522515 | 61522838 | 61522515 | ID=MsaT003757.1.exon1;Parent=MsaT003757.1 |
Chr1 | CDS | 61522515 | 61522838 | 61522515 | ID=cds.MsaT003757.1;Parent=MsaT003757.1 |
Gene Sequence |
Protein sequence |