AlfalfaGEDB | MsaG003792

M. sativa ssp. caerulea / MsaG003792

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003792	XP_039684943.1	95.813	1027	43	0	1	1027	73	1099	0.0	1939

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003792	sp\|Q9LVP0\|Y5639_ARATH	61.230	1024	371	11	2	1012	75	1085	0.0	1162
MsaG003792	sp\|Q9LVP0\|Y5639_ARATH	36.257	342	217	1	277	618	62	402	9.61e-46	182
MsaG003792	sp\|Q9LVP0\|Y5639_ARATH	30.769	247	146	2	396	618	37	282	1.58e-20	101
MsaG003792	sp\|Q9LVP0\|Y5639_ARATH	40.876	137	80	1	1	136	554	690	1.02e-13	79.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003792	tr\|A0A396JQN0\|A0A396JQN0_MEDTR	95.813	1027	43	0	1	1027	73	1099	0.0	1939

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000030	MsaG003792	0.802548	8.947561e-49	1.281758e-46
MsaG000045	MsaG003792	0.860754	3.263114e-63	2.611356e-60
MsaG000062	MsaG003792	0.819590	1.876006e-52	4.081271e-50
MsaG000070	MsaG003792	0.846722	3.422884e-59	1.660632e-56
MsaG000083	MsaG003792	0.914772	3.212011e-84	4.171854e-80
MsaG000110	MsaG003792	0.831759	2.512111e-55	7.649197e-53
MsaG000113	MsaG003792	0.909307	1.584693e-81	1.432394e-77
MsaG000127	MsaG003792	0.855028	1.604718e-61	1.037705e-58
MsaG000128	MsaG003792	0.860225	4.710209e-63	3.694176e-60
MsaG000140	MsaG003792	0.881132	6.559589e-70	1.247884e-66

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003792	MtrunA17_Chr1g0189871	95.813	1027	43	0	1	1027	73	1099	0.0	1939
MsaG003792	MtrunA17_Chr1g0169841	59.277	1024	393	10	1	1011	81	1093	0.0	1132
MsaG003792	MtrunA17_Chr2g0312651	51.827	1040	480	11	1	1028	75	1105	0.0	940
MsaG003792	MtrunA17_Chr2g0296601	37.727	1100	590	14	4	1028	169	1248	0.0	649
MsaG003792	MtrunA17_Chr2g0296601	37.405	655	361	4	12	618	81	734	1.41e-100	343
MsaG003792	MtrunA17_Chr2g0296601	33.660	612	329	5	120	660	69	674	4.25e-74	267
MsaG003792	MtrunA17_Chr2g0296601	35.282	496	295	3	2	496	360	830	1.78e-69	253
MsaG003792	MtrunA17_Chr2g0296601	39.073	151	91	1	1	150	694	844	3.86e-16	84.0
MsaG003792	MtrunA17_Chr4g0052921	38.944	1004	564	14	35	1004	260	1248	0.0	644
MsaG003792	MtrunA17_Chr4g0052921	38.502	574	348	3	49	619	80	651	3.48e-87	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003792	AT5G63930.1	61.230	1024	371	11	2	1012	75	1085	0.0	1162
MsaG003792	AT5G63930.1	36.257	342	217	1	277	618	62	402	9.76e-47	182
MsaG003792	AT5G63930.1	30.769	247	146	2	396	618	37	282	1.60e-21	101
MsaG003792	AT5G63930.1	40.876	137	80	1	1	136	554	690	1.03e-14	79.7
MsaG003792	AT5G63930.2	61.230	1024	371	11	2	1012	11	1021	0.0	1162
MsaG003792	AT5G63930.2	36.418	335	212	1	284	618	5	338	1.03e-45	179
MsaG003792	AT5G63930.2	40.876	137	80	1	1	136	490	626	1.27e-14	79.3
MsaG003792	AT2G33170.2	59.034	1035	398	10	1	1017	86	1112	0.0	1147
MsaG003792	AT2G33170.1	59.034	1035	398	10	1	1017	86	1112	0.0	1147
MsaG003792	AT1G17230.1	52.611	1015	464	6	2	1007	69	1075	0.0	976

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Find 211 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGAAATTGGAAAAGG+TGG	0.581520	1:-62082845	MsaT003792.1:CDS
AAATCAATGTCTGCTGTTGT+TGG	0.370374	1:-62082365	MsaT003792.1:CDS
AAATCTTTCAACAGTTGATT+TGG	0.280719	1:-62083800	MsaT003792.1:CDS
AAATGTGATGTCTACAGTTA+TGG	0.440975	1:-62081820	MsaT003792.1:CDS
AAATTCCTGCAGAAATAGGC+CGG	0.580801	1:-62084836	MsaT003792.1:CDS
AACAGCAGCATTGATCTAAA+TGG	0.354390	1:-62082734	MsaT003792.1:CDS
AAGAGAGGCAGAGAAGGTAA+AGG	0.560364	1:+62083178	None:intergenic
AAGTATGTGTTTGAAATATT+TGG	0.184031	1:+62082929	None:intergenic
AAGTCAAGAGACTCCACCAT+TGG	0.538755	1:+62085026	None:intergenic
AAGTTGATGATCTTGAACTT+AGG	0.449619	1:-62083943	MsaT003792.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	62081489	62085045	62081489	ID=MsaG003792
Chr1	mRNA	62081489	62085045	62081489	ID=MsaT003792.1;Parent=MsaG003792
Chr1	exon	62081489	62081871	62081489	ID=MsaT003792.1.exon2;Parent=MsaT003792.1
Chr1	CDS	62081489	62081871	62081489	ID=cds.MsaT003792.1;Parent=MsaT003792.1
Chr1	exon	62082342	62085045	62082342	ID=MsaT003792.1.exon1;Parent=MsaT003792.1
Chr1	CDS	62082342	62085045	62082342	ID=cds.MsaT003792.1;Parent=MsaT003792.1

Gene Sequence

>MsaT003792.1

ATGGTGGAGTCTCTTGACTTGAATGCAATGAATCTCTCAGGCTCTTTGTCTTCCAGCATCGGTGGTTTGGTTCACTTACTTCACCTTAATCTGTCTCAAAACACTTTCTCTGGTTTTATACCAAAGGAAATTGGAAACTGTTCAAGTTTGCAAGTTCTTGGCCTCAACATCAATGAATTTAAAGGTCAAATTCCTGCAGAAATAGGCCGGCTTTCAAATTTAACCGAATTGCATCTTTCCAACAACCAGCTCTCTGGACCTTTACCGGATGCAATTGGTAACCTTTCTTCACTCTCAATACTTACTCTTTACACCAATCATCTCAGTGGACCTTTGCCACCTTCTATCGGGAACCTTAAAAGATTGATCCGGTTTAGAGCCGGACAGAATATGATCTCAGGAAGTCTATCTCAAGAGATAGGTGGATGTGAAAGCTTGCAGTATCTTGGTTTAACTCAAAATCAGATAAGTGGTGAAATACCAAAAGAACTTGGGTTACTCAAGAACTTGCAATGTTTGGTCCTTAGGGAAAATAATCTCCATGGTGGTATACCTAAAGAGCTTGGAAACTGTACAAATTTGGAGGTTCTTGCTCTTTATCAGAACAATCTTGTGGAATCAATTCCAAAGGAGCTTGGAAACCTTGAAGTCCTAAAGAAACTATACCTTTACAGGAATGAGTTGACAGGAAATATTCCAAGGGAGATTGGAAACCTTTCTGTTGCAATTGAGATTGATTTTTCAGAGAATCTTCTTACAGGAGAGATACCGATCGAGTTGGTTAATATAAAAGGCTTGCGGTTGCTTCATCTCTTTCAGAACAAGTTAACCGGCATGATTCCAAATGAGTTCACCACATTGAAAAACTTGACTGAGCTTGATCTCTCTATCAATTATCTCAATGGCACTATTCCTAATGGATTTCAAGATTTAACTAACCTTACCTCTTTGCAACTCTTCAACAACTCATTAAGTGGTAGAATTCCTTATGCACTTGGAGCAAATAGTCCTCTTTGGGTGCTTGATTTGTCATTCAACTTTTTGGTTGGAAGAATTCCAGTTCATCTTTGCCAACTATCCAAGTTGATGATCTTGAACTTAGGATCAAACAAACTCGCCGGAAATATACCTTATGGAATTACAAGCTGCAAGTCTTTGCTTTATCTTCGCCTCTTCAGTAACAACTTGAGGGGCAAGTTTCCTTCTAATTTATGCAAGCTTGTAAATCTTTCAACAGTTGATTTGGATCAGAATGACTTCACAGGCCCTATTCCTCCACAAATTGGTAACTTCAAAAATTTGCAAAGACTTCACCTTTCTAACAACCACTTTTCGTCTGAACTGCCAAAAGAAATCGGTAACCTTTCTCAGTTGGTGTCCTTTAATGTCTCATCAAATTGTCTTTTTGGTAGAGTGCCTATGGAACTTTTCAAATGCAGGAAGTTACAAAGACTTGACCTCAGCGGAAACAGCTTCGCAGGTACGTTATCAGGTGAGATAGGAACTCTTTCACAGTTAGAGCTTCTCAGGCTCTCACGTAACAACTTTTCTGGTAATATTCCATTGGAAGTCGGAAAACTCTTCCGGTTGACCGAACTACAAATGAGCGAAAACTCATTTTGTGGTTACATTCCACAAGAGTTAGGTTCCCTCTCATCCTTGCAAATTGCACTTAATCTCAGCTATAATAAACTTTCAGGCCAAATACCCTCTAAGCTTGGGAATCTTATTATGCTAGAATCCCTTCAACTCAATAACAACCATTTGAGTGGCGAAATTCCAGACTCTTTTAACAGTCTTTCAAGTTTACTTTCTTTCAACTTCTCATACAATGGTCTTATAGGCCCTTTACCTTCTCTGCCTCTCTTTCAAAACTCAACATTCAGCTGCTTTTTGGGTAACAAAGGTCTCTGTGGAGGACACCTTGTCCCTTGTACAAATTCACCTTCACATTCCTCTCCAAATAAACTAGGGAAAATTCTAGCTATAGTTGCAGCTATTGTTAGTGTTGTTTCATTGATTTTAATTCTAGTTGTTATATATCTCATGAGAAATCTCATTGTGCCACAACAAGTTATAGATAAACCAAATGCTCCAAATATTTCAAACACATACTTTTTCCCAAAAGAGGAGTTGAATTTCCAAGACATGGTTGAAGCTACTGAAAATTTCCATTCCAAATATGAAATTGGAAAAGGTGGTAGTGGAACTGTATATAGAGCAGATATATCAACTGATCATGCAAATATAAATTCAATCGCTATAAAGAAGCTAACATCAAACAGTCACAACAGCAGCATTGATCTAAATGGCTGTTTCCGCGCCGAAATCTCAACTTTAGGAAAAATAAGGCATAGAAACATTGTGAAGTTATATGGTTTCTGCAACCATAGTGGCTCAAGTATGCTATTCTATGAGTACATGGAAAAGGGTAGTTTGGGAGAGTTACTTCATGGAGAATCTTCCTCTAGTCTAGACTGGTATTCAAGGTTTAGGATTGCACTTGGAACTGCACAAGGACTCTCTTATTTGCACCATGATTGCAAGCCTAGGATTATCCACCGTGATATCAAGTCCAATAACATACTTATTGACCATGAATTTGAAGCTCATGTTGGTGATTTTGGCTTGGCTAAGCTAGTTGATATCTCAAGGTCTAAATCAATGTCTGCTGTTGTTGGTTCTTATGGCTACATTGCCCCTGAGTATGCATACACAATGAAAATCACAGAGAAATGTGATGTCTACAGTTATGGAGTAGTCCTTTTGGAGTTACTTACGGGCAAGAAGCCAGTCCAATCATTGGATCAAGGTGGTGGTGATCTTGTAACATGGGTAACAAATAATATTAACAAATATTCATTGACACTAGACAACATCCTTGATGCAAAATTGGACCTACTACATGAAATTGATGTTGCACAAGTATTTGATGTCTTAAAAATTGCTTTAATGTGCACCGACAACTCTCCTTCTAGACGCCCAACCATGCGTAAAGTTGTCTCAATGCTTACAAGTTCTAGTCAACGGAAAGAGCAATCTTTGTTATCTCCATGTCAAGAATCAAGTAAGATAGAAGAATATTGA

Protein sequence

>MsaT003792.1

MVESLDLNAMNLSGSLSSSIGGLVHLLHLNLSQNTFSGFIPKEIGNCSSLQVLGLNINEFKGQIPAEIGRLSNLTELHLSNNQLSGPLPDAIGNLSSLSILTLYTNHLSGPLPPSIGNLKRLIRFRAGQNMISGSLSQEIGGCESLQYLGLTQNQISGEIPKELGLLKNLQCLVLRENNLHGGIPKELGNCTNLEVLALYQNNLVESIPKELGNLEVLKKLYLYRNELTGNIPREIGNLSVAIEIDFSENLLTGEIPIELVNIKGLRLLHLFQNKLTGMIPNEFTTLKNLTELDLSINYLNGTIPNGFQDLTNLTSLQLFNNSLSGRIPYALGANSPLWVLDLSFNFLVGRIPVHLCQLSKLMILNLGSNKLAGNIPYGITSCKSLLYLRLFSNNLRGKFPSNLCKLVNLSTVDLDQNDFTGPIPPQIGNFKNLQRLHLSNNHFSSELPKEIGNLSQLVSFNVSSNCLFGRVPMELFKCRKLQRLDLSGNSFAGTLSGEIGTLSQLELLRLSRNNFSGNIPLEVGKLFRLTELQMSENSFCGYIPQELGSLSSLQIALNLSYNKLSGQIPSKLGNLIMLESLQLNNNHLSGEIPDSFNSLSSLLSFNFSYNGLIGPLPSLPLFQNSTFSCFLGNKGLCGGHLVPCTNSPSHSSPNKLGKILAIVAAIVSVVSLILILVVIYLMRNLIVPQQVIDKPNAPNISNTYFFPKEELNFQDMVEATENFHSKYEIGKGGSGTVYRADISTDHANINSIAIKKLTSNSHNSSIDLNGCFRAEISTLGKIRHRNIVKLYGFCNHSGSSMLFYEYMEKGSLGELLHGESSSSLDWYSRFRIALGTAQGLSYLHHDCKPRIIHRDIKSNNILIDHEFEAHVGDFGLAKLVDISRSKSMSAVVGSYGYIAPEYAYTMKITEKCDVYSYGVVLLELLTGKKPVQSLDQGGGDLVTWVTNNINKYSLTLDNILDAKLDLLHEIDVAQVFDVLKIALMCTDNSPSRRPTMRKVVSMLTSSSQRKEQSLLSPCQESSKIEEY*