AlfalfaGEDB | MsaG003830

M. sativa ssp. caerulea / MsaG003830

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003830	XP_003590977.1	97.938	388	8	0	1	388	1	388	0.0	776

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003830	sp\|Q8GUN5\|PHL1_ARATH	56.972	251	99	5	61	306	119	365	2.16e-82	260

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003830	tr\|G7I6T3\|G7I6T3_MEDTR	97.938	388	8	0	1	388	1	388	0.0	776

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TFs/TRs:

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Gene ID	Type	Classification
MsaG003830	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003830	MtrunA17_Chr1g0190301	97.938	388	8	0	1	388	1	388	0.0	776
MsaG003830	MtrunA17_Chr7g0274471	54.415	419	134	11	8	385	37	439	8.52e-129	377
MsaG003830	MtrunA17_Chr7g0261911	44.656	421	177	11	21	388	72	489	7.48e-95	292
MsaG003830	MtrunA17_Chr7g0258551	58.955	134	54	1	174	307	211	343	3.57e-51	176
MsaG003830	MtrunA17_Chr1g0175091	55.488	164	59	5	166	329	253	402	3.94e-50	174
MsaG003830	MtrunA17_Chr2g0291021	55.921	152	63	2	175	322	49	200	5.29e-47	163
MsaG003830	MtrunA17_Chr7g0254981	52.903	155	70	2	174	325	49	203	1.14e-44	155
MsaG003830	MtrunA17_Chr6g0461641	45.026	191	64	5	171	327	38	221	1.36e-40	148
MsaG003830	MtrunA17_Chr2g0321461	43.558	163	72	2	161	303	31	193	1.32e-36	137
MsaG003830	MtrunA17_Chr5g0409731	42.857	182	81	5	168	326	18	199	1.92e-34	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003830	AT5G29000.1	56.972	251	99	5	61	306	76	322	8.49e-84	260
MsaG003830	AT5G29000.3	56.972	251	99	5	61	306	76	322	8.49e-84	260
MsaG003830	AT5G29000.2	56.972	251	99	5	61	306	119	365	2.20e-83	260
MsaG003830	AT4G28610.1	49.020	306	131	9	17	304	57	355	3.34e-77	244
MsaG003830	AT3G04450.4	50.365	274	120	7	43	309	71	335	2.23e-76	242
MsaG003830	AT3G04450.2	50.365	274	120	7	43	309	71	335	2.23e-76	242
MsaG003830	AT3G04450.1	50.545	275	118	7	43	309	111	375	4.84e-76	242
MsaG003830	AT2G20400.1	49.333	225	95	4	93	304	142	360	1.73e-56	190
MsaG003830	AT2G20400.2	49.115	226	95	5	93	304	142	361	1.04e-54	186
MsaG003830	AT2G01060.1	58.125	160	58	3	161	315	5	160	2.21e-51	174

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Find 93 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACGGATTTCAAGGAG+TGG	0.628215	1:-62583782	MsaT003830.1:CDS
AACAACGGATTTCAAGGAGT+GGG	0.590584	1:-62583781	MsaT003830.1:CDS
AAGAAAGTGACGTTATGTCC+TGG	0.515386	1:-62583908	MsaT003830.1:CDS
AATACAAGCACAGAGCAAAA+GGG	0.565422	1:-62581541	MsaT003830.1:CDS
AATCTAAGCCTAGAATGCGT+TGG	0.584166	1:-62583111	MsaT003830.1:CDS
AATGACCATGTGGAATACAA+TGG	0.649000	1:-62583831	MsaT003830.1:CDS
AATGCTTCTGTAATCCCCTT+AGG	0.564243	1:+62581959	None:intergenic
AATGGTTCTGAAGTCTTGGG+TGG	0.595066	1:-62583813	MsaT003830.1:CDS
AATTCCAACATCAGAAGTGT+TGG	0.526621	1:-62584014	MsaT003830.1:CDS
AATTGAAGAATATCTTCAAA+TGG	0.505497	1:+62583876	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	62581453	62584081	62581453	ID=MsaG003830
Chr1	mRNA	62581453	62584081	62581453	ID=MsaT003830.1;Parent=MsaG003830
Chr1	exon	62581453	62581776	62581453	ID=MsaT003830.1.exon7;Parent=MsaT003830.1
Chr1	CDS	62581453	62581776	62581453	ID=cds.MsaT003830.1;Parent=MsaT003830.1
Chr1	exon	62581913	62581982	62581913	ID=MsaT003830.1.exon6;Parent=MsaT003830.1
Chr1	CDS	62581913	62581982	62581913	ID=cds.MsaT003830.1;Parent=MsaT003830.1
Chr1	exon	62582277	62582334	62582277	ID=MsaT003830.1.exon5;Parent=MsaT003830.1
Chr1	CDS	62582277	62582334	62582277	ID=cds.MsaT003830.1;Parent=MsaT003830.1
Chr1	exon	62582764	62582803	62582764	ID=MsaT003830.1.exon4;Parent=MsaT003830.1
Chr1	CDS	62582764	62582803	62582764	ID=cds.MsaT003830.1;Parent=MsaT003830.1
Chr1	exon	62582893	62582969	62582893	ID=MsaT003830.1.exon3;Parent=MsaT003830.1
Chr1	CDS	62582893	62582969	62582893	ID=cds.MsaT003830.1;Parent=MsaT003830.1
Chr1	exon	62583053	62583257	62583053	ID=MsaT003830.1.exon2;Parent=MsaT003830.1
Chr1	CDS	62583053	62583257	62583053	ID=cds.MsaT003830.1;Parent=MsaT003830.1
Chr1	exon	62583689	62584081	62583689	ID=MsaT003830.1.exon1;Parent=MsaT003830.1
Chr1	CDS	62583689	62584081	62583689	ID=cds.MsaT003830.1;Parent=MsaT003830.1

Gene Sequence

>MsaT003830.1

ATGTCTTCGTCTATTCCCTCTTCCTCGATGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCCCTTCTGAACAGCCTGATAACGTCCATTTTTCCTCTGCTTCAGAAATACATTCTATGACATTCCCTCAAGAAAGTGACGTTATGTCCTGGGGAACTGATCCATTTGAAGATATTCTTCAATTTCCTGATAATGTTCCCACCCAGAATGACCATGTGGAATACAATGGTTCTGAAGTCTTGGGTGGAAATGCCAAAACAACGGATTTCAAGGAGTGGGTTGATCAGTTGATGTCAGTCGATGATGATTCTATTCAGCCAAATTGGAATGAACTTCTCGGTGATAACAATATGACAGAACCAAAATCACAGGATGCACAAATGTCCCCTTCTCTCTTGATGCAAGAGACCCAGGTTTCACAGCAGCAGTATATACTATCACTACCATCCAAAGAAGTTAATGATCTTCCTAATTCTTCTGTGTCGACTACATCGCAATCTAAGCCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCTAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAGAAATATAGAACTGCCAGGTACAAACCAGAATCATCAGAAGGAATTCCAGAGAAGAAGTTGACTTCAATCGACGAAATGCCGTCTATAGACTTAAAAACGCCTAAGGGGATTACAGAAGCATTGCGGCTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAAATTTACAGATTCAGATTGAGAACCAAGGGAAGCATCTACAGATGATGTTTGAGCAACAGATGAAGTCGGATGAGCCTTCTGCTCCACTATCAAGTGTGGCACTATCTTCTCCAGTTGAAAATTTAGAAAACACAAATGAAGGTCACGAAAAAATTGGAATCAATGGCAGCACTTCAGACAACATGCCAGAAGGAAGTTCCCAGAATACAAGCACAGAGCAAAAGGGAGATGATGCTAAAGCTACCGGTGAACTTGAGCTGGGAGAAGACCAACTTACCGCACCACCCACAAAACGAGTGAAGACTGACAAGTAG

Protein sequence

>MsaT003830.1

MSSSIPSSSMQAASINSNIRSVGHMFSTPSEQPDNVHFSSASEIHSMTFPQESDVMSWGTDPFEDILQFPDNVPTQNDHVEYNGSEVLGGNAKTTDFKEWVDQLMSVDDDSIQPNWNELLGDNNMTEPKSQDAQMSPSLLMQETQVSQQQYILSLPSKEVNDLPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEGIPEKKLTSIDEMPSIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKHLQMMFEQQMKSDEPSAPLSSVALSSPVENLENTNEGHEKIGINGSTSDNMPEGSSQNTSTEQKGDDAKATGELELGEDQLTAPPTKRVKTDK*