AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003831


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003831 MtrunA17_Chr1g0190311 87.307 646 41 3 3 607 2 647 0.0 1144
MsaG003831 MtrunA17_Chr8g0392541 83.446 296 15 3 212 492 29 305 2.00e-168 482
MsaG003831 MtrunA17_Chr1g0183321 58.006 331 122 5 289 604 418 746 1.20e-133 409
MsaG003831 MtrunA17_Chr7g0262001 55.215 326 133 2 291 604 378 702 3.52e-123 380
MsaG003831 MtrunA17_Chr3g0080761 29.012 324 171 10 299 600 374 660 1.50e-33 136
MsaG003831 MtrunA17_Chr8g0354821 29.688 320 171 9 299 600 401 684 7.60e-33 134
MsaG003831 MtrunA17_Chr7g0255181 29.487 312 166 10 299 600 434 701 1.65e-32 133
MsaG003831 MtrunA17_Chr5g0399801 29.755 326 154 12 299 599 809 1084 7.29e-29 122
MsaG003831 MtrunA17_Chr5g0403241 38.710 186 106 6 418 602 1327 1505 2.26e-28 121
MsaG003831 MtrunA17_Chr4g0003501 29.338 317 165 10 299 599 677 950 4.16e-28 120
MsaG003831 MtrunA17_Chr8g0373821 38.798 183 101 6 418 599 361 533 6.80e-27 115
MsaG003831 MtrunA17_Chr4g0075321 37.766 188 105 6 418 602 884 1062 5.40e-26 114
MsaG003831 MtrunA17_Chr4g0003511 27.900 319 169 10 299 599 772 1047 6.29e-26 113
MsaG003831 MtrunA17_Chr6g0476121 29.483 329 167 12 300 602 352 641 6.95e-26 112
MsaG003831 MtrunA17_Chr6g0476111 29.787 329 166 12 300 602 403 692 7.88e-26 112
MsaG003831 MtrunA17_Chr7g0252211 27.744 328 174 11 300 602 466 755 4.27e-23 104
MsaG003831 MtrunA17_Chr1g0170651 29.642 307 152 12 299 599 293 541 8.34e-22 99.8
MsaG003831 MtrunA17_Chr8g0368901 26.299 308 160 11 291 578 497 757 9.13e-20 94.0
MsaG003831 MtrunA17_Chr3g0094881 26.102 295 163 10 301 579 369 624 1.40e-19 92.8
MsaG003831 MtrunA17_Chr1g0163041 26.962 293 157 11 301 578 315 565 4.54e-19 91.3
MsaG003831 MtrunA17_Chr1g0163051 27.425 299 160 12 301 584 396 652 4.83e-19 91.3
MsaG003831 MtrunA17_Chr6g0460921 34.969 163 95 3 420 577 241 397 9.08e-19 89.4
MsaG003831 MtrunA17_Chr8g0368911 25.649 308 142 10 301 578 500 750 2.83e-18 89.0
MsaG003831 MtrunA17_Chr7g0232811 31.553 206 108 8 425 599 331 534 9.30e-18 87.0
MsaG003831 MtrunA17_Chr8g0369301 26.174 298 153 12 301 578 487 737 4.50e-16 82.0
MsaG003831 MtrunA17_Chr7g0232841 31.250 208 107 10 425 599 319 523 7.36e-16 80.9
MsaG003831 MtrunA17_Chr7g0232981 30.208 192 115 6 425 599 322 511 1.64e-15 79.7
MsaG003831 MtrunA17_Chr1g0201311 29.189 185 92 7 426 601 67 221 7.22e-14 74.3
MsaG003831 MtrunA17_Chr3g0125251 32.804 189 104 8 414 600 1294 1461 1.14e-13 74.7
MsaG003831 MtrunA17_Chr1g0201621 28.649 185 93 7 426 601 67 221 2.13e-13 72.8
MsaG003831 MtrunA17_Chr2g0305371 29.348 184 96 9 422 600 314 468 2.36e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003831 AT3G04380.1 64.350 331 102 3 291 606 135 464 1.88e-160 469
MsaG003831 AT3G04380.3 64.350 331 102 3 291 606 119 448 1.88e-160 468
MsaG003831 AT3G04380.2 64.350 331 102 3 291 606 108 437 2.40e-160 468
MsaG003831 AT3G04380.4 64.350 331 102 3 291 606 135 464 3.43e-160 468
MsaG003831 AT3G04380.6 64.350 331 102 3 291 606 108 437 3.82e-160 467
MsaG003831 AT3G04380.5 64.350 331 102 3 291 606 92 421 4.06e-160 466
MsaG003831 AT5G43990.7 53.172 331 135 3 288 604 293 617 5.04e-114 354
MsaG003831 AT5G43990.8 53.172 331 135 3 288 604 313 637 5.17e-114 355
MsaG003831 AT5G43990.12 53.172 331 135 3 288 604 313 637 5.17e-114 355
MsaG003831 AT5G43990.6 53.172 331 135 3 288 604 313 637 5.17e-114 355
MsaG003831 AT5G43990.13 53.172 331 135 3 288 604 313 637 5.17e-114 355
MsaG003831 AT5G43990.16 53.172 331 135 3 288 604 362 686 1.83e-113 355
MsaG003831 AT5G43990.16 40.367 109 64 1 10 118 9 116 8.36e-15 78.2
MsaG003831 AT5G43990.5 53.172 331 135 3 288 604 362 686 1.83e-113 355
MsaG003831 AT5G43990.5 40.367 109 64 1 10 118 9 116 8.36e-15 78.2
MsaG003831 AT5G43990.17 53.172 331 135 3 288 604 362 686 1.83e-113 355
MsaG003831 AT5G43990.17 40.367 109 64 1 10 118 9 116 8.36e-15 78.2
MsaG003831 AT5G43990.14 53.172 331 135 3 288 604 362 686 1.83e-113 355
MsaG003831 AT5G43990.14 40.367 109 64 1 10 118 9 116 8.36e-15 78.2
MsaG003831 AT5G43990.3 53.172 331 135 3 288 604 382 706 2.18e-113 355
MsaG003831 AT5G43990.3 40.367 109 64 1 10 118 9 116 9.09e-15 78.2
MsaG003831 AT5G43990.11 53.172 331 135 3 288 604 382 706 2.18e-113 355
MsaG003831 AT5G43990.11 40.367 109 64 1 10 118 9 116 9.09e-15 78.2
MsaG003831 AT5G43990.1 53.172 331 135 3 288 604 382 706 2.18e-113 355
MsaG003831 AT5G43990.1 40.367 109 64 1 10 118 9 116 9.09e-15 78.2
MsaG003831 AT5G43990.4 53.172 331 135 3 288 604 382 706 2.18e-113 355
MsaG003831 AT5G43990.4 40.367 109 64 1 10 118 9 116 9.09e-15 78.2
MsaG003831 AT5G43990.15 53.172 331 135 3 288 604 385 709 3.11e-113 355
MsaG003831 AT5G43990.15 40.367 109 64 1 10 118 32 139 7.93e-15 78.6
MsaG003831 AT5G43990.10 53.172 331 135 3 288 604 385 709 3.11e-113 355
MsaG003831 AT5G43990.10 40.367 109 64 1 10 118 32 139 7.93e-15 78.6
MsaG003831 AT5G43990.9 53.172 331 135 3 288 604 405 729 3.33e-113 355
MsaG003831 AT5G43990.9 40.367 109 64 1 10 118 32 139 8.60e-15 78.6
MsaG003831 AT5G43990.2 53.172 331 135 3 288 604 405 729 3.33e-113 355
MsaG003831 AT5G43990.2 40.367 109 64 1 10 118 32 139 8.60e-15 78.6
MsaG003831 AT1G04050.3 51.807 332 141 3 288 604 292 619 1.65e-111 348
MsaG003831 AT1G04050.2 51.807 332 141 3 288 604 396 723 7.65e-111 349
MsaG003831 AT1G04050.1 51.807 332 141 3 288 604 396 723 7.65e-111 349
MsaG003831 AT5G04940.2 28.571 322 169 10 299 600 386 666 3.41e-31 129
MsaG003831 AT5G04940.1 28.571 322 169 10 299 600 386 666 3.41e-31 129
MsaG003831 AT2G23740.3 39.894 188 98 7 419 600 1200 1378 2.05e-28 122
MsaG003831 AT2G23740.6 39.894 188 98 7 419 600 1200 1378 2.05e-28 122
MsaG003831 AT2G23740.2 39.894 188 98 7 419 600 1200 1378 2.05e-28 122
MsaG003831 AT2G23740.1 39.894 188 98 7 419 600 1193 1371 2.08e-28 122
MsaG003831 AT1G73100.1 29.245 318 173 10 299 600 384 665 4.93e-28 119
MsaG003831 AT2G22740.2 29.586 338 171 13 290 602 493 788 3.70e-27 117
MsaG003831 AT2G22740.1 29.586 338 171 13 290 602 493 788 3.70e-27 117
MsaG003831 AT2G35160.5 29.801 302 154 11 301 599 507 753 6.18e-27 116
MsaG003831 AT2G35160.2 29.801 302 154 11 301 599 543 789 7.30e-27 116
MsaG003831 AT2G35160.3 29.801 302 154 11 301 599 543 789 7.30e-27 116
MsaG003831 AT2G35160.1 29.801 302 154 11 301 599 543 789 7.30e-27 116
MsaG003831 AT2G35160.4 29.801 302 154 11 301 599 543 789 7.30e-27 116
MsaG003831 AT5G13960.1 31.111 270 134 10 354 602 384 622 4.78e-23 104
MsaG003831 AT5G13960.2 31.111 270 134 10 354 602 250 488 1.10e-22 102
MsaG003831 AT3G03750.2 29.836 305 181 9 301 599 68 345 5.54e-22 98.2
MsaG003831 AT1G17770.1 26.113 337 178 14 291 600 397 689 2.90e-21 99.0
MsaG003831 AT2G23740.4 45.378 119 60 4 419 535 1200 1315 1.06e-20 97.8
MsaG003831 AT2G23740.5 45.378 119 60 4 419 535 1200 1315 1.06e-20 97.8
MsaG003831 AT4G13460.1 27.891 294 155 10 301 578 386 638 2.46e-20 95.9
MsaG003831 AT4G13460.2 27.891 294 155 10 301 578 386 638 2.46e-20 95.9
MsaG003831 AT2G24740.1 33.508 191 104 8 428 600 566 751 1.11e-16 84.3
MsaG003831 AT2G33290.1 25.256 293 163 9 301 578 388 639 2.69e-16 83.2
MsaG003831 AT2G33290.3 25.256 293 163 9 301 578 388 639 2.69e-16 83.2
MsaG003831 AT2G33290.4 25.256 293 163 9 301 578 388 639 2.69e-16 83.2
MsaG003831 AT2G33290.2 25.256 293 163 9 301 578 388 639 2.69e-16 83.2
MsaG003831 AT3G03750.1 27.393 303 175 10 301 599 68 329 2.50e-14 75.1
MsaG003831 AT1G76710.2 26.404 178 102 6 426 599 72 224 5.14e-13 72.0
MsaG003831 AT1G76710.1 26.404 178 102 6 426 599 72 224 5.14e-13 72.0
MsaG003831 AT1G76710.3 26.404 178 102 6 426 599 72 224 6.16e-13 72.0
MsaG003831 AT1G76710.4 26.404 178 102 6 426 599 72 224 7.09e-13 71.6
MsaG003831 AT4G30860.1 28.415 183 99 8 422 600 307 461 7.21e-12 68.6
MsaG003831 AT1G77300.2 29.381 194 104 8 414 600 996 1163 8.35e-12 69.3
MsaG003831 AT1G77300.1 29.381 194 104 8 414 600 996 1163 1.04e-11 68.9

Find 153 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGAATGTAATTAAATTT+TGG 0.115496 1:+62592594 None:intergenic
TCACATCTTTGTTTGTAAAA+AGG 0.151094 1:+62590437 None:intergenic
CTAAGTCCTTCATAGCATTA+AGG 0.248100 1:+62594707 None:intergenic
TAAATTGTGATGCTGCATTA+AGG 0.275228 1:-62592761 MsaT003831.1:CDS
AATATCAATATTACCCTTAC+AGG 0.275906 1:+62592821 None:intergenic
TGAAATTATGTGCAGGATTA+TGG 0.276434 1:-62589073 MsaT003831.1:intron
TCATTCTTAGTCCTCTCAAT+TGG 0.283626 1:+62592331 None:intergenic
AATAGTTTACCTGCAATTTA+CGG 0.292002 1:+62592194 None:intergenic
GGGTTCGGAAGTGGGATTAA+AGG 0.294538 1:-62591537 MsaT003831.1:CDS
TGCTTGGATGCAACACATAA+TGG 0.299187 1:-62591500 MsaT003831.1:CDS
TGTAAGGGTAATATTGATAT+TGG 0.302485 1:-62592819 MsaT003831.1:CDS
TCTCCATCATGACAACTTAC+TGG 0.309078 1:+62594300 None:intergenic
AGATGTCCCTTGCATGATTC+AGG 0.322166 1:+62592301 None:intergenic
AGGTTTAAGCCGTAAATTGC+AGG 0.364369 1:-62592203 MsaT003831.1:intron
TCCCTTGCATGATTCAGGTT+TGG 0.366414 1:+62592306 None:intergenic
TCTGGTTAGGAAGTTTATAA+AGG 0.366891 1:-62592281 MsaT003831.1:CDS
CTTTGATACATTGTGTTACA+TGG 0.369163 1:+62592576 None:intergenic
CAGTCTGCATCAAGTGTTAC+AGG 0.375742 1:+62591560 None:intergenic
TATTGGTTCTTCTTCACCCT+TGG 0.376191 1:-62592802 MsaT003831.1:CDS
GATCAGAAGATTAAAGTATC+AGG 0.378923 1:-62593979 MsaT003831.1:CDS
GATTGCTGCTCCGATTGTTC+AGG 0.382082 1:-62592513 MsaT003831.1:CDS
CCTGTCATATAATTCTGAAT+TGG 0.382980 1:+62591619 None:intergenic
TAAGTCCTTCATAGCATTAA+GGG 0.383476 1:+62594708 None:intergenic
AGTTTCCTGTTTAAAAGTCT+TGG 0.385683 1:+62594176 None:intergenic
GACTTGAATTTAAATCGAAA+TGG 0.390716 1:-62592735 MsaT003831.1:CDS
ATTGGTTCTTCTTCACCCTT+GGG 0.396671 1:-62592801 MsaT003831.1:CDS
CATTCTTAGTCCTCTCAATT+GGG 0.399084 1:+62592332 None:intergenic
CAACATTGAAATGCTTCAAT+AGG 0.399389 1:+62589025 None:intergenic
CTTTGAGTCAAAGGAAGATA+AGG 0.400162 1:-62594548 MsaT003831.1:intron
TGAAACCCTCTCAAATTTCC+AGG 0.401603 1:-62594152 MsaT003831.1:CDS
ACCAAGTGAAGTTTCTGTTT+AGG 0.402308 1:+62594273 None:intergenic
AATATTACCCTTACAGGTTC+TGG 0.402438 1:+62592827 None:intergenic
GACTCAAGAAGGAAAGGGCT+GGG 0.404908 1:-62591708 MsaT003831.1:CDS
TTATTGAAGATGACAATTAT+CGG 0.405456 1:-62594615 MsaT003831.1:CDS
ACTTGCTCGGATTGCGGATG+AGG 0.407887 1:-62592535 MsaT003831.1:CDS
TGCCGTGATAAGAAACAAAA+AGG 0.409219 1:-62588986 MsaT003831.1:CDS
AACCAGTTCGCAGGCATTCA+TGG 0.414985 1:-62594112 MsaT003831.1:CDS
GTTTCCTGTTTAAAAGTCTT+GGG 0.416453 1:+62594177 None:intergenic
TCAGGTGTCTCCACTTCAAC+AGG 0.424005 1:+62590720 None:intergenic
GGAAGTTTATAAAGGAGTGC+TGG 0.425648 1:-62592273 MsaT003831.1:CDS
TGAATCATGCAAGGGACATC+TGG 0.436215 1:-62592299 MsaT003831.1:CDS
TACTAATCCAAGGGCAATCA+AGG 0.437821 1:-62594731 MsaT003831.1:CDS
CTGTAACACTTGATGCAGAC+TGG 0.438878 1:-62591559 MsaT003831.1:CDS
GCTTGGATGCAACACATAAT+GGG 0.439200 1:-62591499 MsaT003831.1:CDS
TAATAACACCAGAACCTGTA+AGG 0.441363 1:-62592835 MsaT003831.1:CDS
GAATGCCTGCGAACTGGTTG+TGG 0.444610 1:+62594116 None:intergenic
TGTGCATGCTCTCAAGAAAC+TGG 0.447117 1:-62592465 MsaT003831.1:CDS
GTGACATGCAGTGTGGAAAT+CGG 0.448940 1:-62592237 MsaT003831.1:CDS
TTGCAAGATTCATCAATCAT+AGG 0.449185 1:-62591472 MsaT003831.1:intron
TTAAGGGCCTTGATTGCCCT+TGG 0.450224 1:+62594724 None:intergenic
AAGACAGTCGCCTGAACAAT+CGG 0.460644 1:+62592503 None:intergenic
GCAACTTGTCGAAACAGATC+CGG 0.461669 1:+62593933 None:intergenic
ATTTAAATCGAAATGGATCA+AGG 0.466304 1:-62592728 MsaT003831.1:CDS
CAGGTGTTCTTGACTCAAGA+AGG 0.467731 1:-62591719 MsaT003831.1:CDS
CATTGTAAAGATCCAATTGA+TGG 0.470887 1:-62594042 MsaT003831.1:CDS
TCCTTTGTCTGTGAATATGC+AGG 0.471253 1:-62591653 MsaT003831.1:CDS
CTTTGAGTCAAAGGAAGATA+AGG 0.471512 1:-62594575 MsaT003831.1:CDS
CAAGGCCCTTAATGCTATGA+AGG 0.475493 1:-62594713 MsaT003831.1:CDS
TGCAGACTGGGGTTCGGAAG+TGG 0.479829 1:-62591546 MsaT003831.1:CDS
GGATGGCTAGGTCCATCAAT+TGG 0.481202 1:+62594030 None:intergenic
ATGTCAATATTTCACTTGCT+CGG 0.482161 1:-62592548 MsaT003831.1:CDS
ATATGTATGTCTATCATTGC+CGG 0.482653 1:+62591583 None:intergenic
TTCACAGACAAAGGATCCCT+TGG 0.485409 1:+62591661 None:intergenic
CATGCAAGGGACATCTGGTT+AGG 0.486296 1:-62592294 MsaT003831.1:CDS
TTTGACAGTAAGATTTCCAT+TGG 0.487180 1:+62592914 None:intergenic
ACAGATCCGGGATGAAACTT+AGG 0.488825 1:+62593946 None:intergenic
TGACTCAAGAAGGAAAGGGC+TGG 0.490394 1:-62591709 MsaT003831.1:CDS
TGTGGGATTCATATCTTGCC+TGG 0.492190 1:+62594134 None:intergenic
ATCCATGAATGCCTGCGAAC+TGG 0.494735 1:+62594110 None:intergenic
ATTGAAATGCTTCAATAGGA+TGG 0.499430 1:+62589029 None:intergenic
ACATGATAATAGTGGCGGTC+AGG 0.500724 1:+62590702 None:intergenic
AAATTCTCACATGATAATAG+TGG 0.504059 1:+62590694 None:intergenic
ACTTGATGCAGACTGGGGTT+CGG 0.504834 1:-62591552 MsaT003831.1:CDS
GGATGAAGAGGCATTATGCT+TGG 0.505357 1:-62591516 MsaT003831.1:CDS
AGATGCATACTTTGAGTCAA+AGG 0.508357 1:-62594584 MsaT003831.1:CDS
CAACTTGTCGAAACAGATCC+GGG 0.509028 1:+62593934 None:intergenic
ACCTGCAGATGATGCTGCCC+CGG 0.510370 1:+62594065 None:intergenic
CTTAATGCTATGAAGGACTT+AGG 0.511792 1:-62594706 MsaT003831.1:CDS
TTTGACAGATTGCATGTCCA+TGG 0.511932 1:-62592397 MsaT003831.1:intron
CCAATTCAGAATTATATGAC+AGG 0.514306 1:-62591619 MsaT003831.1:CDS
GGCTCACTAAATGCTTCCAA+TGG 0.514313 1:-62592930 MsaT003831.1:CDS
TATGTTGAAGACATAACAAA+AGG 0.515772 1:-62592669 MsaT003831.1:CDS
TGTAACACTTGATGCAGACT+GGG 0.519571 1:-62591558 MsaT003831.1:CDS
TGACATGCAGTGTGGAAATC+GGG 0.519904 1:-62592236 MsaT003831.1:CDS
TAAGGCATACTTTGAGTCAA+AGG 0.523841 1:-62594557 MsaT003831.1:CDS
AATAGACATTCCTGTTGAAG+TGG 0.525349 1:-62590730 MsaT003831.1:CDS
GCAGACTGGGGTTCGGAAGT+GGG 0.526732 1:-62591545 MsaT003831.1:CDS
GACAGGATTGTGCATAGTAC+CGG 0.531414 1:-62591602 MsaT003831.1:CDS
GATTGCCCTTGGATTAGTAG+TGG 0.531861 1:+62594735 None:intergenic
TCTGGTGTTATTATTGCATG+TGG 0.532171 1:+62592845 None:intergenic
CTTAGGAATCTCGGAGGTCG+AGG 0.532485 1:-62594689 MsaT003831.1:CDS
ATAGATAGAAAGATCTATCC+CGG 0.532951 1:-62594084 MsaT003831.1:CDS
TATTCTGATACACATCTGAC+AGG 0.533483 1:+62592889 None:intergenic
GTTCTTGACTCAAGAAGGAA+AGG 0.536862 1:-62591714 MsaT003831.1:CDS
CCCGGGGCAGCATCATCTGC+AGG 0.537644 1:-62594066 MsaT003831.1:CDS
AAGGAGTGCTGGAGGAAATG+TGG 0.543111 1:-62592262 MsaT003831.1:CDS
AGAAGATTTAACTTCTCCCA+AGG 0.546782 1:+62592785 None:intergenic
ATGCTTCAATAGGATGGGTA+TGG 0.547473 1:+62589035 None:intergenic
GCTCCAGTAAGTTGTCATGA+TGG 0.552655 1:-62594303 MsaT003831.1:CDS
GAATCCCACAACCAGTTCGC+AGG 0.552736 1:-62594121 MsaT003831.1:CDS
TATTTCACTTGCTCGGATTG+CGG 0.555234 1:-62592541 MsaT003831.1:CDS
TATGTCTTCAACATATCGAA+AGG 0.556421 1:+62592677 None:intergenic
TTGAAATGCTTCAATAGGAT+GGG 0.559393 1:+62589030 None:intergenic
TCACAGACAAAGGATCCCTT+GGG 0.563094 1:+62591662 None:intergenic
CTGGTGTTATTATTGCATGT+GGG 0.563538 1:+62592846 None:intergenic
CCTGCAGATGATGCTGCCCC+GGG 0.564331 1:+62594066 None:intergenic
CTTGGTAGATATAGACAACC+AGG 0.566110 1:-62594256 MsaT003831.1:CDS
ATCTTGCCTGGAAATTTGAG+AGG 0.568497 1:+62594146 None:intergenic
CTCTGAATAGAAGGATGGCT+AGG 0.569399 1:+62594018 None:intergenic
TATGAAGGACTTAGGAATCT+CGG 0.570150 1:-62594698 MsaT003831.1:CDS
ACTCAAGAAGGAAAGGGCTG+GGG 0.575809 1:-62591707 MsaT003831.1:CDS
TCATGACCACTACTAATCCA+AGG 0.576059 1:-62594741 MsaT003831.1:CDS
GAAGATTTAACTTCTCCCAA+GGG 0.576136 1:+62592786 None:intergenic
CTCGGAGGTCGAGGTGACAC+CGG 0.577150 1:-62594680 MsaT003831.1:CDS
CCTTTGTCTGTGAATATGCA+GGG 0.579512 1:-62591652 MsaT003831.1:CDS
AATGCCTGCGAACTGGTTGT+GGG 0.580159 1:+62594117 None:intergenic
CCCTGCATATTCACAGACAA+AGG 0.583203 1:+62591652 None:intergenic
TTCTTGACTCAAGAAGGAAA+GGG 0.585578 1:-62591713 MsaT003831.1:CDS
TAGATAGAAAGATCTATCCC+GGG 0.588092 1:-62594083 MsaT003831.1:CDS
ACCTAAACAGAAACTTCACT+TGG 0.589122 1:-62594274 MsaT003831.1:CDS
GATAAACCTAAGTTTCATCC+CGG 0.594944 1:-62593952 MsaT003831.1:CDS
AACACTAGAAGATTTGCCCA+AGG 0.602862 1:-62591678 MsaT003831.1:CDS
GTTTCTTGAGAGCATGCACA+AGG 0.604033 1:+62592468 None:intergenic
TGTAAGAGTGCCCAATTGAG+AGG 0.604395 1:-62592342 MsaT003831.1:intron
TCTTGCCTGGAAATTTGAGA+GGG 0.606453 1:+62594147 None:intergenic
GAAGCATTTCAATGTTGTTG+TGG 0.608519 1:-62589019 MsaT003831.1:CDS
TCCTGTTTAAAAGTCTTGGG+AGG 0.609380 1:+62594180 None:intergenic
GAGCATACGAGGAGTTGACC+TGG 0.613102 1:-62590414 MsaT003831.1:CDS
CTAGCCATCCTTCTATTCAG+AGG 0.613137 1:-62594017 MsaT003831.1:CDS
CAAAGATGTGAGAGCATACG+AGG 0.613209 1:-62590425 MsaT003831.1:CDS
AATAACACCAGAACCTGTAA+GGG 0.613867 1:-62592834 MsaT003831.1:CDS
GACCAAACCTGAATCATGCA+AGG 0.615446 1:-62592308 MsaT003831.1:CDS
AGTGGGATTAAAGGATGAAG+AGG 0.621432 1:-62591528 MsaT003831.1:CDS
GCATGCTCTCAAGAAACTGG+TGG 0.621903 1:-62592462 MsaT003831.1:CDS
GTGTTTGCTTACACTTCACA+AGG 0.626768 1:-62592438 MsaT003831.1:CDS
AGTTGTCAGCTGATAAAACC+TGG 0.627203 1:+62594238 None:intergenic
TTCTCACATGATAATAGTGG+CGG 0.628566 1:+62590697 None:intergenic
ACACTAGAAGATTTGCCCAA+GGG 0.632238 1:-62591677 MsaT003831.1:CDS
CATGACCACTACTAATCCAA+GGG 0.633516 1:-62594740 MsaT003831.1:CDS
AGTTTATAAAGGAGTGCTGG+AGG 0.635155 1:-62592270 MsaT003831.1:CDS
ATCAAGGCAAACTCTTTCTG+AGG 0.636247 1:-62592712 MsaT003831.1:CDS
TCTGTTTCGACAAGTTGCAA+TGG 0.640527 1:-62593928 MsaT003831.1:intron
AGCATACGAGGAGTTGACCT+GGG 0.646180 1:-62590413 MsaT003831.1:intron
ACCAAACCTGAATCATGCAA+GGG 0.670931 1:-62592307 MsaT003831.1:CDS
CTTTGTCTGTGAATATGCAG+GGG 0.680388 1:-62591651 MsaT003831.1:CDS
GTAACACTTGATGCAGACTG+GGG 0.705204 1:-62591557 MsaT003831.1:CDS
GTGTTGTCTGTAGAAGACAC+TGG 0.713454 1:-62594207 MsaT003831.1:CDS
TGTGGATGTGACATGCAGTG+TGG 0.717503 1:-62592244 MsaT003831.1:CDS
ATTAGATGAAACCAACAGTG+AGG 0.720508 1:-62592622 MsaT003831.1:CDS
AGATAGAAAGATCTATCCCG+GGG 0.720635 1:-62594082 MsaT003831.1:CDS
ATTCTGATACACATCTGACA+GGG 0.723160 1:+62592890 None:intergenic
GGAAATCGGGTAGTGCAACG+AGG 0.738617 1:-62592223 MsaT003831.1:CDS
GAAGGACTTAGGAATCTCGG+AGG 0.784980 1:-62594695 MsaT003831.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 62588955 62594761 62588955 ID=MsaG003831
Chr1 mRNA 62588955 62594761 62588955 ID=MsaT003831.1;Parent=MsaG003831
Chr1 exon 62588955 62589080 62588955 ID=MsaT003831.1.exon8;Parent=MsaT003831.1
Chr1 CDS 62588955 62589080 62588955 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Chr1 exon 62590414 62590464 62590414 ID=MsaT003831.1.exon7;Parent=MsaT003831.1
Chr1 CDS 62590414 62590464 62590414 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Chr1 exon 62590704 62590770 62590704 ID=MsaT003831.1.exon6;Parent=MsaT003831.1
Chr1 CDS 62590704 62590770 62590704 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Chr1 exon 62591473 62591738 62591473 ID=MsaT003831.1.exon5;Parent=MsaT003831.1
Chr1 CDS 62591473 62591738 62591473 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Chr1 exon 62592204 62592356 62592204 ID=MsaT003831.1.exon4;Parent=MsaT003831.1
Chr1 CDS 62592204 62592356 62592204 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Chr1 exon 62592398 62592951 62592398 ID=MsaT003831.1.exon3;Parent=MsaT003831.1
Chr1 CDS 62592398 62592951 62592398 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Chr1 exon 62593929 62594346 62593929 ID=MsaT003831.1.exon2;Parent=MsaT003831.1
Chr1 CDS 62593929 62594346 62593929 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Chr1 exon 62594549 62594761 62594549 ID=MsaT003831.1.exon1;Parent=MsaT003831.1
Chr1 CDS 62594549 62594761 62594549 ID=cds.MsaT003831.1;Parent=MsaT003831.1
Gene Sequence

>MsaT003831.1

ATGACCACTACTAATCCAAGGGCAATCAAGGCCCTTAATGCTATGAAGGACTTAGGAATCTCGGAGGTCGAGGTGACACCGGTGTTGAAAAAGTTGTATAAATTGTATGATAAAAAGTGGGAGCTTATTGAAGATGACAATTATCGGACACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGGCATACTTTGAGTCAAAGGAAGATAAGCAAGAAGATCATAAGAGAAAAGCTCCAGTAAGTTGTCATGATGGAGAGAAACCTAAACAGAAACTTCACTTGGTAGATATAGACAACCAGGTTTTATCAGCTGACAACTCAAGACAAGTGTTGTCTGTAGAAGACACTGGCATACCTCCCAAGACTTTTAAACAGGAAACTATGAAACCCTCTCAAATTTCCAGGCAAGATATGAATCCCACAACCAGTTCGCAGGCATTCATGGATGCTATAGATAGAAAGATCTATCCCGGGGCAGCATCATCTGCAGGTCATTGTAAAGATCCAATTGATGGACCTAGCCATCCTTCTATTCAGAGGAAAAATATGTCAAGTGATCAGAAGATTAAAGTATCAGGAAATGATAAACCTAAGTTTCATCCCGGATCTGTTTCGACAAGTTGCAATGGCTCACTAAATGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATACACACAAGATAGAAGCTACTCCCACATGCAATAATAACACCAGAACCTGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAAATTGTGATGCTGCATTAAGGACTGACTTGAATTTAAATCGAAATGGATCAAGGCAAACTCTTTCTGAGGATAAAAAGAAATCCTTTCGATATGTTGAAGACATAACAAAAGGTTCTGAAAACATTCACATATCATTATTAGATGAAACCAACAGTGAGGAATTTCCAAAATTTAATTACATTCCATGTAACACAATGTATCAAAGTGCAAATGTCAATATTTCACTTGCTCGGATTGCGGATGAGGATTGCTGCTCCGATTGTTCAGGCGACTGTCTTTCTTTGTCAATTCCTTGTGCATGCTCTCAAGAAACTGGTGGAGTGTTTGCTTACACTTCACAAGGTTTGTTGAGTGAAAAGTTTTTGACAGATTGCATGTCCATGTGCCCAATTGAGAGGACTAAGAATGAGACCAAACCTGAATCATGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAAGCCGTAAATTGCAGGTGTTCTTGACTCAAGAAGGAAAGGGCTGGGGCGTTAGAACACTAGAAGATTTGCCCAAGGGATCCTTTGTCTGTGAATATGCAGGGGAGATTTTAACCAATTCAGAATTATATGACAGGATTGTGCATAGTACCGGCAATGATAGACATACATATCCTGTAACACTTGATGCAGACTGGGGTTCGGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCTTCGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATCTTGCCCTTTTTACAAACAAAGATGTGAGAGCATACGAGGAGTTGACCTGGGATTATGGCATTGACTTTGATGACCATACCCATCCTATTGAAGCATTTCAATGTTGTTGTGGAAGCGCTTTCTGCCGTGATAAGAAACAAAAAGGTCTGTTTGATTATTTGCTTATCTGTGTTTGA

Protein sequence

>MsaT003831.1

MTTTNPRAIKALNAMKDLGISEVEVTPVLKKLYKLYDKKWELIEDDNYRTLIDAYFESKEDKAYFESKEDKQEDHKRKAPVSCHDGEKPKQKLHLVDIDNQVLSADNSRQVLSVEDTGIPPKTFKQETMKPSQISRQDMNPTTSSQAFMDAIDRKIYPGAASSAGHCKDPIDGPSHPSIQRKNMSSDQKIKVSGNDKPKFHPGSVSTSCNGSLNASNGNLTVKSLSDVYQNTHKIEATPTCNNNTRTCKGNIDIGSSSPLGEVKSSLNCDAALRTDLNLNRNGSRQTLSEDKKKSFRYVEDITKGSENIHISLLDETNSEEFPKFNYIPCNTMYQSANVNISLARIADEDCCSDCSGDCLSLSIPCACSQETGGVFAYTSQGLLSEKFLTDCMSMCPIERTKNETKPESCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLSRKLQVFLTQEGKGWGVRTLEDLPKGSFVCEYAGEILTNSELYDRIVHSTGNDRHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCFDANLIDIPVEVETPDRHYYHLALFTNKDVRAYEELTWDYGIDFDDHTHPIEAFQCCCGSAFCRDKKQKGLFDYLLICV*