AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG003841

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003841 MtrunA17_Chr1g0190391 98.496 798 12 0 1 798 1 798 0.0 1598
MsaG003841 MtrunA17_Chr1g0190381 98.704 540 7 0 799 1338 4 543 0.0 1119
MsaG003841 MtrunA17_Chr5g0393461 33.550 614 324 21 571 1170 173 716 4.28e-80 285
MsaG003841 MtrunA17_Chr8g0384531 27.581 620 342 16 573 1168 375 911 5.21e-57 216
MsaG003841 MtrunA17_Chr1g0183681 27.560 664 324 18 569 1186 378 930 1.67e-55 212
MsaG003841 MtrunA17_Chr4g0040301 30.199 553 309 16 620 1141 18 524 1.06e-53 201
MsaG003841 MtrunA17_Chr4g0066741 26.216 740 400 20 454 1166 41 661 1.78e-50 195
MsaG003841 MtrunA17_Chr2g0286291 27.406 748 394 20 443 1166 42 664 1.79e-48 189
MsaG003841 MtrunA17_Chr4g0017211 27.703 592 337 18 614 1179 1472 1998 1.37e-47 187
MsaG003841 MtrunA17_Chr5g0442141 27.715 617 329 17 555 1159 585 1096 5.58e-47 185
MsaG003841 MtrunA17_Chr4g0066651 28.669 586 307 15 569 1145 974 1457 2.93e-46 183
MsaG003841 MtrunA17_Chr2g0296421 24.610 577 340 12 576 1141 505 997 1.87e-45 179
MsaG003841 MtrunA17_Chr3g0137091 28.053 606 307 18 582 1169 289 783 3.26e-45 179
MsaG003841 MtrunA17_Chr8g0352361 26.207 580 328 16 576 1141 355 848 1.80e-44 175
MsaG003841 MtrunA17_Chr4g0047081 26.368 603 337 16 576 1144 660 1189 6.11e-44 174
MsaG003841 MtrunA17_Chr7g0233021 27.832 618 316 21 576 1144 649 1185 6.15e-44 174
MsaG003841 MtrunA17_Chr5g0403921 26.490 604 336 19 565 1160 167 670 1.14e-43 171
MsaG003841 MtrunA17_Chr3g0114161 26.710 614 350 20 576 1150 656 1208 2.52e-43 172
MsaG003841 MtrunA17_Chr1g0205891 28.014 589 298 19 569 1145 361 835 2.97e-43 172
MsaG003841 MtrunA17_Chr5g0394201 27.101 583 310 15 569 1145 348 821 1.91e-41 166
MsaG003841 MtrunA17_Chr4g0052341 26.362 569 310 17 609 1169 762 1229 1.14e-40 165
MsaG003841 MtrunA17_Chr7g0224051 26.446 605 359 22 576 1150 529 1077 6.47e-40 161
MsaG003841 MtrunA17_Chr1g0163011 27.454 652 384 20 518 1149 140 722 2.32e-39 157
MsaG003841 MtrunA17_Chr7g0233001 26.277 548 299 17 628 1144 1 474 2.62e-35 142
MsaG003841 MtrunA17_Chr7g0248031 25.565 575 318 20 553 1115 964 1440 2.82e-31 134
MsaG003841 MtrunA17_Chr8g0348721 25.312 561 318 17 562 1115 966 1432 1.83e-30 131
MsaG003841 MtrunA17_Chr1g0175191 27.439 492 279 17 434 908 381 811 4.53e-30 130
MsaG003841 MtrunA17_Chr1g0175191 35.583 163 91 2 983 1145 1062 1210 2.11e-21 102
MsaG003841 MtrunA17_Chr3g0095091 36.757 185 104 2 974 1158 878 1049 5.74e-25 113
MsaG003841 MtrunA17_Chr3g0095091 25.588 340 199 9 580 910 569 863 1.60e-20 99.0
MsaG003841 MtrunA17_Chr5g0437621 30.159 252 142 10 564 788 701 945 1.14e-23 108
MsaG003841 MtrunA17_Chr5g0437621 36.095 169 100 2 976 1144 1098 1258 1.71e-20 98.6
MsaG003841 MtrunA17_Chr7g0232971 38.728 173 99 2 984 1156 1098 1263 1.57e-23 108
MsaG003841 MtrunA17_Chr7g0232971 29.070 258 145 10 574 796 712 966 5.30e-22 103
MsaG003841 MtrunA17_Chr7g0225791 37.888 161 92 2 984 1144 1087 1239 1.09e-22 105
MsaG003841 MtrunA17_Chr7g0225791 28.631 241 140 8 576 788 710 946 5.98e-22 103
MsaG003841 MtrunA17_Chr7g0233031 28.405 257 146 8 576 796 669 923 1.83e-22 105
MsaG003841 MtrunA17_Chr7g0233031 36.810 163 90 3 984 1144 1047 1198 1.37e-19 95.9
MsaG003841 MtrunA17_Chr1g0191141 25.356 351 204 10 576 876 516 858 1.12e-21 102
MsaG003841 MtrunA17_Chr1g0191141 34.969 163 94 4 991 1150 910 1063 9.51e-19 92.8
MsaG003841 MtrunA17_Chr2g0320781 38.065 155 88 3 984 1138 94 240 2.06e-21 95.1
MsaG003841 MtrunA17_Chr7g0232991 37.126 167 96 2 984 1150 462 619 6.83e-21 99.0
MsaG003841 MtrunA17_Chr7g0257101 37.278 169 92 3 977 1145 1186 1340 7.20e-20 96.7
MsaG003841 MtrunA17_Chr7g0257101 27.907 301 182 8 571 867 567 836 1.39e-19 95.9
MsaG003841 MtrunA17_Chr1g0168031 33.158 190 111 4 975 1163 978 1152 5.20e-19 94.0
MsaG003841 MtrunA17_Chr2g0320751 31.088 193 118 4 971 1163 838 1015 5.35e-17 87.0
MsaG003841 MtrunA17_Chr1g0212331 35.211 142 78 2 1001 1142 887 1014 5.69e-16 84.0
MsaG003841 MtrunA17_Chr7g0231521 32.955 176 96 3 979 1144 282 445 1.09e-15 82.8
MsaG003841 MtrunA17_Chr7g0232121 33.523 176 95 3 979 1144 361 524 1.57e-15 82.4
MsaG003841 MtrunA17_Chr2g0281601 36.301 146 79 2 997 1142 1146 1277 6.18e-15 80.5
MsaG003841 MtrunA17_Chr4g0069451 32.278 158 92 3 974 1131 462 604 5.37e-14 77.0
MsaG003841 MtrunA17_Chr7g0255821 34.615 182 89 5 978 1146 643 807 2.64e-13 75.1
MsaG003841 MtrunA17_Chr7g0255821 26.394 269 156 8 612 866 250 490 6.32e-12 70.5
MsaG003841 MtrunA17_Chr4g0024921 33.333 138 78 2 1001 1138 784 907 1.29e-11 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG003841 AT1G08600.4 70.656 869 231 11 476 1336 615 1467 0.0 1215
MsaG003841 AT1G08600.4 59.813 321 128 1 2 321 66 386 1.62e-99 350
MsaG003841 AT1G08600.3 70.656 869 231 11 476 1336 615 1467 0.0 1215
MsaG003841 AT1G08600.3 59.813 321 128 1 2 321 66 386 1.62e-99 350
MsaG003841 AT1G08600.2 70.656 869 231 11 476 1336 615 1467 0.0 1215
MsaG003841 AT1G08600.2 59.813 321 128 1 2 321 66 386 1.62e-99 350
MsaG003841 AT1G08600.1 68.700 869 227 13 476 1336 615 1446 0.0 1159
MsaG003841 AT1G08600.1 59.813 321 128 1 2 321 66 386 1.51e-99 350
MsaG003841 AT3G19210.3 30.303 660 347 17 561 1178 134 722 1.85e-78 276
MsaG003841 AT3G19210.1 30.408 661 345 17 561 1178 134 722 1.28e-77 277
MsaG003841 AT3G19210.2 29.652 661 348 17 561 1178 134 720 1.81e-73 265
MsaG003841 AT1G03750.1 30.413 605 333 16 572 1145 129 676 1.57e-63 234
MsaG003841 AT5G63950.1 26.901 684 401 19 574 1240 369 970 9.15e-55 209
MsaG003841 AT2G18760.4 27.245 657 330 17 569 1184 372 921 3.41e-53 204
MsaG003841 AT2G18760.1 27.245 657 330 17 569 1184 372 921 3.41e-53 204
MsaG003841 AT2G18760.2 27.245 657 330 17 569 1184 372 921 3.41e-53 204
MsaG003841 AT2G18760.7 27.245 657 330 17 569 1184 372 921 3.41e-53 204
MsaG003841 AT2G18760.5 27.245 657 330 17 569 1184 372 921 3.41e-53 204
MsaG003841 AT2G18760.6 27.245 657 330 17 569 1184 372 921 3.41e-53 204
MsaG003841 AT2G18760.3 27.397 657 329 17 569 1184 431 980 6.04e-53 204
MsaG003841 AT5G63950.2 26.369 694 375 19 574 1240 369 953 7.39e-52 200
MsaG003841 AT2G21450.2 27.563 595 330 20 570 1141 260 776 9.45e-51 194
MsaG003841 AT2G21450.1 27.441 594 332 19 570 1141 253 769 1.23e-50 194
MsaG003841 AT2G21450.3 27.563 595 330 20 570 1141 162 678 1.58e-50 192
MsaG003841 AT5G19310.2 28.499 593 305 19 561 1145 99 580 2.79e-50 192
MsaG003841 AT5G19310.1 28.718 585 298 19 569 1145 371 844 2.21e-49 192
MsaG003841 AT5G18620.2 27.422 609 321 15 563 1166 175 667 2.45e-48 189
MsaG003841 AT5G18620.1 27.422 609 321 15 563 1166 175 667 2.54e-48 189
MsaG003841 AT3G06400.1 28.141 597 308 16 575 1166 182 662 3.26e-48 188
MsaG003841 AT3G06400.3 28.141 597 308 16 575 1166 182 662 3.28e-48 188
MsaG003841 AT3G06400.2 28.141 597 308 16 575 1166 182 662 3.35e-48 188
MsaG003841 AT2G13370.1 27.877 617 324 17 555 1158 593 1101 2.46e-47 187
MsaG003841 AT2G13370.2 27.877 617 324 17 555 1158 593 1101 2.46e-47 187
MsaG003841 AT2G13370.3 27.877 617 324 17 555 1158 593 1101 2.46e-47 187
MsaG003841 AT1G05490.1 26.030 607 340 15 576 1144 817 1352 1.22e-46 184
MsaG003841 AT2G25170.2 28.595 612 310 19 575 1169 283 784 1.23e-46 184
MsaG003841 AT2G25170.1 28.595 612 310 19 575 1169 266 767 1.63e-46 184
MsaG003841 AT2G25170.4 28.595 612 310 19 575 1169 266 767 1.63e-46 184
MsaG003841 AT2G25170.3 28.595 612 310 19 575 1169 292 793 1.96e-46 183
MsaG003841 AT4G31900.3 26.707 659 332 18 565 1215 208 723 2.47e-46 182
MsaG003841 AT4G31900.1 26.707 659 332 18 565 1215 208 723 3.13e-46 182
MsaG003841 AT4G31900.2 26.707 659 332 18 565 1215 167 682 3.69e-46 182
MsaG003841 AT2G28290.3 28.348 575 303 16 578 1145 750 1222 1.86e-45 181
MsaG003841 AT2G28290.4 28.348 575 303 16 578 1145 750 1222 1.86e-45 181
MsaG003841 AT2G28290.6 28.348 575 303 16 578 1145 751 1223 1.88e-45 181
MsaG003841 AT2G28290.1 28.348 575 303 16 578 1145 750 1222 2.10e-45 181
MsaG003841 AT2G16390.2 25.845 592 321 16 576 1141 347 846 2.11e-45 178
MsaG003841 AT2G28290.5 28.348 575 303 16 578 1145 751 1223 2.29e-45 181
MsaG003841 AT2G28290.2 28.348 575 303 16 578 1145 750 1222 2.59e-45 181
MsaG003841 AT2G16390.1 25.845 592 321 16 576 1141 344 843 2.63e-45 178
MsaG003841 AT3G54280.1 27.939 587 311 18 614 1163 1473 1984 2.14e-44 177
MsaG003841 AT3G54280.2 27.939 587 311 18 614 1163 1504 2015 3.95e-44 176
MsaG003841 AT5G44800.1 26.418 617 336 19 562 1169 666 1173 6.57e-44 176
MsaG003841 AT3G24340.1 25.559 626 349 21 576 1164 571 1116 2.55e-41 166
MsaG003841 AT2G02090.1 27.428 587 342 18 582 1146 213 737 6.87e-37 150
MsaG003841 AT3G06010.1 26.109 586 313 19 569 1145 388 862 1.83e-35 147
MsaG003841 AT2G46020.5 26.354 554 307 19 569 1115 967 1426 4.22e-31 134
MsaG003841 AT2G46020.1 26.354 554 307 19 569 1115 967 1426 4.22e-31 134
MsaG003841 AT2G46020.6 26.354 554 307 19 569 1115 967 1426 4.22e-31 134
MsaG003841 AT2G46020.2 26.306 555 307 19 569 1115 967 1427 9.66e-31 133
MsaG003841 AT2G46020.3 26.306 555 307 19 569 1115 967 1427 9.66e-31 133
MsaG003841 AT2G46020.4 26.306 555 307 19 569 1115 967 1427 9.66e-31 133
MsaG003841 AT3G12810.1 30.205 341 194 11 572 908 526 826 4.14e-30 130
MsaG003841 AT3G12810.1 35.583 163 91 2 983 1145 1075 1223 1.58e-20 99.8
MsaG003841 AT3G12810.2 30.205 341 194 11 572 908 522 822 4.47e-30 130
MsaG003841 AT3G12810.2 35.583 163 91 2 983 1145 1071 1219 1.50e-20 99.8
MsaG003841 AT3G42670.2 30.522 249 142 7 566 789 658 900 1.01e-24 112
MsaG003841 AT3G42670.2 32.240 183 116 2 968 1150 1041 1215 1.07e-20 99.8
MsaG003841 AT3G42670.3 30.522 249 142 7 566 789 658 900 1.01e-24 112
MsaG003841 AT3G42670.3 32.240 183 116 2 968 1150 1041 1215 1.07e-20 99.8
MsaG003841 AT3G42670.1 30.522 249 142 7 566 789 658 900 1.01e-24 112
MsaG003841 AT3G42670.1 32.240 183 116 2 968 1150 1041 1215 1.07e-20 99.8
MsaG003841 AT3G42670.4 30.522 249 142 7 566 789 660 902 1.03e-24 112
MsaG003841 AT3G42670.4 32.240 183 116 2 968 1150 1043 1217 1.03e-20 99.8
MsaG003841 AT5G20420.1 31.535 241 131 9 576 789 673 906 2.48e-24 111
MsaG003841 AT5G20420.1 32.941 170 106 2 981 1150 1060 1221 1.07e-20 99.8
MsaG003841 AT5G66750.1 36.181 199 101 5 969 1156 501 684 4.78e-23 106
MsaG003841 AT1G02670.6 25.801 593 338 22 592 1140 103 637 4.67e-21 100
MsaG003841 AT1G02670.3 25.801 593 338 22 592 1140 130 664 9.49e-21 99.4
MsaG003841 AT1G02670.1 25.907 579 332 23 592 1140 141 652 1.73e-20 98.2
MsaG003841 AT1G02670.7 25.907 579 332 23 592 1140 130 641 2.28e-20 97.8
MsaG003841 AT5G43530.1 33.163 196 114 4 970 1163 1096 1276 3.31e-20 98.2
MsaG003841 AT3G57300.1 36.686 169 93 3 977 1145 1200 1354 1.62e-19 96.3
MsaG003841 AT3G57300.4 36.686 169 93 3 977 1145 1200 1354 1.62e-19 96.3
MsaG003841 AT3G57300.2 36.686 169 93 3 977 1145 1233 1387 2.05e-19 95.9
MsaG003841 AT3G57300.2 25.153 326 192 9 571 867 575 877 1.06e-17 90.1
MsaG003841 AT5G22750.1 31.088 193 118 3 971 1163 851 1028 3.37e-17 88.2
MsaG003841 AT3G20010.2 36.620 142 76 2 1001 1142 603 730 8.19e-17 86.7
MsaG003841 AT3G20010.3 36.620 142 76 2 1001 1142 628 755 9.27e-17 86.7
MsaG003841 AT3G20010.1 36.620 142 76 2 1001 1142 894 1021 1.47e-16 86.3
MsaG003841 AT3G20010.5 36.620 142 76 2 1001 1142 894 1021 1.47e-16 86.3
MsaG003841 AT3G20010.7 36.620 142 76 2 1001 1142 894 1021 1.47e-16 86.3
MsaG003841 AT2G44980.1 32.335 167 100 2 979 1145 364 517 1.68e-15 82.4
MsaG003841 AT1G61140.1 33.333 171 93 4 998 1163 1122 1276 4.13e-15 81.6
MsaG003841 AT1G50410.2 36.364 143 75 3 1001 1142 828 955 4.20e-15 81.3
MsaG003841 AT1G50410.1 36.364 143 75 3 1001 1142 828 955 4.20e-15 81.3
MsaG003841 AT1G50410.3 36.364 143 75 3 1001 1142 828 955 4.20e-15 81.3
MsaG003841 AT1G61140.3 33.529 170 92 4 999 1163 965 1118 5.45e-15 81.3
MsaG003841 AT2G44980.2 30.682 176 101 2 979 1145 373 536 7.37e-15 80.5
MsaG003841 AT2G44980.3 30.682 176 101 2 979 1145 372 535 7.49e-15 80.5
MsaG003841 AT1G11100.4 31.579 171 100 3 996 1163 1112 1268 1.92e-14 79.3
MsaG003841 AT1G11100.2 31.579 171 100 3 996 1163 1111 1267 1.99e-14 79.3
MsaG003841 AT1G11100.1 31.579 171 100 3 996 1163 1068 1224 2.00e-14 79.3
MsaG003841 AT1G11100.3 31.579 171 100 3 996 1163 969 1125 2.06e-14 79.3
MsaG003841 AT1G11100.5 31.579 171 100 3 996 1163 925 1081 2.23e-14 79.0
MsaG003841 AT1G05120.1 32.317 164 96 3 1001 1163 682 831 2.41e-12 72.4
MsaG003841 AT1G05120.2 32.317 164 96 3 1001 1163 725 874 2.86e-12 72.0
MsaG003841 AT5G05130.1 31.737 167 100 2 1001 1165 727 881 3.40e-12 72.0
MsaG003841 AT1G48310.1 29.474 190 119 3 971 1160 457 631 1.95e-11 69.3
MsaG003841 AT1G48310.2 29.474 190 119 3 971 1160 462 636 2.01e-11 68.9
MsaG003841 AT2G40770.2 30.675 163 106 2 970 1132 1424 1579 2.16e-11 69.3
MsaG003841 AT2G40770.1 30.675 163 106 2 970 1132 1424 1579 2.16e-11 69.3
MsaG003841 AT2G40770.3 30.675 163 106 2 970 1132 1424 1579 2.16e-11 69.3
MsaG003841 AT1G48310.3 32.298 161 94 3 971 1131 457 602 6.79e-11 67.4

Find 293 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAATGAGCCTCTGAATAAA+AGG 0.180734 1:-62685534 MsaT003841.1:CDS
CTAGTTCCTTCCTTTGTATC+AGG 0.185742 1:+62698495 None:intergenic
TGAACAAAGTAATCCGATTT+TGG 0.201774 1:-62683937 MsaT003841.1:CDS
CAACATTCATGTCCATTCTT+TGG 0.205545 1:+62688521 None:intergenic
GACCATTCTCTATAGGATTT+TGG 0.207529 1:+62688626 None:intergenic
GCCTTTGACACTTCTGGCTT+TGG 0.215891 1:+62680983 None:intergenic
ATGCTGCATCTCTTTGAATT+TGG 0.217787 1:-62683996 MsaT003841.1:CDS
AGCTGCCAAGTTTCTAATTC+AGG 0.220467 1:+62680947 None:intergenic
CTCTTTCAATCAACTTATAA+AGG 0.226194 1:+62702815 None:intergenic
TTTCCAAGTTCCAGAGTTTC+AGG 0.228610 1:+62702527 None:intergenic
ATGGAGGCCACTAAAATTAA+AGG 0.238368 1:-62698423 MsaT003841.1:CDS
GACTTGGGCTTCTGTTTATT+TGG 0.240284 1:-62702423 MsaT003841.1:CDS
AACTGAAAGTTCCCACTTAC+TGG 0.253546 1:-62703552 MsaT003841.1:intron
CAGTTATTCTGATAAGTTAA+TGG 0.262301 1:-62683871 MsaT003841.1:CDS
CTGTAAATGTGCTACATAAT+TGG 0.270452 1:-62692729 MsaT003841.1:CDS
ATCCTCTATGAACAATTAAA+AGG 0.274422 1:-62688550 MsaT003841.1:CDS
AGAAGAGTGGGAAGCTGTTC+TGG 0.275398 1:-62703585 MsaT003841.1:CDS
TAATCGGCTATGCTGCTTTC+CGG 0.275503 1:-62691328 MsaT003841.1:CDS
GCTTTCCGGAATTTGTCTTT+TGG 0.275917 1:-62691314 MsaT003841.1:CDS
ATCATCACCCAGTGGAGATT+TGG 0.278438 1:+62698335 None:intergenic
CTCTTCTTCAAGAGTTTCTT+GGG 0.278664 1:+62703791 None:intergenic
CAATTATGTAGCACATTTAC+AGG 0.279145 1:+62692730 None:intergenic
TGTTATCACGAAAACAGTTT+TGG 0.279547 1:+62688480 None:intergenic
TCCGTTGTCAAGATGAAAAT+TGG 0.281770 1:+62698392 None:intergenic
AGAACTTTGCCATGCTTTGC+AGG 0.288309 1:-62691261 MsaT003841.1:intron
AAAAGCCTGTGTTTGCTTAT+CGG 0.293984 1:-62684213 MsaT003841.1:CDS
GGTAATAGCTTTCTTGTATA+CGG 0.296703 1:-62692800 MsaT003841.1:CDS
GGGCCTGGGTAAAACATTTC+AGG 0.297471 1:-62696562 MsaT003841.1:intron
TCTATTTCCGCCTCCGTTAG+AGG 0.298667 1:+62707422 None:intergenic
CAGGCGACATGGAAAATTAT+TGG 0.305374 1:-62702588 MsaT003841.1:CDS
GGCAATGAGAAGTGTTGATT+TGG 0.306108 1:-62692779 MsaT003841.1:CDS
AATCGTGTTGTTATAGTTGA+TGG 0.306476 1:-62685451 MsaT003841.1:CDS
GTGAATGTTGTGAGAGAAAA+AGG 0.307732 1:-62697158 MsaT003841.1:CDS
ACTCTTCTTCAAGAGTTTCT+TGG 0.314822 1:+62703790 None:intergenic
GATATACCCGTTTCCAGTTC+TGG 0.315917 1:-62698222 MsaT003841.1:CDS
CAGCATTTCTTCTTTAGATA+TGG 0.319091 1:+62684013 None:intergenic
TTGGAAGCAGTCATGAGTTT+AGG 0.321636 1:-62688741 MsaT003841.1:CDS
CAAGGCTGCAGGTTTGAATA+TGG 0.324481 1:-62698442 MsaT003841.1:CDS
TTCCCACATGAATCTTATTC+CGG 0.334927 1:+62696656 None:intergenic
AAATCATTGGGTTGGGTCTC+AGG 0.335239 1:-62702752 MsaT003841.1:CDS
GATTGATCAAAGTGGCAAAA+TGG 0.335872 1:-62686198 MsaT003841.1:CDS
GACACTTCTGGCTTTGGATC+AGG 0.337059 1:+62680989 None:intergenic
TGTGTTTGCTTATCGGTTGC+TGG 0.338471 1:-62684206 MsaT003841.1:CDS
GCAAAGAAGACAATTTAAAA+AGG 0.344777 1:-62701288 MsaT003841.1:intron
AGATTCATGTAAATGATAAT+TGG 0.347135 1:+62681132 None:intergenic
CTGGCACTTTACTTGTTTCA+AGG 0.347248 1:+62688933 None:intergenic
CAGAGATAAATGTTTCAATA+AGG 0.348051 1:-62698143 MsaT003841.1:intron
TCAACCCGAGCAGGCTCTTT+GGG 0.348310 1:-62685493 MsaT003841.1:CDS
TTCAACCCGAGCAGGCTCTT+TGG 0.353917 1:-62685494 MsaT003841.1:CDS
CCTCGTTTGGCAGTAAGACT+TGG 0.360033 1:-62702439 MsaT003841.1:CDS
GAATCCAACATATGATCTTC+AGG 0.360132 1:-62685422 MsaT003841.1:CDS
GATACTTGATGACACTGAAT+TGG 0.362598 1:-62697434 MsaT003841.1:CDS
TCCGATTCTAATGTGCTTGC+TGG 0.363559 1:-62686994 MsaT003841.1:CDS
GTGTGTTGACCATTCTCTAT+AGG 0.363761 1:+62688619 None:intergenic
TTGTTATAGTTGATGGTTCT+TGG 0.365963 1:-62685444 MsaT003841.1:CDS
CTCTAATGTTAAGGAAAATC+AGG 0.369855 1:-62688398 MsaT003841.1:CDS
AATTTCAACGCTTGCACCTT+CGG 0.370186 1:+62697208 None:intergenic
CAAAGCATGGCAAAGTTCTC+TGG 0.370652 1:+62691265 None:intergenic
CAGAGAAGAATTGCACTTAC+AGG 0.371704 1:-62688913 MsaT003841.1:CDS
CTTCTAACAGCTCAGAAATA+AGG 0.376786 1:+62707396 None:intergenic
CAATCAACTTATAAAGGCTT+GGG 0.382602 1:+62702821 None:intergenic
TCAATCAACTTATAAAGGCT+TGG 0.384018 1:+62702820 None:intergenic
GGCAGCTTGCTGTGGAGTGC+TGG 0.384057 1:+62702400 None:intergenic
AATGTGCCCGGGTGGTAAGG+TGG 0.386260 1:-62680814 MsaT003841.1:CDS
ACTAGCTCTGCTGGCTGTAA+TGG 0.386936 1:-62697239 MsaT003841.1:CDS
TGAATCACTACTACCAGAAC+TGG 0.387184 1:+62698209 None:intergenic
TCCACAGCAAGCTGCCTTGA+TGG 0.387956 1:-62702393 MsaT003841.1:CDS
GGTGCAAGCGTTGAAATTCT+TGG 0.389818 1:-62697203 MsaT003841.1:CDS
TCATCACCCAGTGGAGATTT+GGG 0.392049 1:+62698336 None:intergenic
AAGTGAAGTTAGACAAGAAT+TGG 0.396439 1:-62703751 MsaT003841.1:CDS
GTAAATGTTGAGAGTGCTTC+TGG 0.398352 1:-62707687 MsaT003841.1:CDS
CTAGCTCTGCTGGCTGTAAT+GGG 0.400541 1:-62697238 MsaT003841.1:CDS
GATATAGCTCTATGAGGTCT+AGG 0.400654 1:+62686099 None:intergenic
TTGATGGGACTCGAATTTCC+TGG 0.401476 1:-62702377 MsaT003841.1:CDS
CATAGAGGATGTGAGACCTT+TGG 0.401782 1:+62688563 None:intergenic
CTGGTGGAAAGATATTCTTC+AGG 0.403942 1:-62686237 MsaT003841.1:CDS
TTCCCTCGCTTTCCACTTCG+TGG 0.404393 1:+62686065 None:intergenic
GCTTTCCAAAAGACAAATTC+CGG 0.405052 1:+62691309 None:intergenic
CTTAGTTCAGCCAAAGTCTC+AGG 0.412124 1:+62683960 None:intergenic
TAAGAACCGTACCTTCTAAC+AGG 0.412504 1:+62702670 None:intergenic
TGACGAGAATCCTGAGACTT+TGG 0.412903 1:-62683970 MsaT003841.1:CDS
AGTGAATCCCCGGCCAAAAT+CGG 0.415327 1:+62683924 None:intergenic
GCTTATCGGTTGCTGGCTCA+TGG 0.417807 1:-62684199 MsaT003841.1:CDS
AAATTCTCAACAGCATCTTC+AGG 0.422401 1:+62687045 None:intergenic
TCAATCAGAAAAGTTAAGTC+TGG 0.425797 1:-62696621 MsaT003841.1:CDS
GGGAATGTGCCCGGGTGGTA+AGG 0.426245 1:-62680817 MsaT003841.1:CDS
TCTCCTGAAACTCTGGAACT+TGG 0.428248 1:-62702530 MsaT003841.1:CDS
AGTGGTATTGATGCCTCGTT+TGG 0.428657 1:-62702452 MsaT003841.1:CDS
GTTGCTGGCTCATGGAACTA+TGG 0.429512 1:-62684191 MsaT003841.1:CDS
GTTTCATATCTACAGATTGC+CGG 0.430731 1:-62696675 MsaT003841.1:intron
GCAATGAGAAGTGTTGATTT+GGG 0.431839 1:-62692778 MsaT003841.1:CDS
AAATAAACAGACCTGTTAGA+AGG 0.433026 1:-62702681 MsaT003841.1:intron
AGAAGGGAAGAGATTGGTAT+AGG 0.435171 1:-62686034 MsaT003841.1:intron
AGTGGGAACTTTCAGTTTCA+AGG 0.438133 1:+62703558 None:intergenic
GCAATGGCTGCTGCAACAAA+TGG 0.438259 1:+62701341 None:intergenic
AAAGGTGGTGTACTGTTAAT+CGG 0.441566 1:-62691344 MsaT003841.1:CDS
AAAAGGCTTTGTCCAAAGAA+TGG 0.441822 1:-62688533 MsaT003841.1:CDS
AAAGTTAAGTCTGGAGATAA+AGG 0.443967 1:-62696612 MsaT003841.1:CDS
AAGTCTGGAGATAAAGGTCT+AGG 0.444205 1:-62696606 MsaT003841.1:CDS
GAGTTCTGCCGTGGGTGATA+AGG 0.444536 1:-62686150 MsaT003841.1:CDS
AAGTTAATGGAAAGCTTACT+AGG 0.447487 1:-62683858 MsaT003841.1:CDS
TTTGAATAGGAACAACTTGA+TGG 0.448122 1:-62702859 MsaT003841.1:intron
AGCAAAGCTGAAAGCCCATC+AGG 0.448764 1:-62697102 MsaT003841.1:intron
GCTGTTAGAAGTTGAGAGTA+AGG 0.449816 1:-62707384 MsaT003841.1:intron
CTGTAAGTGCAATTCTTCTC+TGG 0.449880 1:+62688914 None:intergenic
TCATCACACACAAGAATGTC+AGG 0.455112 1:+62688997 None:intergenic
TCATGCTGGAAGATGTATCT+AGG 0.455740 1:-62692654 MsaT003841.1:intron
TCTTGACAACGGAAAGCCTA+TGG 0.455909 1:-62698382 MsaT003841.1:CDS
GCGAGGGAAGCTGTGGAAGA+AGG 0.455933 1:-62686051 MsaT003841.1:CDS
GCTTCAGTGCAACAACGATC+TGG 0.456332 1:+62702787 None:intergenic
CTCACCGTCATTTAGACGCT+TGG 0.456602 1:+62698296 None:intergenic
CAGTCTGTGGGGAATGTGCC+CGG 0.457074 1:-62680826 MsaT003841.1:CDS
ATCAGGAAAATTTAAGAAAG+AGG 0.457708 1:-62688381 MsaT003841.1:CDS
TTCAGCTTTGCTGAAATGCT+CGG 0.459184 1:+62697113 None:intergenic
ATACTTGATGACACTGAATT+GGG 0.459511 1:-62697433 MsaT003841.1:CDS
GCATGGGTTCTCTAATGTTA+AGG 0.459575 1:-62688407 MsaT003841.1:CDS
AGATCCTCCCAAATCTCCAC+TGG 0.462293 1:-62698343 MsaT003841.1:CDS
ACTGTACTCTCAAAGACTTC+AGG 0.462679 1:+62697282 None:intergenic
ATCAAAAGAGGAGCAAGATA+TGG 0.463169 1:-62681080 MsaT003841.1:CDS
TTTAGTCGCTTTAATTCTGA+TGG 0.464232 1:+62692682 None:intergenic
TCTAACTTCACTTTCCACTT+TGG 0.464251 1:+62703761 None:intergenic
TTGGAAAGCACGTGAAAGAC+CGG 0.468320 1:-62691295 MsaT003841.1:CDS
AGAATTGGAGCAAACTCTAC+AGG 0.475336 1:-62703736 MsaT003841.1:CDS
CTCGCCAAATGGAGAGCAAA+AGG 0.479689 1:-62691362 MsaT003841.1:CDS
AGGATGATGCAATTGTTGAT+AGG 0.480239 1:-62698954 MsaT003841.1:CDS
TCGTTCGACACTAGCTCTGC+TGG 0.480274 1:-62697248 MsaT003841.1:CDS
GGGCACAATTGCTCGCCAAA+TGG 0.482899 1:-62691373 MsaT003841.1:CDS
CCACAGCAAGCTGCCTTGAT+GGG 0.483420 1:-62702392 MsaT003841.1:CDS
CCGCCAAGGAAGGATGGTAA+TGG 0.486764 1:-62686699 MsaT003841.1:CDS
ACCTCTTCAAAACAATCTCA+TGG 0.487903 1:-62688887 MsaT003841.1:CDS
TTTCACTAGGTTACAAAAGA+GGG 0.488447 1:-62684077 MsaT003841.1:intron
CATACAGTACCACATTCAAA+TGG 0.489317 1:-62683897 MsaT003841.1:CDS
AAAAGCGAAATCATTGGGTT+GGG 0.489418 1:-62702759 MsaT003841.1:CDS
AAGAGGAGCAAGATATGGCT+TGG 0.489842 1:-62681075 MsaT003841.1:CDS
GATAGAATAAAACCAGTAAG+TGG 0.489927 1:+62703540 None:intergenic
TGTGGAAGAAGGGAAGAGAT+TGG 0.490309 1:-62686040 MsaT003841.1:CDS
ACTACTACCAGAACTGGAAA+CGG 0.490473 1:+62698215 None:intergenic
TCTAGCGCATACCATGGGCC+TGG 0.490607 1:-62696577 MsaT003841.1:CDS
CTGGGTATCAGGCATTAGCT+CGG 0.490787 1:-62688348 MsaT003841.1:CDS
CTCGTTTGGCAGTAAGACTT+GGG 0.491551 1:-62702438 MsaT003841.1:CDS
TTCCAAAATCCTATAGAGAA+TGG 0.491699 1:-62688628 MsaT003841.1:CDS
AATCCATTACCATCCTTCCT+TGG 0.493149 1:+62686696 None:intergenic
GAAGAAATTGATGATATTGA+TGG 0.495281 1:-62701377 MsaT003841.1:CDS
TGTATCGCAAATCGCTGGAA+TGG 0.496073 1:-62681048 MsaT003841.1:CDS
TAGTTCCTTCCTTTGTATCA+GGG 0.497507 1:+62698496 None:intergenic
ACATTTACCACTTCATCCTC+AGG 0.499261 1:+62707702 None:intergenic
AAGGAAGGAACTAGCGATGA+AGG 0.501096 1:-62698486 MsaT003841.1:CDS
CTACTACCAGAACTGGAAAC+GGG 0.501506 1:+62698216 None:intergenic
TAATGAGCCTCTGAATAAAA+GGG 0.504753 1:-62685533 MsaT003841.1:CDS
CCATTACCATCCTTCCTTGG+CGG 0.505193 1:+62686699 None:intergenic
TCCAGCAAGCACATTAGAAT+CGG 0.505461 1:+62686993 None:intergenic
AAGAGATTCATTGACGTGCA+TGG 0.505631 1:-62688424 MsaT003841.1:CDS
GGAGGACGGAGTTCATCAAA+TGG 0.507672 1:-62692708 MsaT003841.1:CDS
CTAGCGCATACCATGGGCCT+GGG 0.510592 1:-62696576 MsaT003841.1:CDS
ATCAGAATTAAAGCGACTAA+AGG 0.510850 1:-62692680 MsaT003841.1:CDS
TCAATTTAACCCTGATACAA+AGG 0.511464 1:-62698505 MsaT003841.1:CDS
GTATCGCAAATCGCTGGAAT+GGG 0.513417 1:-62681047 MsaT003841.1:CDS
TAATACCCAAAGAGCCTGCT+CGG 0.513600 1:+62685488 None:intergenic
CGAGGGAAGCTGTGGAAGAA+GGG 0.514723 1:-62686050 MsaT003841.1:CDS
TTCAGGCTATCTATCGAGCT+TGG 0.515017 1:-62685405 MsaT003841.1:CDS
AAAGAAAATAGCAATTGAAA+AGG 0.515650 1:-62697398 MsaT003841.1:intron
AAAGTTCTCTGGCCATCTCC+CGG 0.516000 1:+62691276 None:intergenic
GCGACTAAAGGTCTTCATGC+TGG 0.521482 1:-62692668 MsaT003841.1:CDS
TTCAAGTACGTTTGAAACAC+AGG 0.522320 1:-62698927 MsaT003841.1:CDS
TAGAGTGGTCGATAGACAAC+AGG 0.524795 1:-62684045 MsaT003841.1:CDS
TAGGAACAACTTGATGGTGC+TGG 0.526055 1:-62702853 MsaT003841.1:CDS
AGAGGAGCAAGATATGGCTT+GGG 0.527149 1:-62681074 MsaT003841.1:CDS
ATGTGCCCGGGTGGTAAGGT+GGG 0.529377 1:-62680813 MsaT003841.1:CDS
AACTGCTGTTGCTGATGAGA+TGG 0.530318 1:-62703618 MsaT003841.1:CDS
GTTTCACTAGGTTACAAAAG+AGG 0.535140 1:-62684078 MsaT003841.1:intron
TGGAAAGCACGTGAAAGACC+GGG 0.535783 1:-62691294 MsaT003841.1:CDS
TTTGCCATTTGCAAAATCCC+AGG 0.538913 1:+62687090 None:intergenic
CCCATCAAGGCAGCTTGCTG+TGG 0.539061 1:+62702392 None:intergenic
GGAGGTGTATCGCAAATCGC+TGG 0.539524 1:-62681053 MsaT003841.1:CDS
AGAGATTCATTGACGTGCAT+GGG 0.539562 1:-62688423 MsaT003841.1:CDS
ATAGCTACCTCGTTGACTCC+AGG 0.539860 1:+62702359 None:intergenic
TGGTGGAAAGATATTCTTCA+GGG 0.540061 1:-62686236 MsaT003841.1:CDS
AGAAGAGTCTCTTGCCAAAG+TGG 0.540913 1:-62703775 MsaT003841.1:CDS
ACATGGAAAATTATTGGAAG+AGG 0.541822 1:-62702582 MsaT003841.1:CDS
GTACATGGCTCTCCATCGAC+AGG 0.542623 1:+62698547 None:intergenic
ATCACCCACGGCAGAACTCA+TGG 0.542653 1:+62686154 None:intergenic
ATCGTTGTTGCACTGAAGCA+TGG 0.543442 1:-62702783 MsaT003841.1:CDS
AGGAAATTCGAGTCCCATCA+AGG 0.543720 1:+62702379 None:intergenic
GAATTGGAGCAAACTCTACA+GGG 0.544283 1:-62703735 MsaT003841.1:CDS
ACACTTATTTCAACCCGAGC+AGG 0.545519 1:-62685502 MsaT003841.1:CDS
TAAATGTGCTACATAATTGG+AGG 0.545640 1:-62692726 MsaT003841.1:CDS
AGAGAAAATATATAAGCGCC+AGG 0.545730 1:-62684167 MsaT003841.1:intron
TGAAATTCTTGGTGATGCAC+TGG 0.547692 1:-62697192 MsaT003841.1:CDS
TGTCAGCAAATGCGCAAGGT+TGG 0.548429 1:+62680883 None:intergenic
GCAGTCATGAGTTTAGGAAC+CGG 0.549808 1:-62688735 MsaT003841.1:intron
AAATGATTTGCCGCCAAGGA+AGG 0.550627 1:-62686709 MsaT003841.1:CDS
GGATGGAAGGACAGAGAGCT+CGG 0.550920 1:-62685581 MsaT003841.1:CDS
CAGATGAAGACTTCTGTACA+TGG 0.552140 1:+62698532 None:intergenic
GGACATGAATGTTGTGAAGA+AGG 0.552708 1:-62688512 MsaT003841.1:CDS
TTGCCATTTGCAAAATCCCA+GGG 0.555858 1:+62687091 None:intergenic
AACGGAAAGCCTATGGGAGA+TGG 0.561249 1:-62698375 MsaT003841.1:CDS
AGTCTTCCCACCTTACCACC+CGG 0.561656 1:+62680807 None:intergenic
AATACCCAAAGAGCCTGCTC+GGG 0.563586 1:+62685489 None:intergenic
GGTGCTCCAGGCTGGATGGA+AGG 0.565240 1:-62685594 MsaT003841.1:intron
CTCTCAAAGCTACCACGAAG+TGG 0.565513 1:-62686077 MsaT003841.1:CDS
TGGGTATCAGGCATTAGCTC+GGG 0.565614 1:-62688347 MsaT003841.1:intron
TCAGGCACAGACTCACCAAT+CGG 0.567349 1:+62681007 None:intergenic
ATTCTTGGTGATGCACTGGC+AGG 0.568159 1:-62697188 MsaT003841.1:CDS
AGTAGATATGGAACCACCCT+GGG 0.568515 1:-62687107 MsaT003841.1:intron
ATACAAATGATTTGCCGCCA+AGG 0.568732 1:-62686713 MsaT003841.1:CDS
TGATGACAAATTGCATCTTG+AGG 0.569310 1:-62707613 MsaT003841.1:intron
ATATAGCTCTATGAGGTCTA+GGG 0.571902 1:+62686100 None:intergenic
TCGATAGACAACAGGTGCAT+AGG 0.574247 1:-62684037 MsaT003841.1:CDS
AGAGGAAAAGCTATCAAAAG+AGG 0.575120 1:-62681092 MsaT003841.1:CDS
GGCTGCTGCAACAAATGGAT+CGG 0.576938 1:+62701346 None:intergenic
CTTGACAACGGAAAGCCTAT+GGG 0.576982 1:-62698381 MsaT003841.1:CDS
TCTGACAATAACAAGGCTGC+AGG 0.578273 1:-62698453 MsaT003841.1:CDS
AGGAAGGAACTAGCGATGAA+GGG 0.579108 1:-62698485 MsaT003841.1:CDS
TGTATGTTTCAGTGAATCCC+CGG 0.580484 1:+62683914 None:intergenic
TGGCTCTCCATCGACAGGAT+AGG 0.581038 1:+62698552 None:intergenic
AACTAATACCTTATCACCCA+CGG 0.581563 1:+62686142 None:intergenic
GATTTGCCGCCAAGGAAGGA+TGG 0.582755 1:-62686705 MsaT003841.1:CDS
TATAAAGAGATTGATCAAAG+TGG 0.583643 1:-62686206 MsaT003841.1:CDS
AGTCTGTGGGGAATGTGCCC+GGG 0.590845 1:-62680825 MsaT003841.1:CDS
TTATTGGAAGAGGGTGCTAG+TGG 0.592278 1:-62702572 MsaT003841.1:CDS
GATTCTAATGTGCTTGCTGG+AGG 0.592820 1:-62686991 MsaT003841.1:intron
CATCATGCAGGAACCTCTAA+CGG 0.593019 1:-62707435 MsaT003841.1:intron
TAGTAGATATGGAACCACCC+TGG 0.594736 1:-62687108 MsaT003841.1:intron
TCCAAAGCCAGAAGTGTCAA+AGG 0.596179 1:-62680984 MsaT003841.1:CDS
GAGGACGGAGTTCATCAAAT+GGG 0.596191 1:-62692707 MsaT003841.1:CDS
AATTTGTCATCAATTTCAGA+AGG 0.596729 1:+62707624 None:intergenic
AGAGGGGCTTGCTGCTAGAG+TGG 0.597809 1:-62684060 MsaT003841.1:CDS
AAAATAATTTCTGACGAGAG+TGG 0.597911 1:-62702470 MsaT003841.1:CDS
CATGCAGGAACCTCTAACGG+AGG 0.599112 1:-62707432 MsaT003841.1:intron
TCTATGACAGGTCAAAGAAG+AGG 0.599829 1:-62698974 MsaT003841.1:intron
CACTGTTGACGATATCAGCC+CGG 0.600212 1:+62698250 None:intergenic
GCACGTGAAAGACCGGGAGA+TGG 0.600364 1:-62691288 MsaT003841.1:CDS
TTCACTAGGTTACAAAAGAG+GGG 0.600616 1:-62684076 MsaT003841.1:intron
TACTAGGCAAGCATCATCCC+CGG 0.600644 1:-62683842 MsaT003841.1:intron
GTAATTTCTCCATATATGGA+GGG 0.602301 1:-62707729 None:intergenic
GCAGGAACCTCTAACGGAGG+CGG 0.602564 1:-62707429 MsaT003841.1:intron
GGGAATACCTGAGGATGAAG+TGG 0.605020 1:-62707709 MsaT003841.1:CDS
TTGAGAGATATAGCTCTATG+AGG 0.605031 1:+62686093 None:intergenic
CATGGAAAATTATTGGAAGA+GGG 0.605939 1:-62702581 MsaT003841.1:CDS
GTGGAAAGCGAGGGAAGCTG+TGG 0.605954 1:-62686058 MsaT003841.1:CDS
ACTCACCATGAGTTCTGCCG+TGG 0.606474 1:-62686159 MsaT003841.1:CDS
ATAGAATAAAACCAGTAAGT+GGG 0.607208 1:+62703541 None:intergenic
GCAAATGGCAAAAGAAGACA+AGG 0.607680 1:-62687079 MsaT003841.1:CDS
AGGCTATCTATCGAGCTTGG+AGG 0.607856 1:-62685402 MsaT003841.1:intron
ATAGCCTGAAGATCATATGT+TGG 0.607979 1:+62685418 None:intergenic
AAGTACACCTATCCTGTCGA+TGG 0.608476 1:-62698559 MsaT003841.1:CDS
AGTCTGGAGATAAAGGTCTA+GGG 0.616418 1:-62696605 MsaT003841.1:CDS
AGCTCTATGAGGTCTAGGGT+TGG 0.616837 1:+62686104 None:intergenic
ATATGGTGCTCCAGGCTGGA+TGG 0.617768 1:-62685598 MsaT003841.1:intron
TTTAACCCTGATACAAAGGA+AGG 0.618768 1:-62698501 MsaT003841.1:CDS
GGAGCAAGATATGGCTTGGG+AGG 0.620721 1:-62681071 MsaT003841.1:CDS
GGAAGGAACTAGCGATGAAG+GGG 0.623675 1:-62698484 MsaT003841.1:CDS
CGTAAGTTAAATGACCTGAT+GGG 0.624071 1:+62697088 None:intergenic
CTACCACGAAGTGGAAAGCG+AGG 0.624152 1:-62686068 MsaT003841.1:CDS
GTCTTCCCACCTTACCACCC+GGG 0.624178 1:+62680808 None:intergenic
GAAGGACAGAGAGCTCGGAA+AGG 0.624362 1:-62685576 MsaT003841.1:CDS
GTGTATTCTAGCGCATACCA+TGG 0.628693 1:-62696583 MsaT003841.1:CDS
TGAGAAATCGTTTCACAAAG+CGG 0.629607 1:-62680913 MsaT003841.1:CDS
TTGCCGGAATAAGATTCATG+TGG 0.630588 1:-62696659 MsaT003841.1:CDS
TGCAAATTACCATCTCCCAT+AGG 0.631863 1:+62698366 None:intergenic
GGAACCAAGCGTCTAAATGA+CGG 0.632189 1:-62698300 MsaT003841.1:CDS
AAAAGAATTAGATCTTTCTG+AGG 0.632248 1:-62701312 MsaT003841.1:CDS
AATTCTGTCTGACAATAACA+AGG 0.633743 1:-62698460 MsaT003841.1:CDS
AAATGACGACTCAGACGATG+AGG 0.635763 1:-62707655 MsaT003841.1:CDS
TAACTGCTTCCATTTGAATG+TGG 0.640823 1:+62683888 None:intergenic
GAAGTTCAAAGAGTACCGAT+TGG 0.642496 1:-62681022 MsaT003841.1:CDS
TGTATTCTAGCGCATACCAT+GGG 0.645213 1:-62696582 MsaT003841.1:CDS
GATCCTCCCAAATCTCCACT+GGG 0.648430 1:-62698342 MsaT003841.1:CDS
GGCTGCAGGTTTGAATATGG+AGG 0.648871 1:-62698439 MsaT003841.1:CDS
TGCCGGAATAAGATTCATGT+GGG 0.649694 1:-62696658 MsaT003841.1:CDS
CTGTGGGGAATGTGCCCGGG+TGG 0.650215 1:-62680822 MsaT003841.1:CDS
CCAAGTCTTACTGCCAAACG+AGG 0.651976 1:+62702439 None:intergenic
AATGTTGAGAGTGCTTCTGG+TGG 0.654210 1:-62707684 MsaT003841.1:CDS
CCATTTGCAAAATCCCAGGG+TGG 0.656250 1:+62687094 None:intergenic
TAAGTGTCAGCAAATGCGCA+AGG 0.657139 1:+62680879 None:intergenic
AGCTTTGCTGAAATGCTCGG+AGG 0.660385 1:+62697116 None:intergenic
TGTGCTACATAATTGGAGGA+CGG 0.660387 1:-62692722 MsaT003841.1:CDS
CTCACCATGAGTTCTGCCGT+GGG 0.669063 1:-62686158 MsaT003841.1:CDS
AGCAACCGATAAGCAAACAC+AGG 0.669991 1:+62684208 None:intergenic
TCTGTTACAAGAAAACGAAG+AGG 0.670435 1:-62681110 MsaT003841.1:CDS
AATGACGACTCAGACGATGA+GGG 0.674341 1:-62707654 MsaT003841.1:CDS
ATATATGGAGGGAATACCTG+AGG 0.677721 1:-62707718 None:intergenic
GCCAAATGGAGAGCAAAAGG+TGG 0.680097 1:-62691359 MsaT003841.1:CDS
CGAATTTCCTGGAGTCAACG+AGG 0.681788 1:-62702366 MsaT003841.1:intron
TACCACGAAGTGGAAAGCGA+GGG 0.687396 1:-62686067 MsaT003841.1:CDS
TCACCCAGTGGAGATTTGGG+AGG 0.690550 1:+62698339 None:intergenic
ATTGGAGCAAACTCTACAGG+GGG 0.693916 1:-62703733 MsaT003841.1:CDS
TGTAATGGGAGTTCATCCGA+AGG 0.696209 1:-62697224 MsaT003841.1:CDS
CATCACACACAAGAATGTCA+GGG 0.697112 1:+62688998 None:intergenic
AAGTACGTTTGAAACACAGG+AGG 0.710544 1:-62698924 MsaT003841.1:CDS
AATTGGAGCAAACTCTACAG+GGG 0.715214 1:-62703734 MsaT003841.1:CDS
GGTGATGATATTGAACAGAG+AGG 0.728660 1:-62698321 MsaT003841.1:CDS
TGTTCAATATCATCACCCAG+TGG 0.766858 1:+62698327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 62680796 62707736 62680796 ID=MsaG003841
Chr1 mRNA 62680796 62707736 62680796 ID=MsaT003841.1;Parent=MsaG003841
Chr1 exon 62680796 62681162 62680796 ID=MsaT003841.1.exon24;Parent=MsaT003841.1
Chr1 CDS 62680796 62681162 62680796 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62683843 62684090 62683843 ID=MsaT003841.1.exon23;Parent=MsaT003841.1
Chr1 CDS 62683843 62684090 62683843 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62684168 62684246 62684168 ID=MsaT003841.1.exon22;Parent=MsaT003841.1
Chr1 CDS 62684168 62684246 62684168 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62685403 62685606 62685403 ID=MsaT003841.1.exon21;Parent=MsaT003841.1
Chr1 CDS 62685403 62685606 62685403 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62686035 62686261 62686035 ID=MsaT003841.1.exon20;Parent=MsaT003841.1
Chr1 CDS 62686035 62686261 62686035 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62686686 62686747 62686686 ID=MsaT003841.1.exon19;Parent=MsaT003841.1
Chr1 CDS 62686686 62686747 62686686 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62686992 62687124 62686992 ID=MsaT003841.1.exon18;Parent=MsaT003841.1
Chr1 CDS 62686992 62687124 62686992 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62688348 62688651 62688348 ID=MsaT003841.1.exon17;Parent=MsaT003841.1
Chr1 CDS 62688348 62688651 62688348 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62688736 62688791 62688736 ID=MsaT003841.1.exon16;Parent=MsaT003841.1
Chr1 CDS 62688736 62688791 62688736 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62688876 62689025 62688876 ID=MsaT003841.1.exon15;Parent=MsaT003841.1
Chr1 CDS 62688876 62689025 62688876 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62691262 62691403 62691262 ID=MsaT003841.1.exon14;Parent=MsaT003841.1
Chr1 CDS 62691262 62691403 62691262 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62692655 62692821 62692655 ID=MsaT003841.1.exon13;Parent=MsaT003841.1
Chr1 CDS 62692655 62692821 62692655 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62696563 62696682 62696563 ID=MsaT003841.1.exon12;Parent=MsaT003841.1
Chr1 CDS 62696563 62696682 62696563 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62697103 62697318 62697103 ID=MsaT003841.1.exon11;Parent=MsaT003841.1
Chr1 CDS 62697103 62697318 62697103 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62697399 62697489 62697399 ID=MsaT003841.1.exon10;Parent=MsaT003841.1
Chr1 CDS 62697399 62697489 62697399 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62698144 62698589 62698144 ID=MsaT003841.1.exon9;Parent=MsaT003841.1
Chr1 CDS 62698144 62698589 62698144 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62698903 62698986 62698903 ID=MsaT003841.1.exon8;Parent=MsaT003841.1
Chr1 CDS 62698903 62698986 62698903 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62701289 62701402 62701289 ID=MsaT003841.1.exon7;Parent=MsaT003841.1
Chr1 CDS 62701289 62701402 62701289 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62702367 62702607 62702367 ID=MsaT003841.1.exon6;Parent=MsaT003841.1
Chr1 CDS 62702367 62702607 62702367 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62702682 62702872 62702682 ID=MsaT003841.1.exon5;Parent=MsaT003841.1
Chr1 CDS 62702682 62702872 62702682 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62703553 62703645 62703553 ID=MsaT003841.1.exon4;Parent=MsaT003841.1
Chr1 CDS 62703553 62703645 62703553 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62703728 62703823 62703728 ID=MsaT003841.1.exon3;Parent=MsaT003841.1
Chr1 CDS 62703728 62703823 62703728 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62707385 62707447 62707385 ID=MsaT003841.1.exon2;Parent=MsaT003841.1
Chr1 CDS 62707385 62707447 62707385 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Chr1 exon 62707614 62707736 62707614 ID=MsaT003841.1.exon1;Parent=MsaT003841.1
Chr1 CDS 62707614 62707736 62707614 ID=cds.MsaT003841.1;Parent=MsaT003841.1
Gene Sequence

>MsaT003841.1

ATGGAGGGAATACCTGAGGATGAAGTGGTAAATGTTGAGAGTGCTTCTGGTGGTTCTGCAAATGACGACTCAGACGATGAGGGATCTTCGCCTTCTGAAATTGATGACAAATTGCATCTTGAGGAACCTCTAACGGAGGCGGAAATAGAAGACCTTATTTCTGAGCTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCCCAAGAAACTCTTGAAGAAGAGTCTCTTGCCAAAGTGGAAAGTGAAGTTAGACAAGAATTGGAGCAAACTCTACAGGGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGGCTGCTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGATGGTGCTGGAATTGAGCTCCCAAGCCTTTATAAGTTGATTGAAAGAGAAGCTCCAGATCGTTGTTGCACTGAAGCATGGAAAAAGCGAAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTTCGTCAGTTTCTGATGCTGAAAAGTATCTACAAATAAACAGACCTGTTAGAAGGCGACATGGAAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAAATTTCTCCTGAAACTCTGGAACTTGGAAAAAAAGAAACTGAGGGGGACTGGGATGTGTTCAATAAAATAATTTCTGACGAGAGTGGTATTGATGCCTCGTTTGGCAGTAAGACTTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCGAATTTCCTGGAGTCAACGAGGTGGAAGAAATTGATGATATTGATGGCAATTCTACCGATCCATTTGTTGCAGCAGCCATTGCTAATGAAAAAGAATTAGATCTTTCTGAGGAGCAAAGAAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAGTACGTTTGAAACACAGGAGGCATCGAAAAAAAAGTAAACAGCGAGAAACAAGTACACCTATCCTGTCGATGGAGAGCCATGTACAGAAGTCTTCATCTGTTGATCAATTTAACCCTGATACAAAGGAAGGAACTAGCGATGAAGGGGAAATTCTGTCTGACAATAACAAGGCTGCAGGTTTGAATATGGAGGCCACTAAAATTAAAGGTTTTGATGCCAATTTTCATCTTGACAACGGAAAGCCTATGGGAGATGGTAATTTGCAAGATCCTCCCAAATCTCCACTGGGTGATGATATTGAACAGAGAGGAACCAAGCGTCTAAATGACGGTGAGCTTGATGCTGATAAAAAAAAGGGCCGGGCTGATATCGTCAACAGTGACGATGATATACCCGTTTCCAGTTCTGGTAGTAGTGATTCAGATGACTCAGACGACTCAGACGATTCAGACGATTCAGATGATTCAGAGATAAATGTTTCAATAAGCACTAAACGAAGACGCAAAAAGAAGATTAGGAGGATACTTGATGACACTGAATTGGGAGAAGAAACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAAGAACGCCTGAAGTCTTTGAGAGTACAGTTTTCTGCTTCATCGTTCGACACTAGCTCTGCTGGCTGTAATGGGAGTTCATCCGAAGGTGCAAGCGTTGAAATTCTTGGTGATGCACTGGCAGGTTATATAGTGAATGTTGTGAGAGAAAAAGGTGAAGAAGCGGTTAGAATACCTCCGAGCATTTCAGCAAAGCTGAAAGCCCATCAGATTGCCGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTTAAGTCTGGAGATAAAGGTCTAGGGTGTATTCTAGCGCATACCATGGGCCTGGGTAAAACATTTCAGGTAATAGCTTTCTTGTATACGGCAATGAGAAGTGTTGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTAAATGTGCTACATAATTGGAGGACGGAGTTCATCAAATGGGCACCATCAGAATTAAAGCGACTAAAGGTCTTCATGCTGGAAGATGTATCTAGAGATAGGAGGGCACAATTGCTCGCCAAATGGAGAGCAAAAGGTGGTGTACTGTTAATCGGCTATGCTGCTTTCCGGAATTTGTCTTTTGGAAAGCACGTGAAAGACCGGGAGATGGCCAGAGAACTTTGCCATGCTTTGCAGGATGGCCCTGACATTCTTGTGTGTGATGAAGCCCATATCATTAAAAATACTAAGGCTGACGTTACTCATGCCTTGAAACAAGTAAAGTGCCAGAGAAGAATTGCACTTACAGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACTCAGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAGGACCTACCGCCCAAAACTGTTTTCGTGATAACAGTCAAGCTTTCTCCCCTACAACGAAAATTGTACAAGAGATTCATTGACGTGCATGGGTTCTCTAATGTTAAGGAAAATCAGGAAAATTTAAGAAAGAGGAGTTTTTTTGCTGGGTATCAGGCATTAGCTCGGATATGGAACCACCCTGGGATTTTGCAAATGGCAAAAGAAGACAAGGAATGTGTTAGACCTGAAGATGCTGTTGAGAATTTACTTGTTGATGATATCTCAAGTGATGATTCCGATTCTAATGTGCTTGCTGGAGAGAAGTTGAAGTATACAAATGATTTGCCGCCAAGGAAGGATGGTAATGGATTTTTCATAAAGGGCTGGTGGAAAGATATTCTTCAGGGCAAAATTTATAAAGAGATTGATCAAAGTGGCAAAATGGTTTTACTAATTGATATACTCACCATGAGTTCTGCCGTGGGTGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATAGAGCTATATCTCTCAAAGCTACCACGAAGTGGAAAGCGAGGGAAGCTGTGGAAGAAGGGAAGAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCGGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTCTGAATAAAAGGGTTAAATGCACACTTATTTCAACCCGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGGTTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTTACAAAAGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAATTTGGTGATGACGAGAATCCTGAGACTTTGGCTGAACTAAGTGAACAAAGTAATCCGATTTTGGCCGGGGATTCACTGAAACATACAGTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTAATGGAAAGCTTACTAGGCAAGCATCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCTCTGTTACAAGAAAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGCAAATCGCTGGAATGGGAAGAAGTTCAAAGAGTACCGATTGGTGAGTCTGTGCCTGATCCAAAGCCAGAAGTGTCAAAGGCAGAAAACGAAAAACCTGAATTAGAAACTTGGCAGCTTTCAACTAAGCTGAGAAATCGTTTCACAAAGCGGCAATGCACCAACCTTGCGCATTTGCTGACACTTAGAAGCCAGAGAATAAAAATTGGGGGCTATACAGTCTGTGGGGAATGTGCCCGGGTGGTAAGGTGGGAAGACTTGAAGAAATAA
Protein sequence

>MsaT003841.1

MEGIPEDEVVNVESASGGSANDDSDDEGSSPSEIDDKLHLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELEQTLQGDDLETAVADEMAAFKEEWEAVLDDLETESSHLLEQLDGAGIELPSLYKLIEREAPDRCCTEAWKKRNHWVGSQATTEIASSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETLELGKKETEGDWDVFNKIISDESGIDASFGSKTWASVYLASTPQQAALMGLEFPGVNEVEEIDDIDGNSTDPFVAAAIANEKELDLSEEQRRQFKKVKEEDDAIVDRKLQVRLKHRRHRKKSKQRETSTPILSMESHVQKSSSVDQFNPDTKEGTSDEGEILSDNNKAAGLNMEATKIKGFDANFHLDNGKPMGDGNLQDPPKSPLGDDIEQRGTKRLNDGELDADKKKGRADIVNSDDDIPVSSSGSSDSDDSDDSDDSDDSDDSEINVSISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRVQFSASSFDTSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRTEFIKWAPSELKRLKVFMLEDVSRDRRAQLLAKWRAKGGVLLIGYAAFRNLSFGKHVKDREMARELCHALQDGPDILVCDEAHIIKNTKADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTQTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFIDVHGFSNVKENQENLRKRSFFAGYQALARIWNHPGILQMAKEDKECVRPEDAVENLLVDDISSDDSDSNVLAGEKLKYTNDLPPRKDGNGFFIKGWWKDILQGKIYKEIDQSGKMVLLIDILTMSSAVGDKVLVFSQSIPTLDLIELYLSKLPRSGKRGKLWKKGRDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSEQSNPILAGDSLKHTVPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPIGESVPDPKPEVSKAENEKPELETWQLSTKLRNRFTKRQCTNLAHLLTLRSQRIKIGGYTVCGECARVVRWEDLKK*