AlfalfaGEDB | MsaG003864

M. sativa ssp. caerulea / MsaG003864

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564
PFAM: PF10440.12

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003864	XP_024629421.2	83.063	555	39	3	1	502	1	553	0.0	919

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003864	sp\|Q8W595\|SUVR4_ARATH	59.583	240	93	3	264	502	135	371	9.09e-99	311

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003864	tr\|A0A396K241\|A0A396K241_MEDTR	83.063	555	39	3	1	502	1	553	0.0	919

TFs/TRs:

Gene ID	Type	Classification
MsaG003864	TR	SET

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000180	MsaG003864	0.828962	1.203254e-54	3.380440e-52
MsaG003864	MsaG004185	0.807940	6.726354e-50	1.093070e-47
MsaG003864	MsaG004500	0.803222	6.502735e-49	9.460749e-47
MsaG003864	MsaG006988	0.801894	1.217894e-48	1.718798e-46
MsaG003864	MsaG007353	0.812826	6.001329e-51	1.098513e-48
MsaG003864	MsaG007568	0.811511	1.157816e-50	2.051572e-48
MsaG003864	MsaG007834	0.820075	1.454734e-52	3.205997e-50
MsaG003864	MsaG008218	0.817107	6.804609e-52	1.388028e-49
MsaG003864	MsaG008356	0.821577	6.593967e-53	1.512042e-50
MsaG003864	MsaG008434	0.819544	1.921979e-52	4.176247e-50
MsaG003864	MsaG009477	0.814597	2.455791e-51	4.699102e-49
MsaG003864	MsaG017480	0.818112	4.048803e-52	8.475403e-50
MsaG003864	MsaG017515	0.808093	6.241388e-50	1.017994e-47
MsaG003864	MsaG019628	0.800720	2.112224e-48	2.902754e-46
MsaG003864	MsaG020467	0.815911	1.257616e-51	2.487811e-49
MsaG003864	MsaG020777	0.800560	2.276935e-48	3.117755e-46
MsaG003864	MsaG026830	0.806614	1.280440e-49	2.016251e-47
MsaG003864	MsaG026831	0.805348	2.357579e-49	3.603271e-47
MsaG003864	MsaG027026	0.812660	6.521948e-51	1.188886e-48
MsaG003864	MsaG027383	0.802512	9.101191e-49	1.302679e-46
MsaG003864	MsaG028568	0.805537	2.152440e-49	3.304143e-47
MsaG003864	MsaG028825	0.803254	6.405197e-49	9.325594e-47
MsaG003864	MsaG030045	0.823338	2.581086e-53	6.205958e-51
MsaG003864	MsaG030546	0.818044	4.194610e-52	8.765034e-50
MsaG003864	MsaG032064	0.812262	7.960642e-51	1.436838e-48
MsaG003864	MsaG036241	0.811038	1.465126e-50	2.566205e-48
MsaG003864	MsaG042898	0.826788	3.987742e-54	1.054076e-51
MsaG003864	MsaG043000	0.809152	3.718135e-50	6.220861e-48
MsaG003864	MsaG044278	0.815384	1.645189e-51	3.211412e-49
MsaG003864	MsaG046507	0.801582	1.410227e-48	1.976082e-46
MsaG003864	MsaG046930	0.815918	1.252655e-51	2.478465e-49
MsaG003864	MsaG003734	0.802236	1.036610e-48	1.474343e-46
MsaG003864	MsaG002984	0.806500	1.353475e-49	2.125462e-47
MsaG003864	MsaG002433	0.806066	1.668594e-49	2.593516e-47
MsaG003864	MsaG017935	0.812042	8.885378e-51	1.595083e-48
MsaG003864	MsaG029782	0.813270	4.799625e-51	8.883436e-49
MsaG003864	MsaG032663	0.805295	2.418026e-49	3.691005e-47
MsaG003864	MsaG034613	0.816163	1.105128e-51	2.200297e-49
MsaG003864	MsaG033405	0.824505	1.378645e-53	3.421493e-51
MsaG003864	MsaG033504	0.808124	6.148269e-50	1.003544e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003864	MtrunA17_Chr1g0190311	83.063	555	39	3	1	502	1	553	0.0	919
MsaG003864	MtrunA17_Chr8g0392541	82.334	317	27	5	173	481	10	305	1.84e-179	508
MsaG003864	MtrunA17_Chr1g0183321	55.602	241	101	5	259	497	415	651	8.20e-84	276
MsaG003864	MtrunA17_Chr7g0262001	47.909	263	124	3	256	518	370	619	4.01e-82	271
MsaG003864	MtrunA17_Chr7g0262001	29.936	157	101	1	1	157	1	148	7.72e-11	65.1
MsaG003864	MtrunA17_Chr8g0354821	24.390	205	104	4	272	476	401	554	6.17e-15	78.2
MsaG003864	MtrunA17_Chr5g0399801	26.222	225	94	7	272	489	809	968	2.01e-13	73.6
MsaG003864	MtrunA17_Chr4g0003501	26.606	218	102	6	272	489	677	836	2.41e-13	73.2
MsaG003864	MtrunA17_Chr4g0075321	43.678	87	47	2	407	493	884	968	1.70e-12	70.5
MsaG003864	MtrunA17_Chr5g0403241	37.815	119	64	4	407	524	1327	1436	8.72e-12	68.6
MsaG003864	MtrunA17_Chr8g0373821	44.286	70	38	1	406	475	360	428	1.25e-11	67.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003864	AT3G04380.3	59.583	240	93	3	264	502	119	355	8.88e-100	310
MsaG003864	AT3G04380.1	59.583	240	93	3	264	502	135	371	9.24e-100	311
MsaG003864	AT3G04380.2	59.583	240	93	3	264	502	108	344	1.33e-99	310
MsaG003864	AT3G04380.4	59.583	240	93	3	264	502	135	371	1.73e-99	310
MsaG003864	AT3G04380.5	59.583	240	93	3	264	502	92	328	1.82e-99	309
MsaG003864	AT3G04380.6	59.583	240	93	3	264	502	108	344	1.97e-99	309
MsaG003864	AT5G43990.7	49.378	241	114	3	260	500	292	524	2.60e-69	235
MsaG003864	AT5G43990.8	49.378	241	114	3	260	500	312	544	3.73e-69	235
MsaG003864	AT5G43990.12	49.378	241	114	3	260	500	312	544	3.73e-69	235
MsaG003864	AT5G43990.6	49.378	241	114	3	260	500	312	544	3.73e-69	235
MsaG003864	AT5G43990.13	49.378	241	114	3	260	500	312	544	3.73e-69	235
MsaG003864	AT5G43990.16	49.378	241	114	3	260	500	361	593	7.10e-69	235
MsaG003864	AT5G43990.16	39.091	110	66	1	1	110	1	109	6.17e-14	75.5
MsaG003864	AT5G43990.5	49.378	241	114	3	260	500	361	593	7.10e-69	235
MsaG003864	AT5G43990.5	39.091	110	66	1	1	110	1	109	6.17e-14	75.5
MsaG003864	AT5G43990.17	49.378	241	114	3	260	500	361	593	7.10e-69	235
MsaG003864	AT5G43990.17	39.091	110	66	1	1	110	1	109	6.17e-14	75.5
MsaG003864	AT5G43990.14	49.378	241	114	3	260	500	361	593	7.10e-69	235
MsaG003864	AT5G43990.14	39.091	110	66	1	1	110	1	109	6.17e-14	75.5
MsaG003864	AT5G43990.3	49.378	241	114	3	260	500	381	613	7.99e-69	236
MsaG003864	AT5G43990.3	39.091	110	66	1	1	110	1	109	6.08e-14	75.5
MsaG003864	AT5G43990.11	49.378	241	114	3	260	500	381	613	7.99e-69	236
MsaG003864	AT5G43990.11	39.091	110	66	1	1	110	1	109	6.08e-14	75.5
MsaG003864	AT5G43990.1	49.378	241	114	3	260	500	381	613	7.99e-69	236
MsaG003864	AT5G43990.1	39.091	110	66	1	1	110	1	109	6.08e-14	75.5
MsaG003864	AT5G43990.4	49.378	241	114	3	260	500	381	613	7.99e-69	236
MsaG003864	AT5G43990.4	39.091	110	66	1	1	110	1	109	6.08e-14	75.5
MsaG003864	AT5G43990.15	49.378	241	114	3	260	500	384	616	1.04e-68	235
MsaG003864	AT5G43990.15	39.091	110	66	1	1	110	24	132	5.78e-14	75.5
MsaG003864	AT5G43990.10	49.378	241	114	3	260	500	384	616	1.04e-68	235
MsaG003864	AT5G43990.10	39.091	110	66	1	1	110	24	132	5.78e-14	75.5
MsaG003864	AT5G43990.9	49.378	241	114	3	260	500	404	636	1.20e-68	236
MsaG003864	AT5G43990.9	39.091	110	66	1	1	110	24	132	5.94e-14	75.5
MsaG003864	AT5G43990.2	49.378	241	114	3	260	500	404	636	1.20e-68	236
MsaG003864	AT5G43990.2	39.091	110	66	1	1	110	24	132	5.94e-14	75.5
MsaG003864	AT1G04050.3	45.082	244	127	3	260	502	291	528	2.97e-59	208
MsaG003864	AT1G04050.2	45.082	244	127	3	260	502	395	632	6.50e-59	209
MsaG003864	AT1G04050.1	45.082	244	127	3	260	502	395	632	6.50e-59	209
MsaG003864	AT2G33290.1	26.337	243	118	9	260	497	370	556	1.17e-13	74.3
MsaG003864	AT2G33290.3	26.337	243	118	9	260	497	370	556	1.17e-13	74.3
MsaG003864	AT2G33290.4	26.337	243	118	9	260	497	370	556	1.17e-13	74.3
MsaG003864	AT2G33290.2	26.337	243	118	9	260	497	370	556	1.17e-13	74.3
MsaG003864	AT2G35160.5	26.122	245	112	9	259	493	489	674	3.51e-12	69.7
MsaG003864	AT2G35160.2	26.122	245	112	9	259	493	525	710	3.95e-12	69.7
MsaG003864	AT2G35160.3	26.122	245	112	9	259	493	525	710	3.95e-12	69.7
MsaG003864	AT2G35160.1	26.122	245	112	9	259	493	525	710	3.95e-12	69.7
MsaG003864	AT2G35160.4	26.122	245	112	9	259	493	525	710	3.95e-12	69.7
MsaG003864	AT2G22740.2	27.468	233	106	9	263	489	493	668	1.18e-11	68.2
MsaG003864	AT2G22740.1	27.468	233	106	9	263	489	493	668	1.18e-11	68.2
MsaG003864	AT1G73100.1	24.876	201	100	4	272	472	384	533	1.62e-11	67.4
MsaG003864	AT2G23740.3	41.379	87	49	2	408	494	1200	1284	4.36e-11	66.6
MsaG003864	AT2G23740.6	41.379	87	49	2	408	494	1200	1284	4.36e-11	66.6
MsaG003864	AT2G23740.2	41.379	87	49	2	408	494	1200	1284	4.36e-11	66.6
MsaG003864	AT2G23740.1	41.379	87	49	2	408	494	1193	1277	4.51e-11	66.6
MsaG003864	AT2G23740.4	41.379	87	49	2	408	494	1200	1284	4.82e-11	66.2
MsaG003864	AT2G23740.5	41.379	87	49	2	408	494	1200	1284	4.82e-11	66.2

Find 125 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATGGAATGTAATTAAATTT+TGG	0.115496	1:-62976345	None:intergenic
TCTCCAAATCCCACTTATTC+AGG	0.243515	1:+62985283	MsaT003864.1:CDS
AATATCAATATTACCCTTAC+TGG	0.257652	1:-62976121	None:intergenic
TAAATTGTGATGCTGCATTA+AGG	0.275228	1:+62976181	MsaT003864.1:CDS
TTTAACAGATTGCATGTCTA+TGG	0.280895	1:+62982551	MsaT003864.1:CDS
TCATTCTTAGTCCTCTCAAT+TGG	0.283626	1:-62982618	None:intergenic
CCTCCTGAATAAGTGGGATT+TGG	0.289128	1:-62985286	None:intergenic
TCTCCATCATGACAACTTAC+TGG	0.309078	1:-62975219	None:intergenic
AATAGTTTACCTGCAATTTA+CGG	0.316922	1:-62982755	None:intergenic
AATACACATAATGATGATAC+TGG	0.320830	1:-62982584	None:intergenic
AGTAAGGGTAATATTGATAT+TGG	0.324445	1:+62976123	MsaT003864.1:CDS
TCCCTTGCATGGTTCAGGTT+TGG	0.352000	1:-62982643	None:intergenic
TATTTCACTTGCTCGGATTA+CGG	0.361042	1:+62976398	MsaT003864.1:CDS
TTTAATTGCCCTTGGATTAG+TGG	0.363488	1:-62974776	None:intergenic
AGGTTTAAGCCGTAAATTGC+AGG	0.364369	1:+62982746	MsaT003864.1:CDS
CTTTGATACATTGTGTTACA+TGG	0.369163	1:-62976363	None:intergenic
ACTTTGAGTCAAAGGAAGAT+AGG	0.371158	1:+62974959	MsaT003864.1:CDS
CAGTCTGCATCAAGTGTTAC+AGG	0.375742	1:-62984956	None:intergenic
TATTGGTTCTTCTTCACCCT+TGG	0.376191	1:+62976140	MsaT003864.1:CDS
CCTGTCATATAATTCTGAAT+TGG	0.382980	1:-62984897	None:intergenic
AGTTTCCTGTTTAAAAGTCT+TGG	0.385683	1:-62975343	None:intergenic
AGATGTCCCTTGCATGGTTC+AGG	0.387557	1:-62982648	None:intergenic
AATATTACCCTTACTGGTTC+TGG	0.387725	1:-62976115	None:intergenic
ATTGGTTCTTCTTCACCCTT+GGG	0.396671	1:+62976141	MsaT003864.1:CDS
CATTCTTAGTCCTCTCAATT+GGG	0.399084	1:-62982617	None:intergenic
ACATTGAGTCAAAGGAAGAT+AGG	0.400746	1:+62974932	MsaT003864.1:CDS
GATTGCTGCTCTGATTGTTC+AGG	0.400884	1:+62976426	MsaT003864.1:CDS
TGAAACCCTCTCAAATTTCC+AGG	0.401603	1:+62975367	MsaT003864.1:CDS
GACTCAAGAAGGAAAGGGCT+GGG	0.401844	1:+62984808	MsaT003864.1:CDS
ACCAAGTGAAGTTTCTGTTT+AGG	0.402308	1:-62975246	None:intergenic
GTTTCCTGTTTAAAAGTCTT+GGG	0.416453	1:-62975342	None:intergenic
CTACAGCCTTCATAGCTTCA+AGG	0.424157	1:-62974801	None:intergenic
TGTGAGCTTCATGTCTTGCC+TGG	0.425441	1:-62975385	None:intergenic
AACCAATTCGCAGGCATTCA+TGG	0.426552	1:+62975407	MsaT003864.1:CDS
AGAGATAGAAAGATTTATCC+TGG	0.433743	1:+62975435	MsaT003864.1:CDS
CTGTAACACTTGATGCAGAC+TGG	0.438878	1:+62984957	MsaT003864.1:CDS
TGTGCATGCTCTCAAGAAAC+TGG	0.447117	1:+62976474	MsaT003864.1:CDS
TCAAGGGCTTTAATTGCCCT+TGG	0.448051	1:-62974784	None:intergenic
ACCTTTGCCTCCTGAATAAG+TGG	0.451032	1:-62985293	None:intergenic
TGAACCATGCAAGGGACATC+TGG	0.458656	1:+62982650	MsaT003864.1:CDS
CTTTGAGTCAAAGGAAGATA+GGG	0.461049	1:+62974960	MsaT003864.1:CDS
ATGTTAATATTTCACTTGCT+CGG	0.469780	1:+62976391	MsaT003864.1:CDS
ACTTGCTCGGATTACGGATG+AGG	0.471300	1:+62976404	MsaT003864.1:CDS
TAATAACACCAGAACCAGTA+AGG	0.476282	1:+62976107	MsaT003864.1:CDS
GGATGGCTAGGTCCATCAAT+TGG	0.481202	1:-62975489	None:intergenic
ATATGTATGTCTATCATTGC+CGG	0.482653	1:-62984933	None:intergenic
AGCCATGAATGCCTGCGAAT+TGG	0.483305	1:-62975409	None:intergenic
CCTTCAGATGATGCTGCCCC+AGG	0.486945	1:-62975453	None:intergenic
TAAAGCCCTTGAAGCTATGA+AGG	0.487111	1:+62974795	MsaT003864.1:CDS
TTTGACAGTAAGATTTCCAT+TGG	0.487180	1:-62976028	None:intergenic
CTCAGAGGTCGAGGTGAGAC+CGG	0.499560	1:+62974828	MsaT003864.1:CDS
AGTTGCCAGCTGACAAAACC+TGG	0.500562	1:-62975281	None:intergenic
TTTCATACATGCACATGAGT+TGG	0.502357	1:-62985319	None:intergenic
CATGCAAGGGACATCTGGTT+AGG	0.510972	1:+62982655	MsaT003864.1:CDS
TTCACAGACAAAGGATCCCT+TGG	0.512175	1:-62984855	None:intergenic
GGACGTTTATAAATGAGTGC+TGG	0.513398	1:+62982676	MsaT003864.1:CDS
CCAATTCAGAATTATATGAC+AGG	0.514306	1:+62984897	MsaT003864.1:CDS
CATTGAGTCAAAGGAAGATA+GGG	0.514733	1:+62974933	MsaT003864.1:CDS
GACAGGATTGTGTATAGTAC+CGG	0.515595	1:+62984914	MsaT003864.1:CDS
TGACTCAAGAAGGAAAGGGC+TGG	0.517457	1:+62984807	MsaT003864.1:CDS
TACAGCCTTCATAGCTTCAA+GGG	0.519443	1:-62974800	None:intergenic
TGTAACACTTGATGCAGACT+GGG	0.519571	1:+62984958	MsaT003864.1:CDS
AGATGCATACATTGAGTCAA+AGG	0.521675	1:+62974924	MsaT003864.1:CDS
TGATAAAATGCGAGATAGCT+AGG	0.521700	1:+62985442	MsaT003864.1:CDS
AGATTGCATGTCTATGGTAA+AGG	0.524010	1:+62982557	MsaT003864.1:CDS
TATGTCGAAGACATAACAAA+AGG	0.528469	1:+62976270	MsaT003864.1:CDS
TCTGGTGTTATTATTGCATG+TGG	0.528520	1:-62976097	None:intergenic
TAGGGCATACTTTGAGTCAA+AGG	0.530661	1:+62974951	MsaT003864.1:CDS
TATTCTGATACACATCTGAC+AGG	0.533483	1:-62976053	None:intergenic
GAGATAGAAAGATTTATCCT+GGG	0.540455	1:+62975436	MsaT003864.1:CDS
AATGAGTGCTGGAGGAAATG+TGG	0.543111	1:+62982687	MsaT003864.1:CDS
AGAAGATTTAACTTCTCCCA+AGG	0.546782	1:-62976157	None:intergenic
GACCAAACCTGAACCATGCA+AGG	0.551001	1:+62982641	MsaT003864.1:CDS
GCTCCAGTAAGTTGTCATGA+TGG	0.552655	1:+62975216	MsaT003864.1:CDS
CCCACTTATTCAGGAGGCAA+AGG	0.552876	1:+62985292	MsaT003864.1:CDS
CCTTTGTCTGTGAATATGCA+TGG	0.559027	1:+62984864	MsaT003864.1:CDS
CTGGTGTTATTATTGCATGT+GGG	0.563538	1:-62976096	None:intergenic
GTCTTGCCTGGAAATTTGAG+AGG	0.564658	1:-62975373	None:intergenic
TGTGATGCTGCATTAAGGAC+TGG	0.565305	1:+62976186	MsaT003864.1:CDS
CTTGGTAGATATAGACAACC+AGG	0.566110	1:+62975263	MsaT003864.1:CDS
CTCTGAATAGAAGGATGGCT+AGG	0.569399	1:-62975501	None:intergenic
ATGTGCATGTATGAAAAGAA+TGG	0.569441	1:+62985326	MsaT003864.1:CDS
GTGACATGCAGTGTGGAACT+CGG	0.570368	1:+62982712	MsaT003864.1:CDS
GAAGATTTAACTTCTCCCAA+GGG	0.576136	1:-62976156	None:intergenic
TGTAGGAATCTCAGAGGTCG+AGG	0.585121	1:+62974819	MsaT003864.1:CDS
AACACTAGAAGATTTGTCCA+AGG	0.586159	1:+62984838	MsaT003864.1:CDS
ACCTAAACAGAAACTTCACT+TGG	0.589122	1:+62975245	MsaT003864.1:CDS
TATGTCTTCGACATATCGAA+AGG	0.592427	1:-62976262	None:intergenic
CTAACCAGATGTCCCTTGCA+TGG	0.592907	1:-62982654	None:intergenic
GGTTCACTAAAAGCTTCCAA+TGG	0.598824	1:+62976012	MsaT003864.1:intron
TTATACAACTTTGACAACAC+CGG	0.601153	1:-62974847	None:intergenic
CCATGCATATTCACAGACAA+AGG	0.601347	1:-62984864	None:intergenic
ACTCAAGAAGGAAAGGGCTG+GGG	0.602023	1:+62984809	MsaT003864.1:CDS
ACACTAGAAGATTTGTCCAA+GGG	0.602857	1:+62984839	MsaT003864.1:CDS
CCAAATCCCACTTATTCAGG+AGG	0.603216	1:+62985286	MsaT003864.1:CDS
GAAGCTCACAACCAATTCGC+AGG	0.603245	1:+62975398	MsaT003864.1:CDS
TCTTGCCTGGAAATTTGAGA+GGG	0.607760	1:-62975372	None:intergenic
CTATCATGACCACTAATCCA+AGG	0.608409	1:+62974767	None:intergenic
TCCTGTTTAAAAGTCTTGGG+AGG	0.609380	1:-62975339	None:intergenic
GTAAAGAGTGCCCAATTGAG+AGG	0.609557	1:+62982607	MsaT003864.1:CDS
TGACATGCAGTGTGGAACTC+GGG	0.610161	1:+62982713	MsaT003864.1:CDS
TGGGTCAAGGCAAACTTCTG+AGG	0.611435	1:+62976227	MsaT003864.1:CDS
CTAGCCATCCTTCTATTCAG+AGG	0.613137	1:+62975502	MsaT003864.1:CDS
ATACACATAATGATGATACT+GGG	0.614882	1:-62982583	None:intergenic
GTTTCTTGAGAGCATGCACA+AGG	0.616452	1:-62976471	None:intergenic
AATAACACCAGAACCAGTAA+GGG	0.617172	1:+62976108	MsaT003864.1:CDS
CTTGAAGCTATGAAGGCTGT+AGG	0.618571	1:+62974802	MsaT003864.1:CDS
GCATGCTCTCAAGAAACTGG+TGG	0.621903	1:+62976477	MsaT003864.1:CDS
CGTTTATAAATGAGTGCTGG+AGG	0.622895	1:+62982679	MsaT003864.1:CDS
GAGTTTGCTTACACTTCACA+AGG	0.627019	1:+62976501	MsaT003864.1:CDS
CCTGGGGCAGCATCATCTGA+AGG	0.631336	1:+62975453	MsaT003864.1:CDS
CCTTTGCCTCCTGAATAAGT+GGG	0.637329	1:-62985292	None:intergenic
TATCATGACCACTAATCCAA+GGG	0.643499	1:+62974768	None:intergenic
CTTTGTCTGTGAATATGCAT+GGG	0.663966	1:+62984865	MsaT003864.1:CDS
ACCAAACCTGAACCATGCAA+GGG	0.670931	1:+62982642	MsaT003864.1:CDS
AGATAGAAAGATTTATCCTG+GGG	0.673209	1:+62975437	MsaT003864.1:CDS
TACACATAATGATGATACTG+GGG	0.677965	1:-62982582	None:intergenic
GTGTTGTTTGTAGAAGACAC+TGG	0.681638	1:+62975312	MsaT003864.1:CDS
GCATGCACAAGGAACTGACA+AGG	0.682125	1:-62976460	None:intergenic
GTAACACTTGATGCAGACTG+GGG	0.705204	1:+62984959	MsaT003864.1:CDS
ATTAGACGAAACCAACAGTG+AGG	0.717147	1:+62976317	MsaT003864.1:CDS
TGTGGATGTGACATGCAGTG+TGG	0.718965	1:+62982705	MsaT003864.1:CDS
ATTCTGATACACATCTGACA+GGG	0.723160	1:-62976052	None:intergenic
GAAGGCTGTAGGAATCTCAG+AGG	0.740084	1:+62974813	MsaT003864.1:CDS
GGAACTCGGGTAGTGCAACG+AGG	0.743626	1:+62982726	MsaT003864.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	62974772	62985463	62974772	ID=MsaG003864
Chr1	mRNA	62974772	62985463	62974772	ID=MsaT003864.1;Parent=MsaG003864
Chr1	exon	62974772	62974981	62974772	ID=MsaT003864.1.exon1;Parent=MsaT003864.1
Chr1	CDS	62974772	62974981	62974772	ID=cds.MsaT003864.1;Parent=MsaT003864.1
Chr1	exon	62975195	62975537	62975195	ID=MsaT003864.1.exon2;Parent=MsaT003864.1
Chr1	CDS	62975195	62975537	62975195	ID=cds.MsaT003864.1;Parent=MsaT003864.1
Chr1	exon	62976013	62976538	62976013	ID=MsaT003864.1.exon3;Parent=MsaT003864.1
Chr1	CDS	62976013	62976538	62976013	ID=cds.MsaT003864.1;Parent=MsaT003864.1
Chr1	exon	62982542	62982767	62982542	ID=MsaT003864.1.exon4;Parent=MsaT003864.1
Chr1	CDS	62982542	62982767	62982542	ID=cds.MsaT003864.1;Parent=MsaT003864.1
Chr1	exon	62984800	62984980	62984800	ID=MsaT003864.1.exon5;Parent=MsaT003864.1
Chr1	CDS	62984800	62984980	62984800	ID=cds.MsaT003864.1;Parent=MsaT003864.1
Chr1	exon	62985270	62985463	62985270	ID=MsaT003864.1.exon6;Parent=MsaT003864.1
Chr1	CDS	62985270	62985463	62985270	ID=cds.MsaT003864.1;Parent=MsaT003864.1

Gene Sequence

>MsaT003864.1

ATGACCACTAATCCAAGGGCAATTAAAGCCCTTGAAGCTATGAAGGCTGTAGGAATCTCAGAGGTCGAGGTGAGACCGGTGTTGTCAAAGTTGTATAAACTGTATGATAAAAAGTGGGAGCTTTTTGAAGATGACAATTATCGGACACTTAAAGATGCATACATTGAGTCAAAGGAAGATAGGGCATACTTTGAGTCAAAGGAAGATAGGCAAGAAGAACATAAGAGAAAAGCTCCAGTAAGTTGTCATGATGGAGAGAAACCTAAACAGAAACTTCACTTGGTAGATATAGACAACCAGGTTTTGTCAGCTGGCAACTCAAGACAAGTGTTGTTTGTAGAAGACACTGGCATACCTCCCAAGACTTTTAAACAGGAAACTATGAAACCCTCTCAAATTTCCAGGCAAGACATGAAGCTCACAACCAATTCGCAGGCATTCATGGCTGCTAGAGATAGAAAGATTTATCCTGGGGCAGCATCATCTGAAGGTCGTTGTAAAAATCCAATTGATGGACCTAGCCATCCTTCTATTCAGAGGAAAAATATGTCAAGTTCACTAAAAGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATACACACAAGATAGAAGCTACTCCCACATGCAATAATAACACCAGAACCAGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAAATTGTGATGCTGCATTAAGGACTGGCTTGAATTTTAATCGAAATGGGTCAAGGCAAACTTCTGAGGATAAAAAGAAATCCTTTCGATATGTCGAAGACATAACAAAAGGTTCTGAAAACATTAAAATATCATTATTAGACGAAACCAACAGTGAGGATTTTCCAAAATTTAATTACATTCCATGTAACACAATGTATCAAAGTGCAAATGTTAATATTTCACTTGCTCGGATTACGGATGAGGATTGCTGCTCTGATTGTTCAGGCGACTGTCTTTCCTTGTCAGTTCCTTGTGCATGCTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTTCACAAGGTTTGTTGAGTGAAAATGAAAAGTTTTTAACAGATTGCATGTCTATGGTAAAGGAACCCCAGTATCATCATTATGTGTATTGTAAAGAGTGCCCAATTGAGAGGACTAAGAATGAGACCAAACCTGAACCATGCAAGGGACATCTGGTTAGGACGTTTATAAATGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAACTCGGGTAGTGCAACGAGGTTTAAGCCGTAAATTGCAGGTGTTTTTGACTCAAGAAGGAAAGGGCTGGGGCGTTATAACACTAGAAGATTTGTCCAAGGGATCCTTTGTCTGTGAATATGCATGGGAGATTTTAACCAATTCAGAATTATATGACAGGATTGTGTATAGTACCGGCAATGATAGACATACATATCCTGTAACACTTGATGCAGACTGGGACAACGATCGAATTCTCCAAATCCCACTTATTCAGGAGGCAAAGGTAGACCAACTCATGTGCATGTATGAAAAGAATGGAGAAGTGAAATGCTTAAAAGATGAACAGAGTGTTTCTTGCTATATCCTACTTGCAACAACAAAAAAGAAACTCTCAATCATGGATTCGTGCTATGATAAAATGCGAGATAGCTAG

Protein sequence

>MsaT003864.1

MTTNPRAIKALEAMKAVGISEVEVRPVLSKLYKLYDKKWELFEDDNYRTLKDAYIESKEDRAYFESKEDRQEEHKRKAPVSCHDGEKPKQKLHLVDIDNQVLSAGNSRQVLFVEDTGIPPKTFKQETMKPSQISRQDMKLTTNSQAFMAARDRKIYPGAASSEGRCKNPIDGPSHPSIQRKNMSSSLKASNGNLTVKSLSDVYQNTHKIEATPTCNNNTRTSKGNIDIGSSSPLGEVKSSLNCDAALRTGLNFNRNGSRQTSEDKKKSFRYVEDITKGSENIKISLLDETNSEDFPKFNYIPCNTMYQSANVNISLARITDEDCCSDCSGDCLSLSVPCACSQETGGEFAYTSQGLLSENEKFLTDCMSMVKEPQYHHYVYCKECPIERTKNETKPEPCKGHLVRTFINECWRKCGCDMQCGTRVVQRGLSRKLQVFLTQEGKGWGVITLEDLSKGSFVCEYAWEILTNSELYDRIVYSTGNDRHTYPVTLDADWDNDRILQIPLIQEAKVDQLMCMYEKNGEVKCLKDEQSVSCYILLATTKKKLSIMDSCYDKMRDS*