AlfalfaGEDB | MsaG003867

M. sativa ssp. caerulea / MsaG003867

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003867	XP_013468981.1	97.753	356	5	3	1	354	1	355	0.0	702

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003867	sp\|O22768\|UNE12_ARATH	76.374	182	38	3	172	351	129	307	2.28e-78	245

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003867	tr\|A0A072VNM4\|A0A072VNM4_MEDTR	97.753	356	5	3	1	354	1	355	0.0	702

TFs/TRs:

Gene ID	Type	Classification
MsaG003867	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000034	MsaG003867	0.801574	1.415651e-48	1.983341e-46
MsaG000431	MsaG003867	0.811908	9.500918e-51	1.700035e-48
MsaG000551	MsaG003867	0.808734	4.562585e-50	7.557683e-48
MsaG001156	MsaG003867	0.811662	1.073939e-50	1.910023e-48
MsaG001178	MsaG003867	0.871276	1.578453e-66	1.930911e-63
MsaG001179	MsaG003867	0.855696	1.027355e-61	6.806213e-59
MsaG002009	MsaG003867	0.808944	4.116497e-50	6.853138e-48
MsaG002013	MsaG003867	0.823571	2.278312e-53	5.512457e-51
MsaG002016	MsaG003867	0.860683	3.427500e-63	2.735642e-60
MsaG003083	MsaG003867	0.831272	3.307463e-55	9.927203e-53
MsaG003210	MsaG003867	0.804283	3.924704e-49	5.852167e-47
MsaG003276	MsaG003867	0.857419	3.220360e-62	2.272553e-59
MsaG003288	MsaG003867	0.831382	3.107766e-55	9.358350e-53
MsaG003867	MsaG004040	0.809824	2.670225e-50	4.540800e-48
MsaG003867	MsaG004282	0.822877	3.303143e-53	7.843443e-51
MsaG003867	MsaG004373	0.821848	5.712524e-53	1.319405e-50
MsaG003867	MsaG005838	0.815775	1.347617e-51	2.656609e-49
MsaG003867	MsaG005839	0.817247	6.330920e-52	1.296088e-49
MsaG003867	MsaG006175	0.809340	3.388947e-50	5.695616e-48
MsaG003867	MsaG007093	0.838917	3.983909e-57	1.503436e-54
MsaG003867	MsaG007088	0.840624	1.438214e-57	5.725404e-55
MsaG003867	MsaG007066	0.821607	6.489494e-53	1.489287e-50
MsaG003867	MsaG007423	0.837852	7.474002e-57	2.728610e-54
MsaG003867	MsaG007428	0.850231	3.695240e-60	2.018520e-57
MsaG003867	MsaG007429	0.830079	6.459536e-55	1.873697e-52
MsaG003867	MsaG007868	0.819784	1.694756e-52	3.705928e-50
MsaG003867	MsaG007716	0.800149	2.757218e-48	3.740494e-46
MsaG003867	MsaG007814	0.805795	1.901526e-49	2.936692e-47
MsaG003867	MsaG008101	0.839414	2.964839e-57	1.136290e-54
MsaG003867	MsaG008538	0.821609	6.481441e-53	1.487538e-50
MsaG003867	MsaG008584	0.817675	5.077222e-52	1.050854e-49
MsaG003867	MsaG010053	0.823765	2.052930e-53	4.993595e-51
MsaG003867	MsaG010095	0.849350	6.496899e-60	3.444153e-57
MsaG003867	MsaG010107	0.813787	3.699021e-51	6.936121e-49
MsaG003867	MsaG010894	0.810107	2.322257e-50	3.976150e-48
MsaG003867	MsaG011296	0.801268	1.634669e-48	2.274292e-46
MsaG003867	MsaG011598	0.806984	1.070689e-49	1.700620e-47
MsaG003867	MsaG012422	0.809126	3.765229e-50	6.295823e-48
MsaG003867	MsaG012931	0.805707	1.984069e-49	3.057872e-47
MsaG003867	MsaG012939	0.857066	4.090486e-62	2.848917e-59
MsaG003867	MsaG012941	0.842367	5.022796e-58	2.113482e-55
MsaG003867	MsaG012942	0.846943	2.980223e-59	1.456533e-56
MsaG003867	MsaG012943	0.838100	6.457292e-57	2.375632e-54
MsaG003867	MsaG013646	0.845047	9.714220e-59	4.458607e-56
MsaG003867	MsaG013658	0.800512	2.327887e-48	3.184071e-46
MsaG003867	MsaG013993	0.805767	1.927357e-49	2.974629e-47
MsaG003867	MsaG014014	0.828703	1.389027e-54	3.874091e-52
MsaG003867	MsaG014184	0.804745	3.147351e-49	4.743462e-47
MsaG003867	MsaG014421	0.824242	1.588591e-53	3.914262e-51
MsaG003867	MsaG014423	0.811495	1.167012e-50	2.067112e-48
MsaG003867	MsaG014422	0.820615	1.095365e-52	2.448565e-50
MsaG003867	MsaG014541	0.810598	1.822001e-50	3.157146e-48
MsaG003867	MsaG014926	0.818729	2.938923e-52	6.251075e-50
MsaG003867	MsaG015173	0.832249	1.903398e-55	5.878312e-53
MsaG003867	MsaG015188	0.820411	1.219724e-52	2.711974e-50
MsaG003867	MsaG016724	0.832726	1.451750e-55	4.546274e-53
MsaG003867	MsaG016920	0.804375	3.755752e-49	5.612142e-47
MsaG003867	MsaG017209	0.802280	1.015183e-48	1.445354e-46
MsaG003867	MsaG017329	0.835288	3.337504e-56	1.127589e-53
MsaG003867	MsaG017373	0.806452	1.385096e-49	2.172716e-47
MsaG003867	MsaG018170	0.840770	1.318210e-57	5.271649e-55
MsaG003867	MsaG018171	0.809002	4.001111e-50	6.670339e-48
MsaG003867	MsaG018452	0.811544	1.139188e-50	2.020203e-48
MsaG003867	MsaG018553	0.801146	1.730774e-48	2.401397e-46
MsaG003867	MsaG019182	0.821298	7.640985e-53	1.739271e-50
MsaG003867	MsaG020314	0.845097	9.416022e-59	4.328596e-56
MsaG003867	MsaG020846	0.811929	9.400938e-51	1.683029e-48
MsaG003867	MsaG020873	0.822449	4.150019e-53	9.740622e-51
MsaG003867	MsaG021016	0.827834	2.245653e-54	6.112714e-52
MsaG003867	MsaG021088	0.814071	3.204021e-51	6.050656e-49
MsaG003867	MsaG021280	0.804957	2.844194e-49	4.307651e-47
MsaG003867	MsaG021405	0.871505	1.327015e-66	1.639271e-63
MsaG003867	MsaG021575	0.846726	3.415214e-59	1.657164e-56
MsaG003867	MsaG021626	0.807628	7.828993e-50	1.262703e-47
MsaG003867	MsaG021896	0.826016	6.078109e-54	1.572580e-51
MsaG003867	MsaG022010	0.813259	4.827824e-51	8.933128e-49
MsaG003867	MsaG022011	0.802108	1.101301e-48	1.561724e-46
MsaG003867	MsaG022465	0.804085	4.314536e-49	6.404001e-47
MsaG003867	MsaG022683	0.819048	2.489911e-52	5.340651e-50
MsaG003867	MsaG023089	0.801381	1.550163e-48	2.162305e-46
MsaG003867	MsaG023515	0.806257	1.521949e-49	2.376373e-47
MsaG003867	MsaG023744	0.854012	3.147049e-61	1.962791e-58
MsaG003867	MsaG023882	0.806279	1.505484e-49	2.351924e-47
MsaG003867	MsaG023884	0.811969	9.212753e-51	1.650957e-48
MsaG003867	MsaG024226	0.800393	2.461728e-48	3.358087e-46
MsaG003867	MsaG027204	0.867018	3.750496e-65	3.844003e-62
MsaG003867	MsaG028374	0.809822	2.672867e-50	4.545066e-48
MsaG003867	MsaG028375	0.828135	1.901817e-54	5.220730e-52
MsaG003867	MsaG028351	0.818691	2.997955e-52	6.370307e-50
MsaG003867	MsaG028811	0.802470	9.280551e-49	1.327081e-46
MsaG003867	MsaG029220	0.805377	2.324893e-49	3.555672e-47
MsaG003867	MsaG029899	0.807976	6.607919e-50	1.074746e-47
MsaG003867	MsaG029926	0.805619	2.069275e-49	3.182655e-47
MsaG003867	MsaG030840	0.827803	2.284166e-54	6.212074e-52
MsaG003867	MsaG030928	0.832584	1.574233e-55	4.909152e-53
MsaG003867	MsaG031277	0.801082	1.783119e-48	2.470448e-46
MsaG003867	MsaG031295	0.817299	6.166405e-52	1.264070e-49
MsaG003867	MsaG031436	0.845329	8.154022e-59	3.776898e-56
MsaG003867	MsaG033354	0.815094	1.907727e-51	3.696459e-49
MsaG003867	MsaG033370	0.833315	1.037931e-55	3.306850e-53
MsaG003867	MsaG033371	0.814836	2.174690e-51	4.186532e-49
MsaG003867	MsaG033766	0.804560	3.439404e-49	5.161373e-47
MsaG003867	MsaG034287	0.842281	5.292745e-58	2.220797e-55
MsaG003867	MsaG034288	0.843991	1.862819e-58	8.256319e-56
MsaG003867	MsaG034658	0.837999	6.853428e-57	2.513452e-54
MsaG003867	MsaG034659	0.827609	2.542515e-54	6.876984e-52
MsaG003867	MsaG035270	0.843981	1.874614e-58	8.305984e-56
MsaG003867	MsaG035375	0.828461	1.588527e-54	4.400872e-52
MsaG003867	MsaG035378	0.805670	2.019551e-49	3.109849e-47
MsaG003867	MsaG036217	0.821605	6.496544e-53	1.490834e-50
MsaG003867	MsaG038415	0.800858	1.980686e-48	2.730370e-46
MsaG003867	MsaG038533	0.801666	1.356062e-48	1.903818e-46
MsaG003867	MsaG038986	0.822751	3.532365e-53	8.359193e-51
MsaG003867	MsaG039001	0.806299	1.491105e-49	2.330531e-47
MsaG003867	MsaG039723	0.811741	1.032587e-50	1.840021e-48
MsaG003867	MsaG039724	0.801758	1.298228e-48	1.826472e-46
MsaG003867	MsaG039739	0.827116	3.333317e-54	8.892059e-52
MsaG003867	MsaG040077	0.857486	3.077456e-62	2.177082e-59
MsaG003867	MsaG040183	0.801285	1.621093e-48	2.256343e-46
MsaG003867	MsaG040384	0.810516	1.897792e-50	3.281912e-48
MsaG003867	MsaG040740	0.824383	1.472698e-53	3.642754e-51
MsaG003867	MsaG040775	0.836540	1.612653e-56	5.657288e-54
MsaG003867	MsaG040800	0.800826	2.010039e-48	2.768840e-46
MsaG003867	MsaG040980	0.816992	7.221917e-52	1.468759e-49
MsaG003867	MsaG040982	0.810236	2.179403e-50	3.743284e-48
MsaG003867	MsaG040994	0.829879	7.222397e-55	2.083065e-52
MsaG003867	MsaG041039	0.816598	8.844706e-52	1.780559e-49
MsaG003867	MsaG041368	0.803725	5.119712e-49	7.535918e-47
MsaG003867	MsaG041513	0.819474	1.993277e-52	4.323470e-50
MsaG003867	MsaG041517	0.804623	3.335916e-49	5.013378e-47
MsaG003867	MsaG041687	0.820697	1.049303e-52	2.350609e-50
MsaG003867	MsaG041888	0.859714	6.706569e-63	5.157874e-60
MsaG003867	MsaG043665	0.877820	9.677070e-69	1.579674e-65
MsaG003867	MsaG043980	0.805538	2.151881e-49	3.303309e-47
MsaG003867	MsaG044131	0.842986	3.445615e-58	1.478893e-55
MsaG003867	MsaG044284	0.828371	1.669436e-54	4.613391e-52
MsaG003867	MsaG044352	0.860449	4.031318e-63	3.189170e-60
MsaG003867	MsaG044354	0.880244	1.360431e-69	2.483051e-66
MsaG003867	MsaG044588	0.800803	2.032533e-48	2.798414e-46
MsaG003867	MsaG044606	0.813125	5.163709e-51	9.522849e-49
MsaG003867	MsaG045125	0.864238	2.798188e-64	2.564611e-61
MsaG003867	MsaG045278	0.849372	6.407801e-60	3.399650e-57
MsaG003867	MsaG045339	0.819327	2.151932e-52	4.649849e-50
MsaG003867	MsaG045446	0.839299	3.173805e-57	1.212003e-54
MsaG003867	MsaG045460	0.804686	3.237576e-49	4.872631e-47
MsaG003867	MsaG046205	0.806300	1.490202e-49	2.329178e-47
MsaG003867	MsaG046307	0.821784	5.908396e-53	1.362288e-50
MsaG003867	MsaG046311	0.819794	1.685673e-52	3.687142e-50
MsaG003867	MsaG046423	0.822118	4.947807e-53	1.151078e-50
MsaG003867	MsaG046383	0.817426	5.774155e-52	1.187533e-49
MsaG003867	MsaG046384	0.801737	1.311507e-48	1.844254e-46
MsaG003867	MsaG046630	0.816910	7.533661e-52	1.528909e-49
MsaG003867	MsaG003538	0.808270	5.726101e-50	9.379243e-48
MsaG003867	MsaG002744	0.816410	9.739252e-52	1.951237e-49
MsaG003867	MsaG008494	0.828916	1.234910e-54	3.464849e-52
MsaG003867	MsaG008770	0.814571	2.488038e-51	4.757676e-49
MsaG003867	MsaG010026	0.824487	1.392625e-53	3.454423e-51
MsaG003867	MsaG009037	0.804231	4.023882e-49	5.992721e-47
MsaG003867	MsaG014891	0.802993	7.248429e-49	1.049000e-46
MsaG003867	MsaG016847	0.812132	8.494710e-51	1.528288e-48
MsaG003867	MsaG016403	0.809000	4.005196e-50	6.676867e-48
MsaG003867	MsaG013965	0.811174	1.368994e-50	2.405850e-48
MsaG003867	MsaG019920	0.800878	1.961628e-48	2.705337e-46
MsaG003867	MsaG027786	0.830574	4.895577e-55	1.440194e-52
MsaG003867	MsaG032708	0.824202	1.623211e-53	3.995178e-51
MsaG003867	MsaG032859	0.810022	2.422862e-50	4.139661e-48
MsaG003867	MsaG033574	0.818256	3.758840e-52	7.897362e-50
MsaG003867	MsaG031221	0.825351	8.727744e-54	2.216773e-51
MsaG003867	MsaG033582	0.813110	5.203098e-51	9.591755e-49
MsaG003867	MsaG038716	0.822767	3.502378e-53	8.292081e-51
MsaG003867	MsaG037729	0.816515	9.226424e-52	1.853494e-49
MsaG003867	MsaG039770	0.852769	7.127668e-61	4.253672e-58
MsaG003867	MsaG036984	0.800725	2.108056e-48	2.897313e-46
MsaG003867	MsaG043312	0.821168	8.186386e-53	1.857059e-50
MsaG003867	MsaG043831	0.844902	1.062640e-58	4.854372e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003867	MtrunA17_Chr1g0190731	97.753	356	5	3	1	354	1	355	0.0	702
MsaG003867	MtrunA17_Chr1g0184841	79.775	178	36	0	173	350	101	278	1.71e-89	270
MsaG003867	MtrunA17_Chr4g0074161	64.130	184	52	4	165	334	173	356	1.12e-61	202
MsaG003867	MtrunA17_Chr7g0234761	64.000	75	26	1	183	256	308	382	2.11e-22	98.2
MsaG003867	MtrunA17_Chr8g0339091	64.000	75	26	1	183	256	282	356	4.62e-22	97.1
MsaG003867	MtrunA17_Chr3g0131771	48.544	103	52	1	181	282	136	238	5.83e-22	95.1
MsaG003867	MtrunA17_Chr3g0144641	69.697	66	19	1	192	256	191	256	2.04e-21	94.4
MsaG003867	MtrunA17_Chr1g0152131	68.182	66	20	1	192	256	260	325	4.12e-21	94.0
MsaG003867	MtrunA17_Chr4g0035101	68.182	66	20	1	192	256	143	208	1.25e-20	91.7
MsaG003867	MtrunA17_Chr8g0365941	68.182	66	20	1	192	256	305	370	1.90e-20	92.0
MsaG003867	MtrunA17_Chr5g0421111	68.182	66	20	1	192	256	365	430	3.26e-20	91.7
MsaG003867	MtrunA17_Chr8g0363921	65.152	66	22	1	192	256	151	216	4.10e-20	89.0
MsaG003867	MtrunA17_Chr5g0415291	60.000	75	29	1	183	256	103	177	5.05e-20	87.8
MsaG003867	MtrunA17_Chr8g0385911	65.152	66	22	1	192	256	145	210	1.40e-19	88.2
MsaG003867	MtrunA17_Chr1g0182791	49.367	79	36	1	194	272	319	393	7.68e-18	84.7
MsaG003867	MtrunA17_Chr1g0174271	50.549	91	39	3	174	258	275	365	1.03e-17	83.6
MsaG003867	MtrunA17_Chr4g0014771	59.091	66	26	1	191	255	117	182	2.97e-17	79.0
MsaG003867	MtrunA17_Chr1g0174161	39.200	125	68	4	192	310	160	282	3.64e-17	81.3
MsaG003867	MtrunA17_Chr6g0484271	41.593	113	52	4	192	298	155	259	5.08e-17	80.1
MsaG003867	MtrunA17_Chr1g0193321	52.857	70	29	1	194	263	464	529	5.44e-17	82.4
MsaG003867	MtrunA17_Chr5g0393721	58.462	65	27	0	191	255	223	287	5.67e-17	80.9
MsaG003867	MtrunA17_Chr1g0152651	56.923	65	28	0	191	255	273	337	1.03e-16	80.5
MsaG003867	MtrunA17_Chr1g0153241	47.059	85	38	2	176	260	75	152	1.11e-16	79.0
MsaG003867	MtrunA17_Chr3g0134741	46.341	82	44	0	191	272	228	309	1.30e-16	79.7
MsaG003867	MtrunA17_Chr7g0262691	50.000	70	35	0	195	264	255	324	2.17e-16	80.1
MsaG003867	MtrunA17_Chr7g0258161	60.606	66	25	1	192	256	173	238	2.63e-16	79.0
MsaG003867	MtrunA17_Chr7g0258181	50.667	75	36	1	185	258	236	310	5.72e-16	77.8
MsaG003867	MtrunA17_Chr3g0095391	53.968	63	29	0	194	256	311	373	6.69e-16	78.6
MsaG003867	MtrunA17_Chr8g0351881	52.174	69	32	1	191	258	315	383	2.96e-15	76.3
MsaG003867	MtrunA17_Chr4g0032951	53.623	69	31	1	191	258	354	422	4.89e-15	75.9
MsaG003867	MtrunA17_Chr1g0207311	45.783	83	45	0	184	266	188	270	6.85e-15	74.3
MsaG003867	MtrunA17_Chr7g0270871	51.786	56	27	0	203	258	213	268	7.60e-15	75.1
MsaG003867	MtrunA17_Chr2g0329041	54.688	64	28	1	191	253	331	394	9.26e-15	75.1
MsaG003867	MtrunA17_Chr5g0435021	57.895	57	24	0	199	255	225	281	9.53e-15	73.9
MsaG003867	MtrunA17_Chr3g0134001	46.250	80	42	1	185	264	164	242	9.59e-15	73.6
MsaG003867	MtrunA17_Chr5g0402031	59.259	54	22	0	203	256	116	169	9.88e-15	74.3
MsaG003867	MtrunA17_Chr1g0207301	48.529	68	35	0	188	255	284	351	1.41e-14	74.3
MsaG003867	MtrunA17_Chr3g0087771	47.727	88	38	3	176	255	299	386	4.75e-14	72.8
MsaG003867	MtrunA17_Chr7g0271251	51.429	70	31	1	194	263	434	500	4.90e-14	73.2
MsaG003867	MtrunA17_Chr8g0384141	50.000	70	35	0	185	254	107	176	6.43e-14	70.9
MsaG003867	MtrunA17_Chr7g0231461	49.206	63	32	0	192	254	297	359	8.13e-13	69.3
MsaG003867	MtrunA17_Chr1g0185741	32.540	126	73	1	198	323	190	303	3.68e-12	66.2
MsaG003867	MtrunA17_Chr1g0213791	50.769	65	31	1	191	254	264	328	8.09e-12	65.9
MsaG003867	MtrunA17_Chr7g0243041	49.057	53	27	0	199	251	33	85	4.03e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG003867	AT4G02590.3	76.374	182	38	3	172	351	66	244	8.03e-80	244
MsaG003867	AT4G02590.2	76.374	182	38	3	172	351	129	307	2.32e-79	245
MsaG003867	AT4G02590.1	76.374	182	38	3	172	351	129	307	2.32e-79	245
MsaG003867	AT1G03040.1	47.011	368	81	12	11	351	19	299	1.10e-74	233
MsaG003867	AT1G03040.2	73.481	181	37	4	176	351	120	294	1.22e-73	230
MsaG003867	AT1G03040.3	43.766	393	88	11	11	351	19	330	7.18e-71	224
MsaG003867	AT2G24260.2	67.974	153	44	2	185	334	28	178	8.82e-62	198
MsaG003867	AT4G30980.1	60.947	169	56	2	166	334	104	262	3.79e-60	196
MsaG003867	AT2G24260.1	67.974	153	44	2	185	334	131	281	7.00e-60	196
MsaG003867	AT4G30980.2	60.947	169	56	2	166	334	152	310	7.46e-60	197
MsaG003867	AT5G58010.1	64.286	154	47	1	189	334	96	249	8.47e-59	192
MsaG003867	AT5G48560.2	51.376	109	48	2	175	282	284	388	3.33e-23	100
MsaG003867	AT5G48560.1	51.376	109	48	2	175	282	284	388	3.76e-23	100
MsaG003867	AT5G50915.3	50.980	102	39	2	184	284	128	219	1.49e-22	95.9
MsaG003867	AT5G50915.4	50.980	102	39	2	184	284	128	219	1.49e-22	95.9
MsaG003867	AT5G50915.1	50.980	102	39	2	184	284	128	219	1.64e-22	96.3
MsaG003867	AT5G50915.2	50.980	102	39	2	184	284	128	219	1.64e-22	96.3
MsaG003867	AT4G34530.1	68.182	66	20	1	192	256	172	237	5.18e-21	92.8
MsaG003867	AT3G07340.1	69.697	66	19	1	192	256	258	323	6.64e-21	94.0
MsaG003867	AT3G07340.2	69.697	66	19	1	192	256	258	323	6.73e-21	93.6
MsaG003867	AT1G68920.3	68.182	66	20	1	192	256	302	367	1.16e-20	93.2
MsaG003867	AT1G68920.1	68.182	66	20	1	192	256	303	368	1.19e-20	93.2
MsaG003867	AT1G68920.4	68.182	66	20	1	192	256	303	368	1.19e-20	93.2
MsaG003867	AT1G68920.2	68.182	66	20	1	192	256	303	368	1.19e-20	93.2
MsaG003867	AT3G23690.1	61.333	75	28	1	183	256	182	256	1.83e-20	91.7
MsaG003867	AT1G10120.2	66.667	66	21	1	192	256	206	271	4.20e-20	90.9
MsaG003867	AT1G10120.1	66.667	66	21	1	192	256	206	271	4.20e-20	90.9
MsaG003867	AT5G62610.2	57.333	75	31	1	183	256	144	218	6.94e-20	88.6
MsaG003867	AT5G62610.1	57.333	75	31	1	183	256	144	218	6.94e-20	88.6
MsaG003867	AT2G18300.1	65.152	66	22	1	192	256	185	250	8.03e-20	89.4
MsaG003867	AT2G18300.2	65.152	66	22	1	192	256	185	250	8.46e-20	89.4
MsaG003867	AT1G26260.3	63.636	66	23	1	192	256	172	237	1.02e-19	89.4
MsaG003867	AT1G26260.5	63.636	66	23	1	192	256	201	266	1.08e-19	89.7
MsaG003867	AT1G25330.1	42.308	130	60	4	184	312	96	211	1.13e-19	87.0
MsaG003867	AT4G36540.2	52.273	88	39	2	170	256	121	206	1.14e-19	88.6
MsaG003867	AT1G59640.1	65.152	66	22	1	192	256	136	201	1.15e-19	87.8
MsaG003867	AT2G18300.3	65.152	66	22	1	192	256	185	250	1.16e-19	89.4
MsaG003867	AT4G36540.1	52.273	88	39	2	170	256	121	206	1.20e-19	88.6
MsaG003867	AT1G26260.4	63.636	66	23	1	192	256	223	288	1.31e-19	89.7
MsaG003867	AT1G26260.1	63.636	66	23	1	192	256	223	288	1.31e-19	89.7
MsaG003867	AT1G26260.6	63.636	66	23	1	192	256	223	288	1.31e-19	89.7
MsaG003867	AT1G26260.2	63.636	66	23	1	192	256	223	288	1.31e-19	89.7
MsaG003867	AT2G42300.1	44.737	114	58	3	192	301	185	297	4.16e-19	87.4
MsaG003867	AT1G59640.2	65.152	66	22	1	192	256	136	201	4.25e-19	87.4
MsaG003867	AT1G73830.2	52.809	89	38	3	192	279	147	232	1.09e-18	85.1
MsaG003867	AT1G73830.1	52.809	89	38	3	192	279	147	232	1.15e-18	85.1
MsaG003867	AT3G57800.2	47.619	105	49	3	192	291	204	307	6.79e-18	84.3
MsaG003867	AT1G27740.1	45.833	96	46	1	171	266	152	241	1.33e-17	82.0
MsaG003867	AT2G20180.7	56.452	62	27	0	195	256	210	271	2.15e-17	83.2
MsaG003867	AT2G20180.1	56.452	62	27	0	195	256	210	271	2.15e-17	83.2
MsaG003867	AT2G20180.5	56.452	62	27	0	195	256	210	271	2.15e-17	83.2
MsaG003867	AT4G33880.1	48.837	86	44	0	191	276	265	350	2.40e-17	82.4
MsaG003867	AT1G18400.2	55.405	74	31	2	192	264	145	217	3.14e-17	80.5
MsaG003867	AT2G20180.4	55.556	63	28	0	194	256	280	342	3.29e-17	83.2
MsaG003867	AT2G20180.6	55.556	63	28	0	194	256	280	342	3.29e-17	83.2
MsaG003867	AT2G20180.2	55.556	63	28	0	194	256	280	342	3.29e-17	83.2
MsaG003867	AT2G20180.3	55.556	63	28	0	194	256	280	342	3.29e-17	83.2
MsaG003867	AT2G14760.1	56.522	69	30	0	191	259	236	304	4.53e-17	81.6
MsaG003867	AT1G18400.1	54.667	75	32	2	192	265	145	218	6.74e-17	80.1
MsaG003867	AT1G09530.3	51.562	64	31	0	194	257	339	402	9.03e-17	82.0
MsaG003867	AT1G09530.2	51.562	64	31	0	194	257	339	402	9.03e-17	82.0
MsaG003867	AT1G09530.5	51.562	64	31	0	194	257	339	402	9.03e-17	82.0
MsaG003867	AT1G09530.1	51.562	64	31	0	194	257	339	402	9.03e-17	82.0
MsaG003867	AT1G09530.4	51.562	64	31	0	194	257	339	402	9.03e-17	82.0
MsaG003867	AT1G09530.6	51.562	64	31	0	194	257	339	402	9.03e-17	82.0
MsaG003867	AT2G42300.4	62.121	66	24	1	192	256	185	250	1.18e-16	79.3
MsaG003867	AT2G42280.1	56.522	69	29	1	191	258	278	346	1.66e-16	80.1
MsaG003867	AT2G20180.8	56.667	60	26	0	194	253	280	339	2.73e-16	79.3
MsaG003867	AT5G43175.1	46.250	80	43	0	187	266	127	206	3.97e-16	77.0
MsaG003867	AT4G09180.1	57.576	66	27	1	191	255	183	248	4.80e-16	77.4
MsaG003867	AT1G35460.1	57.576	66	27	1	191	255	180	245	9.42e-16	76.6
MsaG003867	AT2G42280.3	59.375	64	25	1	191	253	278	341	1.23e-15	77.8
MsaG003867	AT1G51140.1	55.072	69	30	1	191	258	303	371	8.67e-15	75.1
MsaG003867	AT2G14760.3	44.211	95	40	1	191	272	236	330	1.03e-14	74.7
MsaG003867	AT4G36930.1	55.932	59	26	0	198	256	197	255	1.48e-14	74.7
MsaG003867	AT5G67110.1	42.529	87	48	1	187	273	82	166	2.07e-14	72.0
MsaG003867	AT4G00050.2	47.826	69	36	0	187	255	100	168	4.40e-14	72.4
MsaG003867	AT5G37800.1	54.237	59	27	0	201	259	210	268	7.82e-14	71.6
MsaG003867	AT1G66470.1	53.226	62	29	0	201	262	204	265	7.83e-14	71.6
MsaG003867	AT4G00050.1	47.826	69	36	0	187	255	202	270	1.09e-13	72.0
MsaG003867	AT4G00050.3	47.826	69	36	0	187	255	202	270	1.18e-13	72.0
MsaG003867	AT3G21330.1	57.143	56	24	0	199	254	276	331	1.35e-13	71.6
MsaG003867	AT4G28815.2	49.123	57	29	0	195	251	71	127	1.35e-13	70.1
MsaG003867	AT4G28790.1	45.588	68	37	0	189	256	268	335	2.63e-13	70.9
MsaG003867	AT4G28815.1	49.123	57	29	0	195	251	147	203	4.23e-13	69.7
MsaG003867	AT2G43010.2	58.333	60	25	0	195	254	254	313	1.08e-12	69.3
MsaG003867	AT2G43010.1	58.333	60	25	0	195	254	254	313	1.10e-12	69.3
MsaG003867	AT2G43010.3	58.333	60	25	0	195	254	261	320	1.14e-12	69.3
MsaG003867	AT2G43010.4	58.333	60	25	0	195	254	254	313	1.33e-12	68.9
MsaG003867	AT3G59060.3	53.968	63	29	0	194	256	252	314	1.40e-12	68.9
MsaG003867	AT3G59060.2	53.968	63	29	0	194	256	252	314	1.40e-12	68.9
MsaG003867	AT3G59060.4	53.968	63	29	0	194	256	252	314	1.40e-12	68.9
MsaG003867	AT3G59060.1	53.968	63	29	0	194	256	252	314	1.42e-12	68.9
MsaG003867	AT5G01305.1	47.692	65	34	0	187	251	32	96	1.47e-12	65.9
MsaG003867	AT2G43010.5	58.333	60	25	0	195	254	296	355	1.60e-12	68.9
MsaG003867	AT4G28800.1	40.000	80	43	1	195	269	252	331	2.40e-12	68.2
MsaG003867	AT2G43140.1	55.385	65	28	1	191	254	133	197	2.44e-12	65.9
MsaG003867	AT2G43140.2	55.385	65	28	1	191	254	230	294	2.56e-12	67.4
MsaG003867	AT4G28800.2	41.333	75	43	1	195	269	264	337	4.84e-12	67.4
MsaG003867	AT4G28790.2	45.312	64	35	0	189	252	268	331	5.46e-12	66.6
MsaG003867	AT2G46970.2	42.857	63	36	0	194	256	194	256	8.13e-12	66.2
MsaG003867	AT2G46970.1	42.857	63	36	0	194	256	225	287	8.58e-12	66.2
MsaG003867	AT2G46970.3	42.857	63	36	0	194	256	203	265	9.19e-12	66.2
MsaG003867	AT4G00120.1	46.429	56	30	0	199	254	119	174	9.23e-11	61.2

Find 100 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGATGATTGTTGTTATTAT+TGG	0.222076	1:+63024284	None:intergenic
ACCACTTCGCCCAGGCTTGC+TGG	0.236946	1:+63020160	None:intergenic
AATGCCATTAGGGTTGAATT+TGG	0.253477	1:-63024391	MsaT003867.1:CDS
TATGGAGGAGTGTTGCAATT+AGG	0.263483	1:-63024456	MsaT003867.1:CDS
TATGTGTGGTTGTTTGATTC+AGG	0.263977	1:+63019979	None:intergenic
TGCTCCAAATTCAACCCTAA+TGG	0.335229	1:+63024387	None:intergenic
GCAGTAACAGACGCTGGATT+TGG	0.346934	1:+63021185	None:intergenic
ATGGAGGAGTGTTGCAATTA+GGG	0.350739	1:-63024455	MsaT003867.1:CDS
CAGACGCTGGATTTGGTTGC+TGG	0.356776	1:+63021192	None:intergenic
ACAACAAGTGGCTAAACTTA+TGG	0.361454	1:-63020121	MsaT003867.1:CDS
CCTGAGAACGGAGTTGGATA+TGG	0.362508	1:-63024474	MsaT003867.1:CDS
GAAGGTGAAGTTGGGGTTGA+GGG	0.362623	1:+63023248	None:intergenic
TTCTTCACCTTCTTCTACTC+CGG	0.363218	1:-63024205	MsaT003867.1:CDS
AAAATACCTGTTGATGTTGA+TGG	0.363261	1:+63023224	None:intergenic
ATTGCTGATGCTAGAGATAT+AGG	0.364284	1:+63020042	None:intergenic
GTGGAACCAACCAGCAAGCC+TGG	0.378933	1:-63020170	MsaT003867.1:CDS
GGAGGAGGAATAATGCCATT+AGG	0.379503	1:-63024402	MsaT003867.1:CDS
GTTCCTTAGGCTCCAAGTTA+AGG	0.387394	1:-63020761	MsaT003867.1:intron
GGTAATTGTTCAGAAGGATT+AGG	0.387856	1:-63024528	MsaT003867.1:CDS
ATCAAGCATCGCCGCTTTGT+CGG	0.390301	1:+63020804	None:intergenic
TTGATTATGTGAAGTTCCTT+AGG	0.396018	1:-63020774	MsaT003867.1:CDS
ACCACCAACCTTGTTGATGC+TGG	0.396309	1:+63020945	None:intergenic
TGAAGGTGAAGTTGGGGTTG+AGG	0.397507	1:+63023247	None:intergenic
TTGATGGTGAAGGTGAAGTT+GGG	0.397560	1:+63023240	None:intergenic
AGAAGTGATATTGTTGTTGT+TGG	0.398144	1:+63024224	None:intergenic
AAGGTGAAGTTGGGGTTGAG+GGG	0.404256	1:+63023249	None:intergenic
TGAAAGAATGAAGGCATTGC+AGG	0.407899	1:-63020977	MsaT003867.1:CDS
TATCACCTCCACTGCAGAAA+CGG	0.427521	1:+63020368	None:intergenic
AAAATCATCATGGGTTTCTC+AGG	0.434914	1:-63024365	MsaT003867.1:CDS
TGAAAACATACCGTGATTCC+CGG	0.439741	1:+63024186	None:intergenic
GAGGAGGAATAATGCCATTA+GGG	0.440092	1:-63024401	MsaT003867.1:CDS
CCTTCACCATCAACATCAAC+AGG	0.445364	1:-63023230	MsaT003867.1:intron
CTTCGCCCAGGCTTGCTGGT+TGG	0.445620	1:+63020164	None:intergenic
GTTGATGGTGAAGGTGAAGT+TGG	0.448178	1:+63023239	None:intergenic
ATCACCTCCACTGCAGAAAC+GGG	0.449434	1:+63020369	None:intergenic
GGTTCTTTGAGAGGAGGAGG+AGG	0.456738	1:-63024417	MsaT003867.1:CDS
GGACGGATGCCAGGTGGTTG+TGG	0.459379	1:+63021158	None:intergenic
CCATATCCAACTCCGTTCTC+AGG	0.478428	1:+63024474	None:intergenic
AGGCATTATGCAAAGTGCCT+TGG	0.488843	1:+63020062	None:intergenic
AGGTGAAGTTGGGGTTGAGG+GGG	0.491473	1:+63023250	None:intergenic
ATGAGTAGACTTGGTGGAGC+TGG	0.497941	1:-63020420	MsaT003867.1:CDS
TACCCGCTCAGCAATGCTGT+GGG	0.498183	1:+63021100	None:intergenic
CGCACTCGAGGACGGATGCC+AGG	0.498354	1:+63021149	None:intergenic
GATTGGAGCATGGGGCGTAC+AGG	0.498420	1:+63023277	None:intergenic
AATTTGGAGCAAAATCATCA+TGG	0.505233	1:-63024375	MsaT003867.1:CDS
ATACCTTAACTTGGAGCCTA+AGG	0.506615	1:+63020758	None:intergenic
GATAACGTTGTAGATGTTGA+AGG	0.512654	1:-63024315	MsaT003867.1:CDS
GCAGTGCCTGAGAACGGAGT+TGG	0.513102	1:-63024480	MsaT003867.1:CDS
ATCGTTCGACCACTTCGCCC+AGG	0.518825	1:+63020152	None:intergenic
TTCTTGCTCGCACTCGAGGA+CGG	0.520681	1:+63021141	None:intergenic
GGTGGTTCTTTGAGAGGAGG+AGG	0.522850	1:-63024420	MsaT003867.1:CDS
CTTCCCATCTTAGACATGGC+TGG	0.523854	1:-63024549	None:intergenic
CCACCAACCTTGTTGATGCT+GGG	0.525257	1:+63020946	None:intergenic
TCTTCACCTTCTTCTACTCC+GGG	0.529181	1:-63024204	MsaT003867.1:CDS
ATGGCTGGTAATTGTTCAGA+AGG	0.538081	1:-63024534	MsaT003867.1:CDS
TCGTTATACATACCTTAACT+TGG	0.540027	1:+63020749	None:intergenic
ATTTGGAGCAAAATCATCAT+GGG	0.540073	1:-63024374	MsaT003867.1:CDS
TTCTTCTACTCCGGGAATCA+CGG	0.541214	1:-63024196	MsaT003867.1:intron
CCCGCTCAGCAATGCTGTGG+GGG	0.544277	1:+63021102	None:intergenic
CAATTAGGGTCCACACCTCA+TGG	0.545517	1:-63024441	MsaT003867.1:CDS
GTCTTGAGCATGAGTAGACT+TGG	0.551854	1:-63020429	MsaT003867.1:CDS
CCTCGAGTGCGAGCAAGAAG+AGG	0.556095	1:-63021137	MsaT003867.1:CDS
CCTCTTCTTGCTCGCACTCG+AGG	0.556798	1:+63021137	None:intergenic
TGGAACCAACCAGCAAGCCT+GGG	0.559582	1:-63020169	MsaT003867.1:CDS
TTGAGCATGAGTAGACTTGG+TGG	0.564283	1:-63020426	MsaT003867.1:CDS
TGATGTTCCCGTTTCTGCAG+TGG	0.567967	1:-63020376	MsaT003867.1:CDS
CCTCATGGTGGTTCTTTGAG+AGG	0.573318	1:-63024426	MsaT003867.1:CDS
GGGGTTGAGATTGGAGCATG+GGG	0.575204	1:+63023269	None:intergenic
TAGGGATTCGATGCAGATGA+GGG	0.576882	1:-63023347	MsaT003867.1:CDS
ACCAGCAAGCCTGGGCGAAG+TGG	0.578504	1:-63020161	MsaT003867.1:CDS
AAACTTATGGAGGAAGATGT+TGG	0.580007	1:-63020108	MsaT003867.1:CDS
GTGATTCCCGGAGTAGAAGA+AGG	0.581181	1:+63024198	None:intergenic
ACTGCCATGCCACAACCACC+TGG	0.582186	1:-63021167	MsaT003867.1:CDS
GATGCCAGGTGGTTGTGGCA+TGG	0.582703	1:+63021163	None:intergenic
ATCTTAGCAGTGCCTGAGAA+CGG	0.585394	1:-63024486	MsaT003867.1:CDS
AAGAATCGCTGAAAGAATGA+AGG	0.587024	1:-63020986	MsaT003867.1:CDS
TTACCCGCTCAGCAATGCTG+TGG	0.587723	1:+63021099	None:intergenic
CATGGTGGTTCTTTGAGAGG+AGG	0.592231	1:-63024423	MsaT003867.1:CDS
ACCCGCTCAGCAATGCTGTG+GGG	0.594692	1:+63021101	None:intergenic
CGTACAGGTTGAGCATGAGT+AGG	0.607775	1:+63023292	None:intergenic
CAAAGAACCACCATGAGGTG+TGG	0.610161	1:+63024431	None:intergenic
TGGGCGAAGTGGTCGAACGA+TGG	0.612445	1:-63020150	MsaT003867.1:CDS
CCTGTTGATGTTGATGGTGA+AGG	0.618640	1:+63023230	None:intergenic
TATGCAACTTCTTCAATCCA+AGG	0.620224	1:-63020079	MsaT003867.1:CDS
ACAAGTGGCTAAACTTATGG+AGG	0.629716	1:-63020118	MsaT003867.1:CDS
CGATGGAACAGAACAACAAG+TGG	0.630398	1:-63020133	MsaT003867.1:CDS
ATTGTTGATGAGTCTGATTG+AGG	0.631316	1:+63020009	None:intergenic
ATTAGTTCCCAGCATCAACA+AGG	0.633940	1:-63020953	MsaT003867.1:intron
ATAGGGATTCGATGCAGATG+AGG	0.634626	1:-63023348	MsaT003867.1:CDS
GAGAACGGAGTTGGATATGG+AGG	0.637215	1:-63024471	MsaT003867.1:CDS
TGATGGTGAAGGTGAAGTTG+GGG	0.641527	1:+63023241	None:intergenic
GGCAGCATCAAGATGCAACA+CGG	0.647342	1:-63024344	MsaT003867.1:CDS
TAGGAGTAACATTCTATGTG+TGG	0.651108	1:+63019965	None:intergenic
GGCATGGCAGTAACAGACGC+TGG	0.657355	1:+63021179	None:intergenic
TGTTCCCGTTTCTGCAGTGG+AGG	0.663300	1:-63020373	MsaT003867.1:intron
AGGGATTCGATGCAGATGAG+GGG	0.670786	1:-63023346	MsaT003867.1:CDS
ACTCGAGGACGGATGCCAGG+TGG	0.696377	1:+63021152	None:intergenic
CCTCTCAAAGAACCACCATG+AGG	0.710136	1:+63024426	None:intergenic
GTGGTTGTAGACCGACAAAG+CGG	0.740845	1:-63020815	MsaT003867.1:intron
TTAGGGTCCACACCTCATGG+TGG	0.762797	1:-63024438	MsaT003867.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	63019978	63024556	63019978	ID=MsaG003867
Chr1	mRNA	63019978	63024556	63019978	ID=MsaT003867.1;Parent=MsaG003867
Chr1	exon	63019978	63020208	63019978	ID=MsaT003867.1.exon7;Parent=MsaT003867.1
Chr1	CDS	63019978	63020208	63019978	ID=cds.MsaT003867.1;Parent=MsaT003867.1
Chr1	exon	63020374	63020451	63020374	ID=MsaT003867.1.exon6;Parent=MsaT003867.1
Chr1	CDS	63020374	63020451	63020374	ID=cds.MsaT003867.1;Parent=MsaT003867.1
Chr1	exon	63020762	63020827	63020762	ID=MsaT003867.1.exon5;Parent=MsaT003867.1
Chr1	CDS	63020762	63020827	63020762	ID=cds.MsaT003867.1;Parent=MsaT003867.1
Chr1	exon	63020954	63021019	63020954	ID=MsaT003867.1.exon4;Parent=MsaT003867.1
Chr1	CDS	63020954	63021019	63020954	ID=cds.MsaT003867.1;Parent=MsaT003867.1
Chr1	exon	63021103	63021225	63021103	ID=MsaT003867.1.exon3;Parent=MsaT003867.1
Chr1	CDS	63021103	63021225	63021103	ID=cds.MsaT003867.1;Parent=MsaT003867.1
Chr1	exon	63023231	63023371	63023231	ID=MsaT003867.1.exon2;Parent=MsaT003867.1
Chr1	CDS	63023231	63023371	63023231	ID=cds.MsaT003867.1;Parent=MsaT003867.1
Chr1	exon	63024197	63024556	63024197	ID=MsaT003867.1.exon1;Parent=MsaT003867.1
Chr1	CDS	63024197	63024556	63024197	ID=cds.MsaT003867.1;Parent=MsaT003867.1

Gene Sequence

>MsaT003867.1

ATGGCTGGTAATTGTTCAGAAGGATTAGGTGATGATTTCTTTGAGCAGATCTTAGCAGTGCCTGAGAACGGAGTTGGATATGGAGGAGTGTTGCAATTAGGGTCCACACCTCATGGTGGTTCTTTGAGAGGAGGAGGAGGAATAATGCCATTAGGGTTGAATTTGGAGCAAAATCATCATGGGTTTCTCAGGCAGCATCAAGATGCAACACGGTTTGTTGATAACGTTGTAGATGTTGAAGGAAATATTACCAATAATAACAACAATCATCATCATCTTCGTCTACATGATATCAATAATCATAACAACACCAACAACAACAATATCACTTCTTCACCTTCTTCTACTCCGGGAATCACGGATAGGGATTCGATGCAGATGAGGGGTTTATTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAACCTGTACGCCCCATGCTCCAATCTCAACCCCCTCAACCCCAACTTCACCTTCACCATCAACATCAACAGCACTTTCAGAGCCAGCAACCAAATCCAGCGTCTGTTACTGCCATGCCACAACCACCTGGCATCCGTCCTCGAGTGCGAGCAAGAAGAGGCCAAGCCACAGACCCCCACAGCATTGCTGAGCGGCTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAACAAGACCGACAAAGCGGCGATGCTTGATGAAATTGTTGATTATGTGAAGTTCCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAACTTGTAGCTGATGTTCCCGTTTCTGCAGTGGAGGGGGAGGACATAGAAGGTGGAACCAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTGGCTAAACTTATGGAGGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCCAAGGCACTTTGCATAATGCCTATATCTCTAGCATCAGCAATTTTTCGTATGCCTCAATCAGACTCATCAACAATCATCAAGCCTGAATCAAACAACCACACATAG

Protein sequence

>MsaT003867.1

MAGNCSEGLGDDFFEQILAVPENGVGYGGVLQLGSTPHGGSLRGGGGIMPLGLNLEQNHHGFLRQHQDATRFVDNVVDVEGNITNNNNNHHHLRLHDINNHNNTNNNNITSSPSSTPGITDRDSMQMRGLFSTFGQLHTPTHAQPVRPMLQSQPPQPQLHLHHQHQQHFQSQQPNPASVTAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGEDIEGGTNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDSSTIIKPESNNHT*